Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 2.1e-115 419.1 217 100.0
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.0e-106 390.2 217 94.0
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 6.8e-106 387.5 211 95.3
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 9.8e-81 303.9 162 95.1
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.4e-74 283.5 223 70.9
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 1.4e-74 283.5 223 70.9
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 1.8e-74 283.1 162 89.5
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 6.8e-74 281.2 223 70.0
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 6.8e-74 281.2 223 70.0
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 3.4e-73 278.9 223 69.5
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 4.4e-73 278.5 223 69.5
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 5.8e-73 278.1 223 69.5
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 9.8e-73 277.3 223 69.5
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 6.4e-72 274.6 217 70.0
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 1.9e-71 273.1 223 68.6
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.9e-68 263.1 217 65.9
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 3.3e-68 262.3 223 64.1
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.1e-67 259.6 223 64.6
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 2.8e-67 259.2 223 63.7
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 2.8e-67 259.2 219 64.4
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.8e-67 259.2 223 63.7
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 4.7e-67 258.5 217 65.0
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 4.7e-67 258.5 223 62.8
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 4.7e-67 258.5 223 63.7
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 4.7e-67 258.5 223 63.7
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 6.2e-67 258.1 223 63.2
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 6.2e-67 258.1 223 62.8
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 6.2e-67 258.1 219 63.9
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 8.1e-67 257.7 217 64.1
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.1e-66 257.3 219 64.4
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.8e-66 256.5 224 63.4
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 1.8e-66 256.5 223 62.3
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.8e-66 256.5 223 62.8
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.3e-66 256.1 217 63.6
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 2.3e-66 256.1 220 63.6
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 2.3e-66 256.1 219 64.4
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.1e-66 255.8 215 63.7
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 3.1e-66 255.8 223 63.2
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 5.2e-66 255.0 223 61.9
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 6.8e-66 254.6 217 64.5
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 8.9e-66 254.2 217 64.1
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 8.9e-66 254.2 220 62.3
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.2e-65 253.8 220 63.2
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.2e-65 253.8 223 62.3
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.2e-65 253.8 219 63.5
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 1.5e-65 253.4 223 62.3
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.5e-65 253.4 223 61.9
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.5e-65 253.4 217 64.1
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 1.5e-65 253.4 218 63.3
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.5e-65 253.4 223 62.3
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 1.5e-65 253.4 223 62.3
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.5e-65 253.4 223 62.3
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.5e-65 253.4 216 63.4
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 2.0e-65 253.1 217 64.1
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 2.0e-65 253.1 220 63.2
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.0e-65 253.1 223 61.4
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 2.0e-65 253.1 223 62.3
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.6e-65 252.7 214 63.6
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.4e-65 252.3 216 63.4
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 3.4e-65 252.3 216 63.4
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 3.4e-65 252.3 223 61.4
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.4e-65 252.3 221 62.0
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 3.4e-65 252.3 214 62.6
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 4.4e-65 251.9 223 61.4
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 4.4e-65 251.9 217 63.6
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 5.8e-65 251.5 223 61.4
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 5.8e-65 251.5 220 61.8
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 5.8e-65 251.5 217 62.7
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 7.6e-65 251.1 217 63.1
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 7.6e-65 251.1 223 61.4
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 9.9e-65 250.8 216 63.4
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 1.7e-64 250.0 223 61.9
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 1.7e-64 250.0 223 61.4
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 1.7e-64 250.0 219 63.0
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.7e-64 250.0 220 62.3
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.2e-64 249.6 223 61.0
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 2.2e-64 249.6 219 62.1
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 2.9e-64 249.2 215 62.3
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 2.9e-64 249.2 217 63.1
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 2.9e-64 249.2 220 62.3
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 3.8e-64 248.8 216 63.0
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 4.9e-64 248.4 223 60.5
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.9e-64 248.4 223 60.5
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 4.9e-64 248.4 217 61.8
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 6.4e-64 248.1 139 89.9
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 8.4e-64 247.7 215 62.8
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 1.1e-63 247.3 216 62.5
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 1.4e-63 246.9 217 62.2
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 1.4e-63 246.9 223 60.5
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.9e-63 246.5 215 63.3
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 2.4e-63 246.1 218 61.5
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 4.1e-63 245.4 218 61.5
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.1e-62 243.0 219 59.8
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 2.1e-62 243.0 219 59.4
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 7.8e-62 241.1 139 89.9
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.8e-62 241.1 214 62.1
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 1.0e-61 240.7 215 60.5
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-61 240.0 139 89.2
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.7e-61 240.0 139 89.2
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 1.7e-61 240.0 139 89.2
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 1.7e-61 240.0 139 89.2
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 2.3e-61 239.6 139 87.8
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.5e-60 236.9 139 88.5
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 5.6e-60 235.0 132 89.4
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.1e-59 233.0 226 56.6
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 6.2e-59 231.5 206 61.2
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 1.8e-58 229.9 214 59.3
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 5.2e-58 228.4 136 83.8
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 8.9e-58 227.6 123 88.6
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.2e-57 227.3 157 75.2
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 3.4e-57 225.7 215 57.7
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 4.4e-57 225.3 129 85.3
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 7.6e-57 224.6 131 83.2
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 1.3e-56 223.8 150 76.0
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.3e-56 223.8 132 83.3
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.3e-56 223.8 126 86.5
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 1.3e-56 223.8 147 75.5
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 2.2e-56 223.0 180 68.9
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.9e-56 222.6 157 73.9
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 4.9e-56 221.9 135 82.2
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.1e-55 220.7 157 73.2
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.1e-55 220.7 157 73.2
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.1e-55 220.7 126 84.9
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.4e-55 220.3 202 60.4
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 2.4e-55 219.5 129 82.9
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 5.4e-55 218.4 209 59.3
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 5.4e-55 218.4 217 56.7
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.2e-54 217.2 141 76.6
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.6e-54 216.9 215 55.3
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 6.0e-54 214.9 208 58.2
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 5.6e-52 208.4 209 55.5
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.1e-51 206.5 116 85.3
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 6.9e-50 201.4 124 78.2
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 8.4e-48 194.5 208 52.4
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 1.1e-47 194.1 205 54.1
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.0e-45 187.6 162 66.0
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 1.1e-44 184.1 123 69.9
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 8.4e-40 167.9 139 68.3
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 2.1e-38 163.3 155 63.2
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.0e-38 161.8 93 83.9
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 6.0e-38 161.8 220 40.9
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 2.3e-37 159.8 91 84.6
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.2e-33 147.5 93 90.3
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.6e-25 119.8 205 36.6
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 7.6e-25 118.2 157 45.9
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 1.7e-24 117.1 126 46.0
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 8.2e-19 98.2 202 36.1
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 3.1e-18 96.3 51 96.1
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 4.1e-18 95.9 64 75.0
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 9.1e-10 68.2 42 83.3
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.0e-08 64.7 42 76.2
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.2e-08 63.5 42 76.2
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 2.9e-08 63.2 43 76.7
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 5.0e-08 62.4 41 78.0
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 6.5e-08 62.0 49 61.2
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 8.5e-08 61.6 41 80.5
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 3.2e-07 59.7 37 81.1
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 5.5e-07 58.9 126 37.3
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 5.5e-07 58.9 50 68.0
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 4.7e-06 55.8 41 73.2


User provided reference genes

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