Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 2.5e-85 318.9 181 100.0
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 6.3e-81 304.3 181 95.6
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-56 223.8 142 95.1
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 7.0e-56 221.1 142 94.4
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 3.0e-43 179.1 142 68.3
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 8.9e-43 177.6 142 67.6
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 8.9e-43 177.6 142 67.6
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 8.9e-43 177.6 142 67.6
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 8.9e-43 177.6 142 67.6
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 1.2e-42 177.2 142 69.7
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-42 176.8 142 68.3
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 7.5e-42 174.5 144 71.5
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-39 167.2 140 64.3
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 1.6e-39 166.8 140 64.3
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-39 166.4 140 64.3
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 7.8e-39 164.5 140 63.6
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.3e-38 163.7 140 62.9
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 2.8e-36 156.0 143 75.5
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 5.2e-35 151.8 145 71.0
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 2.6e-34 149.4 142 69.7
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.2e-31 140.6 140 65.7
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.6e-31 138.7 142 57.7
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.3e-21 105.9 142 61.3
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 2.8e-20 102.8 135 45.9
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 4.0e-19 99.0 142 46.5
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 4.4e-18 95.5 141 42.6
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.9e-16 90.1 56 73.2
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.9e-16 90.1 138 38.4
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 4.1e-16 89.0 54 75.9
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 4.1e-16 89.0 56 71.4
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 7.1e-16 88.2 56 73.2
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 9.2e-16 87.8 139 39.6
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 3.5e-15 85.9 54 72.2
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-15 85.9 54 74.1
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-15 85.9 54 72.2
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 3.5e-15 85.9 54 72.2
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 3.5e-15 85.9 54 74.1
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 3.5e-15 85.9 51 74.5
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 3.5e-15 85.9 138 37.7
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 3.5e-15 85.9 138 40.6
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 4.6e-15 85.5 66 66.7
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 4.6e-15 85.5 66 66.7
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 7.8e-15 84.7 56 71.4
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.7e-14 83.6 133 36.8
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 1.7e-14 83.6 54 72.2
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-14 83.6 54 72.2
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 1.7e-14 83.6 54 72.2
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.7e-14 83.6 139 38.8
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.3e-14 83.2 139 41.0
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.9e-14 82.4 54 66.7
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 3.9e-14 82.4 54 66.7
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 5.1e-14 82.0 53 69.8
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 6.6e-14 81.6 66 56.1
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 6.6e-14 81.6 54 66.7
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 6.6e-14 81.6 53 64.2
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.1e-13 80.9 77 48.1
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.1e-13 80.9 74 54.1
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-13 80.9 143 36.4
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.1e-13 80.9 49 67.3
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.5e-13 80.5 54 64.8
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.5e-13 80.5 54 64.8
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.9e-13 80.1 54 64.8
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.3e-13 79.0 70 51.4
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 4.3e-13 79.0 53 66.0
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 4.3e-13 79.0 52 63.5
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.3e-13 79.0 52 63.5
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.3e-13 79.0 52 63.5
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.3e-13 79.0 52 63.5
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 5.6e-13 78.6 84 47.6
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 5.6e-13 78.6 78 52.6
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 5.6e-13 78.6 50 68.0
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 7.3e-13 78.2 55 65.5
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 7.3e-13 78.2 53 64.2
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 9.6e-13 77.8 54 61.1
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 1.2e-12 77.4 53 60.4
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.2e-12 77.4 54 63.0
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.6e-12 77.0 50 66.0
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.6e-12 77.0 82 53.7
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.1e-12 76.6 52 61.5
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 2.1e-12 76.6 54 63.0
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.1e-12 76.6 53 62.3
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 2.1e-12 76.6 53 60.4
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.8e-12 76.3 168 33.9
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.8e-12 76.3 141 34.0
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 2.8e-12 76.3 50 64.0
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.6e-12 75.9 141 34.0
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 3.6e-12 75.9 134 36.6
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 4.7e-12 75.5 51 66.7
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 4.7e-12 75.5 83 50.6
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 4.7e-12 75.5 54 61.1
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.7e-12 75.5 82 48.8
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 4.7e-12 75.5 82 48.8
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 6.2e-12 75.1 53 62.3
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.2e-12 75.1 141 34.0
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 6.2e-12 75.1 53 60.4
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 6.2e-12 75.1 54 66.7
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 8.1e-12 74.7 53 62.3
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.1e-11 74.3 53 62.3
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 1.1e-11 74.3 141 33.3
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 1.1e-11 74.3 50 62.0
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.4e-11 73.9 53 58.5
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.4e-11 73.9 53 56.6
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.8e-11 73.6 49 63.3
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.4e-11 73.2 58 56.9
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 2.4e-11 73.2 136 36.8
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.4e-11 73.2 50 60.0
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.4e-11 73.2 54 57.4
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.4e-11 73.2 54 57.4
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 3.1e-11 72.8 55 61.8
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 4.0e-11 72.4 139 33.8
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 4.0e-11 72.4 49 63.3
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 4.0e-11 72.4 142 32.4
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 4.0e-11 72.4 56 60.7
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.2e-11 72.0 50 60.0
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 6.8e-11 71.6 50 58.0
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 6.8e-11 71.6 141 38.3
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 8.9e-11 71.2 49 63.3
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 8.9e-11 71.2 54 57.4
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.5e-10 70.5 50 62.0
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.5e-10 70.5 51 66.7
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.5e-10 70.5 51 66.7
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.6e-10 69.7 54 55.6
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 3.4e-10 69.3 51 58.8
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.4e-10 69.3 53 56.6
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.4e-10 68.9 53 58.5
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.4e-10 68.9 57 57.9
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 4.4e-10 68.9 50 58.0
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 5.8e-10 68.6 56 58.9
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 5.8e-10 68.6 51 60.8
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 7.6e-10 68.2 53 56.6
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 7.6e-10 68.2 139 36.0
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 9.9e-10 67.8 42 71.4
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 9.9e-10 67.8 50 62.0
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 9.9e-10 67.8 54 59.3
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.3e-09 67.4 53 52.8
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 1.7e-09 67.0 53 56.6
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 1.7e-09 67.0 49 61.2
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.7e-09 67.0 50 62.0
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 2.2e-09 66.6 52 61.5
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 2.9e-09 66.2 53 50.9
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.9e-09 66.2 48 62.5
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 3.8e-09 65.9 58 55.2
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 3.8e-09 65.9 61 50.8
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 3.8e-09 65.9 54 57.4
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 4.9e-09 65.5 55 56.4
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 6.4e-09 65.1 52 57.7
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 6.4e-09 65.1 53 60.4
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 8.4e-09 64.7 59 47.5
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 8.4e-09 64.7 53 49.1
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 1.1e-08 64.3 60 48.3
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 1.4e-08 63.9 50 56.0
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 3.2e-08 62.8 52 53.8
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 3.2e-08 62.8 52 53.8
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 4.2e-08 62.4 55 54.5
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.2e-08 62.4 48 60.4
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 4.2e-08 62.4 53 58.5
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 5.4e-08 62.0 54 55.6
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 5.4e-08 62.0 56 55.4
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 5.4e-08 62.0 56 55.4
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 5.4e-08 62.0 56 55.4
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 7.1e-08 61.6 54 55.6
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 9.3e-08 61.2 74 41.9
BcaB04g19133 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-07 60.8 42 71.4
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.2e-07 60.8 54 55.6
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 2.1e-07 60.1 51 51.0
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 2.1e-07 60.1 51 51.0
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 3.5e-07 59.3 58 48.3
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.0e-07 58.5 52 53.8
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 7.8e-07 58.2 52 55.8
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 7.8e-07 58.2 63 49.2
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.0e-06 57.8 55 49.1
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.7e-06 57.0 55 49.1
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 1.7e-06 57.0 61 45.9
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.3e-06 56.6 64 45.3
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 3.0e-06 56.2 55 49.1
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 3.9e-06 55.8 51 54.9
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 3.9e-06 55.8 54 48.1
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 6.6e-06 55.1 45 55.6
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 6.6e-06 55.1 73 38.4


User provided reference genes

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