Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 3.2e-50 201.4 101 100.0
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 3.2e-50 201.4 101 100.0
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 3.2e-50 201.4 101 100.0
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 8.1e-46 186.8 101 92.1
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 8.1e-46 186.8 101 92.1
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 4.5e-44 181.0 101 92.1
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 3.7e-38 161.4 101 82.2
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 5.0e-35 151.0 101 80.2
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 1.9e-34 149.1 101 80.2
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 5.5e-34 147.5 93 81.7
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 1.6e-33 146.0 93 80.6
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 1.3e-32 142.9 101 76.2
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 1.3e-32 142.9 101 76.2
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 2.3e-32 142.1 93 80.6
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 1.1e-31 139.8 105 74.3
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 5.7e-31 137.5 102 74.5
C05p45210 Brassica napus HOM05D007107 ORTHO05D009198 7.2e-26 120.6 90 72.2
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 1.6e-25 119.4 96 72.9
BcaB06g26031 Brassica carinata HOM05D007107 ORTHO05D009198 6.3e-22 107.5 98 66.3
BcaC05g28441 Brassica carinata HOM05D007107 ORTHO05D009198 3.0e-16 88.6 68 72.1
THA.LOC104826494 Tarenaya hassleriana HOM05D007107 ORTHO05D009198 1.5e-15 86.3 93 54.8
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.0e-15 85.9 75 61.3
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.1e-13 80.1 87 56.3
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.1e-13 80.1 87 56.3
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 1.1e-13 80.1 75 60.0
Aa31LG8G6390 Aethionema arabicum HOM05D007107 ORTHO05D009198 5.3e-13 77.8 81 55.6
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 9.1e-13 77.0 76 56.6
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.6e-12 76.3 76 56.6
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 2.0e-12 75.9 76 56.6
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 4.5e-12 74.7 76 51.3
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 5.9e-12 74.3 62 67.7
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 2.2e-11 72.4 87 51.7
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.9e-11 72.0 80 52.5
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 3.8e-11 71.6 90 50.0
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 6.5e-11 70.9 78 56.4
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 8.5e-11 70.5 76 48.7
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.1e-10 70.1 76 48.7
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.1e-10 70.1 93 45.2
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.9e-10 69.3 78 52.6
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.9e-10 69.3 92 46.7
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 2.5e-10 68.9 64 57.8
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 2.5e-10 68.9 92 45.7
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 3.2e-10 68.6 72 56.9
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 5.5e-10 67.8 72 51.4
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 5.5e-10 67.8 73 54.8
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 7.2e-10 67.4 74 54.1
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 7.2e-10 67.4 92 48.9
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 9.4e-10 67.0 68 54.4
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 9.4e-10 67.0 87 49.4
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.2e-09 66.6 77 49.4
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 1.2e-09 66.6 77 49.4
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.2e-09 66.6 62 59.7
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 1.6e-09 66.2 101 42.6
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 2.1e-09 65.9 99 45.5
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 2.1e-09 65.9 67 50.7
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 2.1e-09 65.9 78 51.3
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 2.1e-09 65.9 78 51.3
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 2.1e-09 65.9 96 42.7
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.7e-09 65.5 92 47.8
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 3.6e-09 65.1 64 53.1
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 3.6e-09 65.1 79 51.9
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 4.7e-09 64.7 72 50.0
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 4.7e-09 64.7 72 50.0
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 6.1e-09 64.3 76 51.3
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 8.0e-09 63.9 99 43.4
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 8.0e-09 63.9 102 41.2
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 1.0e-08 63.5 73 53.4
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.0e-08 63.5 72 48.6
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 1.0e-08 63.5 69 53.6
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 1.8e-08 62.8 78 50.0
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 3.0e-08 62.0 74 52.7
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 3.0e-08 62.0 78 46.2
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 8.8e-08 60.5 67 49.3
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 8.8e-08 60.5 73 50.7
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.1e-07 60.1 79 46.8
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 1.5e-07 59.7 77 49.4
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 2.0e-07 59.3 88 45.5
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 3.3e-07 58.5 94 41.5
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 5.7e-07 57.8 69 50.7
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 7.5e-07 57.4 74 47.3
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 9.7e-07 57.0 63 55.6
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 1.3e-06 56.6 105 41.0
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.2e-06 55.8 88 40.9
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 2.2e-06 55.8 93 46.2
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.8e-06 55.5 62 50.0
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 2.8e-06 55.5 74 45.9
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 2.8e-06 55.5 78 46.2
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 4.8e-06 54.7 98 39.8
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 4.8e-06 54.7 65 52.3


User provided reference genes

Program Settings