Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 1.6e-71 272.7 139 100.0
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 1.6e-71 272.7 139 100.0
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 1.3e-70 269.6 139 99.3
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 1.7e-70 269.2 139 99.3
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 1.7e-70 269.2 139 99.3
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 2.2e-65 252.3 139 92.8
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 4.9e-57 224.6 142 84.5
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 5.0e-54 214.5 139 81.3
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 3.3e-53 211.8 139 79.9
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.4e-51 206.5 143 78.3
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 5.7e-50 201.1 141 77.3
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 1.2e-42 176.8 151 68.9
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.6e-28 129.8 159 56.0
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 2.9e-17 92.4 180 40.6
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 3.8e-17 92.0 210 36.2
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 4.2e-16 88.6 206 37.9
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 4.2e-16 88.6 171 39.2
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 7.1e-16 87.8 206 38.3
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 9.3e-16 87.4 151 38.4
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 1.6e-15 86.7 203 35.0
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.6e-15 86.7 180 37.8
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 2.1e-15 86.3 203 35.0
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 4.6e-15 85.1 190 40.0
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 6.0e-15 84.7 204 37.7
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.7e-14 83.2 204 35.8
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 2.3e-14 82.8 200 36.0
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.3e-14 82.8 181 38.7
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 2.3e-14 82.8 209 34.9
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.9e-14 82.0 181 36.5
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 5.1e-14 81.6 207 34.8
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.1e-14 81.6 186 35.5
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 6.6e-14 81.3 196 32.7
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 8.7e-14 80.9 204 36.3
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 8.7e-14 80.9 175 41.1
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 1.5e-13 80.1 194 35.6
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 1.5e-13 80.1 199 35.2
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 1.9e-13 79.7 186 36.6
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 1.9e-13 79.7 186 36.6
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.9e-13 79.7 211 32.7
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.9e-13 79.7 201 36.3
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 3.3e-13 79.0 164 36.0
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.6e-13 78.2 179 36.9
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.6e-13 78.2 200 35.5
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.6e-13 78.2 200 35.5
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 5.6e-13 78.2 195 32.3
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 7.3e-13 77.8 165 37.0
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 9.6e-13 77.4 204 34.8
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 1.3e-12 77.0 200 36.5
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.3e-12 77.0 184 37.0
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 1.3e-12 77.0 188 36.7
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 1.3e-12 77.0 187 35.3
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.6e-12 76.6 200 35.0
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 2.8e-12 75.9 213 31.0
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.8e-12 75.9 169 39.6
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 3.6e-12 75.5 181 36.5
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 3.6e-12 75.5 188 34.6
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 3.6e-12 75.5 185 37.3
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 3.6e-12 75.5 213 32.9
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 4.8e-12 75.1 180 37.8
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.8e-12 75.1 180 37.8
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.8e-12 75.1 180 37.8
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 6.2e-12 74.7 175 34.9
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 8.1e-12 74.3 204 35.8
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 1.4e-11 73.6 164 39.6
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 1.4e-11 73.6 187 33.2
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 1.8e-11 73.2 213 32.9
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.4e-11 72.8 214 32.7
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 3.1e-11 72.4 182 34.6
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.1e-11 72.4 169 37.3
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.0e-11 72.0 181 32.6
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 5.3e-11 71.6 198 35.9
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 5.3e-11 71.6 214 32.7
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 9.0e-11 70.9 177 34.5
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.2e-10 70.5 191 33.5
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 1.2e-10 70.5 216 31.9
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 1.2e-10 70.5 184 37.0
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.2e-10 70.5 181 34.3
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.2e-10 70.5 204 33.8
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.2e-10 70.5 204 33.8
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 1.2e-10 70.5 160 36.9
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.5e-10 70.1 214 34.1
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 1.5e-10 70.1 205 34.6
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.0e-10 69.7 204 33.8
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 2.6e-10 69.3 226 33.6
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 3.4e-10 68.9 152 38.2
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 4.4e-10 68.6 177 34.5
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 4.4e-10 68.6 151 35.1
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 4.4e-10 68.6 141 39.0
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 7.6e-10 67.8 204 31.9
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.6e-10 67.8 186 33.3
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 9.9e-10 67.4 209 30.1
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 1.7e-09 66.6 137 37.2
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 2.2e-09 66.2 162 33.3
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 2.9e-09 65.9 174 35.1
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 4.9e-09 65.1 187 31.6
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 4.9e-09 65.1 162 35.8
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 6.4e-09 64.7 206 32.5
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.4e-08 62.8 52 67.3
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 2.4e-08 62.8 187 31.0
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 2.4e-08 62.8 207 33.3
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 3.2e-08 62.4 149 39.6
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.2e-08 62.0 191 31.4
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 5.4e-08 61.6 194 32.0
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 5.4e-08 61.6 186 33.3
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 5.4e-08 61.6 208 28.8
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 5.4e-08 61.6 216 31.9
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 9.3e-08 60.8 225 32.4
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.6e-07 60.1 54 63.0
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 1.6e-07 60.1 177 31.1
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 1.6e-07 60.1 171 35.1
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 3.5e-07 58.9 198 31.8
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 4.6e-07 58.5 166 33.1
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 4.6e-07 58.5 184 32.1
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 6.0e-07 58.2 146 38.4
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 7.9e-07 57.8 98 39.8
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 7.9e-07 57.8 80 52.5
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.3e-06 56.2 54 63.0
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 3.0e-06 55.8 180 31.1
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 6.6e-06 54.7 59 50.8
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 6.6e-06 54.7 180 32.2
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 8.7e-06 54.3 158 31.6


User provided reference genes

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