Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 6.0e-100 367.5 181 100.0
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 1.1e-98 363.2 181 98.9
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 2.0e-39 166.4 141 66.0
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 5.9e-39 164.9 142 64.8
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 1.3e-38 163.7 112 78.6
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.3e-38 163.7 142 64.1
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.7e-38 163.3 149 62.4
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 2.3e-38 162.9 149 61.1
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 5.0e-38 161.8 149 59.7
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 6.6e-38 161.4 149 61.1
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 8.6e-38 161.0 149 61.1
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 1.1e-37 160.6 149 60.4
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 1.5e-37 160.2 149 61.1
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 7.3e-37 157.9 149 57.7
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.0e-35 154.1 149 55.7
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 4.3e-29 132.1 150 49.3
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 5.4e-24 115.2 76 78.9
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 7.8e-23 111.3 147 45.6
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 1.7e-22 110.2 143 44.1
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.7e-22 110.2 143 44.8
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 3.0e-22 109.4 98 60.2
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 6.6e-22 108.2 109 51.4
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 8.6e-22 107.8 103 56.3
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.1e-21 107.5 106 55.7
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.5e-21 107.1 103 56.3
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.9e-21 106.7 143 43.4
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 3.3e-21 105.9 105 51.4
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 4.3e-21 105.5 105 54.3
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 5.6e-21 105.1 100 57.0
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 5.6e-21 105.1 105 53.3
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 5.6e-21 105.1 105 56.2
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 7.3e-21 104.8 106 55.7
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 9.5e-21 104.4 100 55.0
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 9.5e-21 104.4 154 39.6
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 1.2e-20 104.0 107 52.3
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.6e-20 103.6 105 53.3
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 2.1e-20 103.2 155 42.6
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.8e-20 102.8 106 51.9
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.6e-20 102.4 99 56.6
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.6e-20 102.4 99 56.6
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 4.7e-20 102.1 96 55.2
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 4.7e-20 102.1 155 40.0
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 4.7e-20 102.1 147 40.8
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 4.7e-20 102.1 106 52.8
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 4.7e-20 102.1 99 56.6
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 8.1e-20 101.3 105 50.5
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 8.1e-20 101.3 147 39.5
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 1.1e-19 100.9 97 56.7
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.1e-19 100.9 99 53.5
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 1.1e-19 100.9 100 55.0
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 1.4e-19 100.5 106 52.8
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.4e-19 100.5 99 54.5
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.8e-19 100.1 98 53.1
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 3.1e-19 99.4 105 50.5
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 3.1e-19 99.4 105 50.5
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 3.1e-19 99.4 97 58.8
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 3.1e-19 99.4 105 49.5
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 4.0e-19 99.0 95 54.7
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 4.0e-19 99.0 147 38.8
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 4.0e-19 99.0 105 48.6
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 5.2e-19 98.6 115 45.2
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 6.8e-19 98.2 155 38.7
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 6.8e-19 98.2 106 50.9
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 6.8e-19 98.2 115 45.2
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 6.8e-19 98.2 103 51.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 8.9e-19 97.8 106 50.9
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 1.2e-18 97.4 155 38.7
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 1.2e-18 97.4 106 50.0
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.2e-18 97.4 96 55.2
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 1.5e-18 97.1 95 53.7
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 1.5e-18 97.1 155 38.7
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 2.6e-18 96.3 94 54.3
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 2.6e-18 96.3 106 50.9
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.4e-18 95.9 100 53.0
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.4e-18 95.9 100 53.0
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 3.4e-18 95.9 99 56.6
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 3.4e-18 95.9 95 52.6
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 5.8e-18 95.1 105 47.6
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 7.5e-18 94.7 94 53.2
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 7.5e-18 94.7 155 37.4
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 7.5e-18 94.7 100 53.0
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 2.2e-17 93.2 112 47.3
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 2.9e-17 92.8 106 49.1
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.7e-17 92.4 106 49.1
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 3.7e-17 92.4 97 53.6
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 4.9e-17 92.0 93 52.7
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 6.4e-17 91.7 92 54.3
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.4e-16 90.5 98 50.0
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 7.1e-16 88.2 137 41.6
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 7.1e-16 88.2 93 50.5
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 1.2e-15 87.4 100 48.0
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 3.5e-15 85.9 99 50.5
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 6.0e-15 85.1 95 47.4
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 3.0e-14 82.8 99 47.5
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 5.1e-14 82.0 87 50.6
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 7.3e-13 78.2 102 46.1
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 1.2e-12 77.4 139 37.4
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 8.1e-12 74.7 84 47.6
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.1e-11 74.3 97 42.3
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 5.2e-11 72.0 104 43.3
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.0e-10 70.1 146 31.5
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.4e-10 68.9 160 31.9
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 9.9e-10 67.8 145 35.9
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 9.9e-10 67.8 87 44.8
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 4.9e-09 65.5 83 42.2
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 1.4e-08 63.9 61 54.1
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 1.6e-07 60.5 51 51.0


User provided reference genes

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