Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p43330 Brassica napus HOM05D000738 ORTHO05D019834 3.5e-55 218.0 108 100.0
A01p33930 Brassica napus HOM05D000738 ORTHO05D019834 1.2e-47 193.0 100 97.0
CARHR096730 Cardamine hirsuta HOM05D000738 ORTHO05D000675 6.7e-14 80.9 67 65.7
Thhalv10020784m.g Eutrema salsugineum HOM05D000738 ORTHO05D000675 6.7e-14 80.9 67 65.7
Sp3g18880 Schrenkiella parvula HOM05D000738 ORTHO05D000675 6.7e-14 80.9 67 65.7
Aa31LG8G7680 Aethionema arabicum HOM05D000738 ORTHO05D000675 1.1e-13 80.1 67 65.7
AL3G34800 Arabidopsis lyrata HOM05D000738 ORTHO05D000675 1.5e-13 79.7 67 64.2
AT3G20860 Arabidopsis thaliana HOM05D000738 ORTHO05D000675 1.5e-13 79.7 67 64.2
BcaC05g28198 Brassica carinata HOM05D000738 ORTHO05D000675 1.5e-13 79.7 67 64.2
A05p27860 Brassica napus HOM05D000738 ORTHO05D000675 1.5e-13 79.7 67 64.2
C05p43200 Brassica napus HOM05D000738 ORTHO05D000675 1.5e-13 79.7 67 64.2
BolC5t33050H Brassica oleracea HOM05D000738 ORTHO05D000675 1.5e-13 79.7 67 64.2
BraA05t21673Z Brassica rapa HOM05D000738 ORTHO05D000675 1.5e-13 79.7 67 64.2
Carub.0003s2083 Capsella rubella HOM05D000738 ORTHO05D000675 1.5e-13 79.7 67 64.2
THA.LOC104817900 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 1.7e-12 76.3 66 62.1
COL.COLO4_24847 Corchorus olitorius HOM05D000738 ORTHO05D000675 9.1e-11 70.5 65 58.5
Nn7g36177 Nelumbo nucifera HOM05D000738 ORTHO05D000675 1.6e-10 69.7 63 60.3
Peaxi162Scf00029g03217 Petunia axillaris HOM05D000738 ORTHO05D000675 2.0e-10 69.3 57 64.9
Duzib168G2329 Durio zibethinus HOM05D000738 ORTHO05D000675 2.6e-10 68.9 58 62.1
CSS0024240 Camellia sinensis var. sinensis HOM05D000738 ORTHO05D000675 3.5e-10 68.6 57 63.2
Gohir.D08G023500 Gossypium hirsutum HOM05D000738 ORTHO05D000675 3.5e-10 68.6 65 58.5
Gorai.004G018800 Gossypium raimondii HOM05D000738 ORTHO05D000675 3.5e-10 68.6 65 58.5
Ciclev10015011m.g Citrus clementina HOM05D000738 ORTHO05D000675 4.5e-10 68.2 59 62.7
Gohir.A08G013100 Gossypium hirsutum HOM05D000738 ORTHO05D000675 4.5e-10 68.2 65 58.5
Nitab4.5_0002766g0080 Nicotiana tabacum HOM05D000738 ORTHO05D000675 4.5e-10 68.2 57 63.2
Nitab4.5_0002766g0090 Nicotiana tabacum HOM05D000455 ORTHO05D010375 4.5e-10 68.2 57 63.2
PGSC0003DMG400013590 Solanum tuberosum HOM05D000738 ORTHO05D000675 4.5e-10 68.2 65 58.5
Cc06_g16510 Coffea canephora HOM05D000738 ORTHO05D000675 5.9e-10 67.8 60 61.7
Nitab4.5_0004806g0050 Nicotiana tabacum HOM05D000738 ORTHO05D019834 7.7e-10 67.4 57 63.2
Nitab4.5_0008868g0030 Nicotiana tabacum HOM05D000738 ORTHO05D000675 7.7e-10 67.4 57 63.2
SalBow1G8417 Salvia bowleyana HOM05D000738 ORTHO05D000675 7.7e-10 67.4 59 61.0
Dinv18092 Davidia involucrata HOM05D000738 ORTHO05D000675 1.0e-09 67.0 60 63.3
Lj7C597T25 Lonicera japonica HOM05D000738 ORTHO05D000675 1.0e-09 67.0 56 64.3
CAN.G115.7 Capsicum annuum HOM05D000738 ORTHO05D000675 1.3e-09 66.6 58 60.3
CiPaw.10G030500 Carya illinoinensis HOM05D000738 ORTHO05D000675 1.3e-09 66.6 62 58.1
Peaxi162Scf00406g00614 Petunia axillaris HOM05D000738 ORTHO05D000675 1.3e-09 66.6 58 60.3
Sopen03g013600 Solanum pennellii HOM05D000738 ORTHO05D000675 1.3e-09 66.6 58 60.3
PGSC0003DMG400033929 Solanum tuberosum HOM05D000738 ORTHO05D000675 1.3e-09 66.6 58 60.3
Thecc.09G228100 Theobroma cacao HOM05D000738 ORTHO05D000675 1.3e-09 66.6 62 58.1
Solyc03g059250.3 Solanum lycopersicum HOM05D000738 ORTHO05D000675 1.7e-09 66.2 58 60.3
Cc01_g04480 Coffea canephora HOM05D000738 ORTHO05D000675 2.2e-09 65.9 59 59.3
Peaxi162Scf00189g00525 Petunia axillaris HOM05D000738 ORTHO05D000675 2.2e-09 65.9 62 56.5
Solyc11g061960.2 Solanum lycopersicum HOM05D000738 ORTHO05D000675 2.2e-09 65.9 64 57.8
Sopen11g023760 Solanum pennellii HOM05D000738 ORTHO05D000675 2.2e-09 65.9 64 57.8
CSS0039295 Camellia sinensis var. sinensis HOM05D000738 ORTHO05D000675 2.9e-09 65.5 52 67.3
Hma1.2p1_0621F.1_g190600 Hydrangea macrophylla HOM05D000738 ORTHO05D000675 2.9e-09 65.5 52 67.3
Nitab4.5_0004063g0020 Nicotiana tabacum HOM05D000738 ORTHO05D000675 2.9e-09 65.5 62 54.8
MSTRG.17583 Avicennia marina HOM05D000738 ORTHO05D019834 3.8e-09 65.1 53 62.3
Dinv24118 Davidia involucrata HOM05D000738 ORTHO05D000675 3.8e-09 65.1 59 62.7
Nitab4.5_0003074g0020 Nicotiana tabacum HOM05D000738 ORTHO05D000675 3.8e-09 65.1 58 56.9
Solyc11g150140.1 Solanum lycopersicum HOM05D000738 ORTHO05D019834 3.8e-09 65.1 64 56.2
MSTRG.10827 Avicennia marina HOM05D000738 ORTHO05D000675 5.0e-09 64.7 60 58.3
Gohir.A09G124500 Gossypium hirsutum HOM05D000738 ORTHO05D000675 5.0e-09 64.7 58 58.6
Sc16g0011580 Simmondsia chinensis HOM05D000738 ORTHO05D000675 5.0e-09 64.7 53 62.3
DCAR_013574 Daucus carota HOM05D000738 ORTHO05D000675 6.5e-09 64.3 61 55.7
Potri.006G056300 Populus trichocarpa HOM05D000738 ORTHO05D000675 6.5e-09 64.3 58 60.3
Potri.016G051900 Populus trichocarpa HOM05D000738 ORTHO05D000675 6.5e-09 64.3 54 63.0
Sabra06G0039800 Salix brachista HOM05D000738 ORTHO05D004372 6.5e-09 64.3 58 60.3
unitig_748.g7238 Utricularia gibba HOM05D000738 ORTHO05D000675 6.5e-09 64.3 78 50.0
Actinidia20287 Actinidia chinensis HOM05D000738 ORTHO05D000675 8.5e-09 63.9 54 63.0
Cfa016872 Carpinus fangiana HOM05D000738 ORTHO05D000675 8.5e-09 63.9 55 60.0
ClCG04G000580 Citrullus lanatus HOM05D000738 ORTHO05D000675 8.5e-09 63.9 62 56.5
COL.COLO4_28710 Corchorus olitorius HOM05D000738 ORTHO05D000675 8.5e-09 63.9 54 64.8
Haze_19918 Corylus avellana HOM05D000738 ORTHO05D000675 8.5e-09 63.9 55 60.0
MELO3C009063.2 Cucumis melo HOM05D000738 ORTHO05D000675 8.5e-09 63.9 62 56.5
CsaV3_4G031440 Cucumis sativus L. HOM05D000738 ORTHO05D000675 8.5e-09 63.9 62 56.5
Lj1g0022537 Lotus japonicus HOM05D000738 ORTHO05D000675 8.5e-09 63.9 59 59.3
Nitab4.5_0000452g0100 Nicotiana tabacum HOM05D000738 ORTHO05D000675 8.5e-09 63.9 58 56.9
THA.LOC104819141 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 8.5e-09 63.9 59 59.3
Atru.chr3.2596 Acer truncatum HOM05D000738 ORTHO05D000675 1.1e-08 63.5 55 60.0
Aqoxy1G00216 Aquilegia oxysepala HOM05D000738 ORTHO05D000675 1.1e-08 63.5 60 58.3
AUR62000097 Chenopodium quinoa HOM05D000738 ORTHO05D000675 1.1e-08 63.5 53 64.2
AUR62019271 Chenopodium quinoa HOM05D000738 ORTHO05D000675 1.1e-08 63.5 53 64.2
Migut.K00067 Erythranthe guttata HOM05D000738 ORTHO05D000675 1.1e-08 63.5 59 57.6
MD12G1065800 Malus domestica HOM05D000738 ORTHO05D000675 1.1e-08 63.5 62 54.8
Nitab4.5_0001347g0070 Nicotiana tabacum HOM05D000738 ORTHO05D000675 1.1e-08 63.5 58 56.9
PSO384G1117 Papaver somniferum HOM05D000738 ORTHO05D000675 1.1e-08 63.5 61 57.4
Psat3g071040 Pisum sativum HOM05D000738 ORTHO05D000675 1.1e-08 63.5 60 58.3
SGA_v2.0_scaffold94G28450 Striga asiatica HOM05D000738 ORTHO05D000675 1.1e-08 63.5 59 59.3
Gohir.D01G186000 Gossypium hirsutum HOM05D000738 ORTHO05D000675 1.5e-08 63.2 53 64.2
Gorai.002G229400 Gossypium raimondii HOM05D000738 ORTHO05D000675 1.5e-08 63.2 53 64.2
Solyc10g080390.2 Solanum lycopersicum HOM05D000738 ORTHO05D000675 1.5e-08 63.2 56 58.9
Sopen10g030930 Solanum pennellii HOM05D000738 ORTHO05D000675 1.5e-08 63.2 56 58.9
PGSC0003DMG401023679 Solanum tuberosum HOM05D000738 ORTHO05D000675 1.5e-08 63.2 56 58.9
TAR369G0947 Trochodendron aralioides HOM05D000738 ORTHO05D000675 1.5e-08 63.2 53 64.2
GSVIVG01033338001 Vitis vinifera HOM05D000738 ORTHO05D000675 1.5e-08 63.2 51 66.7
Actinidia09363 Actinidia chinensis HOM05D000738 ORTHO05D000675 1.9e-08 62.8 54 61.1
Cpa.g.sc84.79 Carica papaya HOM05D000738 ORTHO05D000675 1.9e-08 62.8 66 53.0
Ca_08486_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 1.9e-08 62.8 60 56.7
QL07p021913 Quercus lobata HOM05D000738 ORTHO05D000675 1.9e-08 62.8 52 63.5
Thecc.05G164400 Theobroma cacao HOM05D000738 ORTHO05D000675 1.9e-08 62.8 54 63.0
vmacro04185 Vaccinium macrocarpon HOM05D000738 ORTHO05D000675 1.9e-08 62.8 54 61.1
Gohir.D09G121500 Gossypium hirsutum HOM05D000738 ORTHO05D000675 2.5e-08 62.4 58 56.9
Gorai.006G139000 Gossypium raimondii HOM05D000738 ORTHO05D000675 2.5e-08 62.4 58 56.9
MBI01_g27618_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D000675 2.5e-08 62.4 51 64.7
Rhsim03G0011700 Rhododendron simsii HOM05D000738 ORTHO05D000675 2.5e-08 62.4 56 60.7
TAR623G1326 Trochodendron aralioides HOM05D000738 ORTHO05D000675 2.5e-08 62.4 51 64.7
TAR623G1363 Trochodendron aralioides HOM05D000738 ORTHO05D000675 2.5e-08 62.4 51 64.7
vmacro07871 Vaccinium macrocarpon HOM05D000738 ORTHO05D000675 2.5e-08 62.4 52 65.4
GSVIVG01025304001 Vitis vinifera HOM05D000738 ORTHO05D000675 2.5e-08 62.4 52 63.5
EL10Ac4g10298 Beta vulgaris HOM05D000738 ORTHO05D000675 3.2e-08 62.0 57 57.9
CiPaw.09G034300 Carya illinoinensis HOM05D000738 ORTHO05D000675 3.2e-08 62.0 59 55.9
Duzib093G0290 Durio zibethinus HOM05D000738 ORTHO05D000675 3.2e-08 62.0 54 61.1
Duzib106G1391 Durio zibethinus HOM05D000738 ORTHO05D000675 3.2e-08 62.0 54 61.1
Eucgr.A02404 Eucalyptus grandis HOM05D000738 ORTHO05D000675 3.2e-08 62.0 65 50.8
Lsat_1_v5_gn_5_163821 Lactuca sativa HOM05D000738 ORTHO05D000675 3.2e-08 62.0 53 62.3
MD14G1065800 Malus domestica HOM05D000738 ORTHO05D000675 3.2e-08 62.0 54 61.1
Oeu015674.3 Olea europaea HOM05D000738 ORTHO05D000675 3.2e-08 62.0 79 48.1
Oeu043300.3 Olea europaea HOM05D000738 ORTHO05D000675 3.2e-08 62.0 55 61.8
Rhsim13G0223900 Rhododendron simsii HOM05D000738 ORTHO05D000675 3.2e-08 62.0 62 54.8
Hund07533 Selenicereus undatus HOM05D000738 ORTHO05D000675 3.2e-08 62.0 53 60.4
Hund19170 Selenicereus undatus HOM05D000738 ORTHO05D000675 3.2e-08 62.0 51 64.7
TPR.G3887 Trifolium pratense HOM05D000738 ORTHO05D000675 3.2e-08 62.0 60 56.7
TWI60G1577 Tripterygium wilfordii HOM05D000738 ORTHO05D000675 3.2e-08 62.0 55 60.0
Ah.06g193640 Amaranthus hybridus HOM05D000738 ORTHO05D000675 4.2e-08 61.6 59 55.9
HanXRQChr13g0390641 Helianthus annuus HOM05D000738 ORTHO05D000675 4.2e-08 61.6 53 62.3
Prupe.7G068700 Prunus persica HOM05D000738 ORTHO05D000675 4.2e-08 61.6 54 59.3
PGR119G2358 Punica granatum HOM05D000738 ORTHO05D000675 4.2e-08 61.6 61 54.1
RcHm_v2.0_Chr3g0480931 Rosa chinensis HOM05D000738 ORTHO05D000675 4.2e-08 61.6 54 59.3
Hund24748 Selenicereus undatus HOM05D000738 ORTHO05D000675 4.2e-08 61.6 50 66.0
arahy.Tifrunner.gnm1.ann1.3QQJ98 Arachis hypogaea HOM05D000738 ORTHO05D000675 5.5e-08 61.2 62 54.8
arahy.Tifrunner.gnm1.ann1.TH8WCF Arachis hypogaea HOM05D000738 ORTHO05D000675 5.5e-08 61.2 62 54.8
MSTRG.26105 Avicennia marina HOM05D000738 ORTHO05D000675 5.5e-08 61.2 60 55.0
Cpa.g.sc85.129 Carica papaya HOM05D000738 ORTHO05D000675 5.5e-08 61.2 61 54.1
Ciclev10004527m.g Citrus clementina HOM05D000738 ORTHO05D000675 5.5e-08 61.2 54 59.3
Lalb_Chr20g0110931 Lupinus albus HOM05D000738 ORTHO05D000675 5.5e-08 61.2 60 56.7
Sed0013343 Sechium edule HOM05D000738 ORTHO05D000675 5.5e-08 61.2 62 53.2
MSTRG.6455 Avicennia marina HOM05D000738 ORTHO05D000675 7.2e-08 60.8 60 51.7
DCAR_002058 Daucus carota HOM05D000738 ORTHO05D000675 7.2e-08 60.8 75 50.7
DCAR_017001 Daucus carota HOM05D000738 ORTHO05D000675 7.2e-08 60.8 53 60.4
Sc19g0006830 Simmondsia chinensis HOM05D000738 ORTHO05D000675 7.2e-08 60.8 51 62.7
HPP92_015772 Vanilla planifolia HOM05D000738 ORTHO05D023254 7.2e-08 60.8 50 64.0
MSTRG.18412 Avicennia marina HOM05D000738 ORTHO05D000675 9.4e-08 60.5 61 54.1
EL10Ac3g06992 Beta vulgaris HOM05D000738 ORTHO05D000675 9.4e-08 60.5 51 60.8
CANSAT80G0761 Cannabis sativa HOM05D000738 ORTHO05D000675 9.4e-08 60.5 59 55.9
AUR62024385 Chenopodium quinoa HOM05D000738 ORTHO05D000675 9.4e-08 60.5 51 60.8
AUR62025969 Chenopodium quinoa HOM05D000738 ORTHO05D000675 9.4e-08 60.5 51 60.8
ECA248G3361 Erigeron canadensis HOM05D000738 ORTHO05D000675 9.4e-08 60.5 53 60.4
FvH4_6g23080 Fragaria vesca HOM05D000738 ORTHO05D000675 9.4e-08 60.5 54 57.4
FAN09G1318 Fragaria x ananassa HOM05D000738 ORTHO05D000675 9.4e-08 60.5 54 57.4
FAN14G5456 Fragaria x ananassa HOM05D000738 ORTHO05D000675 9.4e-08 60.5 54 57.4
Lalb_Chr25g0287481 Lupinus albus HOM05D000738 ORTHO05D000675 9.4e-08 60.5 73 50.7
Manes.06G166700 Manihot esculenta HOM05D000738 ORTHO05D000675 9.4e-08 60.5 54 61.1
CiPaw.13G163400 Carya illinoinensis HOM05D000738 ORTHO05D000675 1.2e-07 60.1 52 57.7
Migut.J01790 Erythranthe guttata HOM05D000738 ORTHO05D000675 1.2e-07 60.1 58 56.9
Medtr7g092360 Medicago truncatula HOM05D000738 ORTHO05D000675 1.2e-07 60.1 59 55.9
Os02g0590800 Oryza sativa ssp. japonica HOM05D000738 ORTHO05D000675 1.2e-07 60.1 51 62.7
Phvul.001G137000 Phaseolus vulgaris HOM05D000738 ORTHO05D000675 1.2e-07 60.1 59 55.9
Zm00001eb245690 Zea mays HOM05D000738 ORTHO05D000675 1.2e-07 60.1 51 62.7
CAN.G222.95 Capsicum annuum HOM05D000738 ORTHO05D000675 1.6e-07 59.7 58 53.4
FAN05G4282 Fragaria x ananassa HOM05D000738 ORTHO05D000675 1.6e-07 59.7 54 55.6
Glyma.03G140100 Glycine max HOM05D000738 ORTHO05D000675 1.6e-07 59.7 59 55.9
Manes.09G029900 Manihot esculenta HOM05D000738 ORTHO05D000675 1.6e-07 59.7 52 61.5
Medtr1g052115 Medicago truncatula HOM05D000738 ORTHO05D000675 1.6e-07 59.7 59 54.2
Oeu008123.1 Olea europaea HOM05D000738 ORTHO05D000675 1.6e-07 59.7 58 55.2
QL01p005282 Quercus lobata HOM05D000738 ORTHO05D000675 1.6e-07 59.7 61 52.5
Sed0010581 Sechium edule HOM05D000738 ORTHO05D000675 1.6e-07 59.7 62 51.6
Manes.08G047800 Manihot esculenta HOM05D000738 ORTHO05D000675 2.1e-07 59.3 52 61.5
MBI11_g35026_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D000675 2.7e-07 58.9 55 58.2
SGA_v2.0_scaffold105G30456 Striga asiatica HOM05D000738 ORTHO05D000675 2.7e-07 58.9 52 63.5
Psat6g090920 Pisum sativum HOM05D000738 ORTHO05D000675 3.6e-07 58.5 52 59.6
PGR004G0104 Punica granatum HOM05D000738 ORTHO05D000675 3.6e-07 58.5 54 59.3
SalBow6G3513 Salvia bowleyana HOM05D000738 ORTHO05D000675 3.6e-07 58.5 60 55.0
Migut.D00579 Erythranthe guttata HOM05D000738 ORTHO05D000675 4.7e-07 58.2 56 55.4
Glyma.19G143000 Glycine max HOM05D000738 ORTHO05D000675 4.7e-07 58.2 52 59.6
VMungo1383G1315 Vigna mungo HOM05D000738 ORTHO05D000675 4.7e-07 58.2 52 59.6
ATR0605G360 Amborella trichopoda HOM05D000738 ORTHO05D000675 6.1e-07 57.8 57 57.9
HanXRQChr01g0008431 Helianthus annuus HOM05D000738 ORTHO05D000675 6.1e-07 57.8 53 60.4
Potri.001G018700 Populus trichocarpa HOM05D000738 ORTHO05D000675 6.1e-07 57.8 61 50.8
TWI77G0208 Tripterygium wilfordii HOM05D000738 ORTHO05D000675 6.1e-07 57.8 52 57.7
Lj5g0022925 Lotus japonicus HOM05D000738 ORTHO05D000675 8.0e-07 57.4 81 44.4
Sabra01G0013300 Salix brachista HOM05D000738 ORTHO05D000675 8.0e-07 57.4 51 56.9
TPR.G22786 Trifolium pratense HOM05D000738 ORTHO05D000675 8.0e-07 57.4 52 57.7
SGA_v2.0_scaffold247G44852 Striga asiatica HOM05D000738 ORTHO05D000675 1.0e-06 57.0 60 48.3
Glyma.10G094500 Glycine max HOM05D000738 ORTHO05D000675 1.4e-06 56.6 61 55.7
Potri.003G205400 Populus trichocarpa HOM05D000738 ORTHO05D000675 1.4e-06 56.6 54 57.4
Glyma.02G180100 Glycine max HOM05D000738 ORTHO05D000675 2.3e-06 55.8 61 55.7
Lj3g0012101 Lotus japonicus HOM05D000738 ORTHO05D000675 4.0e-06 55.1 79 45.6
THA.LOC104799564 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 6.7e-06 54.3 56 58.9
Psat5g260480 Pisum sativum HOM05D000738 ORTHO05D000675 8.8e-06 53.9 69 47.8


User provided reference genes

Program Settings