Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p42510 Brassica napus HOM05D003806 ORTHO05D004346 4.8e-77 291.2 158 100.0
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 1.4e-28 130.2 94 79.8
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 9.8e-22 107.5 113 56.6
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.9e-21 105.1 113 54.9
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.4e-20 102.8 84 67.9
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 5.4e-20 101.7 101 58.4
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 2.1e-16 89.7 101 53.5
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.4e-15 87.0 114 50.9
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 5.2e-15 85.1 132 45.5
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 5.2e-15 85.1 132 45.5
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 8.9e-15 84.3 114 49.1
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.2e-14 84.0 132 44.7
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 1.3e-13 80.5 132 40.2
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 4.9e-13 78.6 132 39.4
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.9e-13 78.6 114 43.0
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.1e-12 77.4 132 38.6
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 1.1e-12 77.4 132 38.6
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 7.1e-12 74.7 64 67.2
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 2.7e-11 72.8 63 66.7
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.7e-11 72.8 63 66.7
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 2.7e-11 72.8 62 67.7
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 7.8e-11 71.2 132 36.4
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.0e-10 70.9 117 42.7
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 3.9e-10 68.9 114 39.5
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 5.1e-10 68.6 62 64.5
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 5.1e-10 68.6 114 39.5
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 2.5e-09 66.2 113 38.9
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 2.5e-09 66.2 113 38.9
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 5.6e-09 65.1 103 38.8
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 7.3e-09 64.7 112 36.6
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 9.5e-09 64.3 258 27.5
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 2.1e-08 63.2 113 38.1
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 2.1e-08 63.2 103 37.9
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 2.1e-08 63.2 121 34.7
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 2.8e-08 62.8 101 41.6
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 2.8e-08 62.8 101 41.6
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.8e-08 62.8 113 35.4
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.6e-08 62.4 113 35.4
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 4.7e-08 62.0 103 38.8
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 6.2e-08 61.6 101 40.6
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 6.2e-08 61.6 113 37.2
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 8.1e-08 61.2 113 35.4
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 1.1e-07 60.8 119 38.7
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.8e-07 60.1 120 39.2
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 3.1e-07 59.3 103 37.9
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 4.0e-07 58.9 101 33.7
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 8.9e-07 57.8 133 36.1
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.2e-06 57.4 110 33.6
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 1.2e-06 57.4 120 32.5
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 2.0e-06 56.6 109 33.9
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.0e-06 56.6 123 32.5
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 2.6e-06 56.2 93 43.0
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.6e-06 56.2 123 31.7
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 4.4e-06 55.5 91 39.6
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.4e-06 55.5 44 65.9
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 5.8e-06 55.1 79 41.8
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 7.6e-06 54.7 114 31.6
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 7.6e-06 54.7 103 35.0


User provided reference genes

Program Settings