Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 4.6e-51 204.1 94 100.0
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 4.6e-51 204.1 94 100.0
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 4.6e-51 204.1 94 100.0
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 7.6e-46 186.8 96 91.7
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 7.6e-46 186.8 96 91.7
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 2.9e-45 184.9 94 88.3
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 9.6e-41 169.9 94 79.8
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 2.1e-40 168.7 95 81.1
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-40 168.3 95 80.0
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.8e-40 168.3 95 80.0
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 8.1e-40 166.8 95 80.0
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 8.1e-40 166.8 95 80.0
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 3.5e-35 151.4 94 72.3
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 3.5e-35 151.4 94 72.3
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 2.3e-34 148.7 94 71.3
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 2.3e-34 148.7 94 71.3
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.3e-34 148.7 96 72.9
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.0e-34 148.3 95 72.6
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 7.4e-33 143.7 94 70.2
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 7.4e-33 143.7 94 70.2
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 7.4e-33 143.7 94 70.2
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 7.7e-14 80.5 76 50.0
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.1e-12 76.6 76 50.0
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.5e-12 75.5 78 52.6
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 4.2e-12 74.7 71 49.3
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 5.5e-12 74.3 78 47.4
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.2e-11 73.2 76 46.1
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.6e-11 72.8 35 91.4
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.6e-11 72.8 76 51.3
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.7e-11 72.0 76 46.1
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.7e-11 72.0 76 46.1
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 3.6e-11 71.6 77 48.1
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.6e-11 71.2 77 45.5
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.6e-11 71.2 76 50.0
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.6e-11 71.2 76 50.0
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.0e-10 70.1 79 46.8
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.8e-10 69.3 76 48.7
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.8e-10 69.3 76 48.7
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.8e-10 69.3 76 48.7
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 2.3e-10 68.9 79 48.1
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.3e-10 68.9 79 48.1
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.0e-10 68.6 79 48.1
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.0e-10 68.6 76 44.7
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 5.1e-10 67.8 70 50.0
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 5.1e-10 67.8 79 46.8
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 5.1e-10 67.8 76 43.4
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 6.7e-10 67.4 82 42.7
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.1e-09 66.6 72 45.8
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 1.5e-09 66.2 78 41.0
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.5e-09 66.2 78 47.4
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.0e-09 65.9 86 40.7
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.0e-09 65.9 85 43.5
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.0e-09 65.9 76 43.4
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 2.5e-09 65.5 78 47.4
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 3.3e-09 65.1 71 43.7
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.3e-09 64.7 76 47.4
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 4.3e-09 64.7 80 41.2
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 4.3e-09 64.7 80 41.2
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-08 63.2 82 45.1
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-08 63.2 64 43.8
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 63.2 82 45.1
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 63.2 82 40.2
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 63.2 82 45.1
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 63.2 64 43.8
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-08 63.2 82 45.1
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-08 63.2 64 43.8
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.3e-08 63.2 82 45.1
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.7e-08 62.8 74 50.0
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.7e-08 62.8 74 41.9
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-08 62.4 70 50.0
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 2.8e-08 62.0 82 42.7
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 2.8e-08 62.0 56 55.4
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.8e-08 62.0 39 66.7
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 2.8e-08 62.0 39 66.7
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.8e-08 62.0 84 39.3
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 2.8e-08 62.0 76 40.8
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.8e-08 62.0 75 46.7
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 3.7e-08 61.6 82 47.6
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 4.8e-08 61.2 79 44.3
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 6.3e-08 60.8 77 41.6
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 6.3e-08 60.8 86 41.9
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 6.3e-08 60.8 85 42.4
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 8.2e-08 60.5 56 55.4
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-07 60.1 69 47.8
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.1e-07 60.1 71 43.7
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.8e-07 59.3 83 38.6
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 1.8e-07 59.3 63 47.6
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.8e-07 59.3 74 43.2
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 2.4e-07 58.9 63 47.6
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 3.1e-07 58.5 76 38.2
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 4.1e-07 58.2 77 40.3
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.3e-07 57.8 83 37.3
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 5.3e-07 57.8 66 43.9
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 9.1e-07 57.0 27 85.2
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 9.1e-07 57.0 27 85.2
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 9.1e-07 57.0 27 85.2
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.2e-06 56.6 69 40.6
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 1.5e-06 56.2 90 38.9
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 2.0e-06 55.8 41 56.1
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 2.6e-06 55.5 63 42.9
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 2.6e-06 55.5 25 88.0
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 4.5e-06 54.7 25 88.0
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 4.5e-06 54.7 36 63.9
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 4.5e-06 54.7 36 63.9
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 4.5e-06 54.7 36 63.9
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 4.5e-06 54.7 29 75.9
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 5.9e-06 54.3 66 43.9
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 5.9e-06 54.3 80 38.8
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 5.9e-06 54.3 76 36.8
BcaB05g21528 Brassica carinata HOM05D004540 ORTHO05D004852 7.7e-06 53.9 41 58.5


User provided reference genes

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