Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p41190 Brassica napus HOM05D003422 ORTHO05D004263 1.2e-38 162.5 72 100.0
BolC1t04073H Brassica oleracea HOM05D003422 ORTHO05D004263 2.0e-38 161.8 72 98.6
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 2.6e-38 161.4 71 98.6
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 1.3e-37 159.1 71 97.2
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 1.3e-37 159.1 71 97.2
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 4.3e-33 144.1 71 88.7
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 1.6e-32 142.1 71 87.3
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 1.6e-32 142.1 71 87.3
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 1.6e-32 142.1 71 87.3
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 2.1e-32 141.7 71 87.3
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 2.1e-32 141.7 71 87.3
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 2.1e-32 141.7 71 87.3
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 2.1e-32 141.7 71 87.3
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 2.1e-32 141.7 71 87.3
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 2.1e-32 141.7 71 87.3
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 2.1e-32 141.7 71 87.3
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 2.8e-32 141.4 71 87.3
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 3.7e-32 141.0 71 85.9
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 3.7e-32 141.0 71 85.9
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 4.8e-32 140.6 71 87.3
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 4.8e-32 140.6 71 85.9
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 6.2e-32 140.2 71 85.9
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 6.2e-32 140.2 71 85.9
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 6.2e-32 140.2 71 85.9
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 6.2e-32 140.2 71 85.9
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 6.2e-32 140.2 71 85.9
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 6.2e-32 140.2 71 85.9
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 6.2e-32 140.2 71 85.9
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 8.1e-32 139.8 71 84.5
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 1.1e-31 139.4 71 84.5
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 1.4e-31 139.0 71 84.5
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 1.4e-31 139.0 71 84.5
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.8e-31 138.7 71 85.9
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 1.8e-31 138.7 71 85.9
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 1.8e-31 138.7 71 85.9
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 1.8e-31 138.7 71 84.5
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.8e-31 138.7 71 84.5
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.8e-31 138.7 71 84.5
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.8e-31 138.7 71 84.5
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 1.8e-31 138.7 71 84.5
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 2.4e-31 138.3 71 84.5
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 4.0e-31 137.5 71 84.5
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 4.0e-31 137.5 71 84.5
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 4.0e-31 137.5 71 84.5
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 4.0e-31 137.5 71 84.5
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 4.0e-31 137.5 71 84.5
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 5.3e-31 137.1 71 84.5
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 5.3e-31 137.1 71 83.1
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 5.3e-31 137.1 71 83.1
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 5.3e-31 137.1 71 84.5
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 5.3e-31 137.1 71 83.1
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 6.9e-31 136.7 71 84.5
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 6.9e-31 136.7 71 83.1
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 6.9e-31 136.7 71 83.1
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 6.9e-31 136.7 71 83.1
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 6.9e-31 136.7 71 83.1
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 9.0e-31 136.3 71 83.1
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 9.0e-31 136.3 71 83.1
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 9.0e-31 136.3 71 83.1
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 9.0e-31 136.3 71 83.1
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 9.0e-31 136.3 71 83.1
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 9.0e-31 136.3 71 83.1
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 1.2e-30 136.0 71 83.1
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 1.2e-30 136.0 71 83.1
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 1.2e-30 136.0 71 83.1
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 2.0e-30 135.2 71 83.1
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 2.0e-30 135.2 71 83.1
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 2.0e-30 135.2 71 83.1
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 2.0e-30 135.2 71 83.1
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 2.0e-30 135.2 71 83.1
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 2.0e-30 135.2 71 83.1
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 2.0e-30 135.2 71 81.7
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 2.6e-30 134.8 71 83.1
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 2.6e-30 134.8 71 81.7
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.6e-30 134.8 71 81.7
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.6e-30 134.8 71 81.7
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.6e-30 134.8 71 81.7
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 2.6e-30 134.8 71 81.7
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 2.6e-30 134.8 71 81.7
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.6e-30 134.8 71 81.7
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 3.4e-30 134.4 71 80.3
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 3.4e-30 134.4 71 81.7
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 3.4e-30 134.4 71 81.7
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 3.4e-30 134.4 71 81.7
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 3.4e-30 134.4 71 81.7
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 3.4e-30 134.4 71 81.7
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 3.4e-30 134.4 71 80.3
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 4.5e-30 134.0 71 81.7
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 4.5e-30 134.0 71 81.7
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 4.5e-30 134.0 71 81.7
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 5.8e-30 133.7 71 81.7
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 5.8e-30 133.7 71 81.7
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 5.8e-30 133.7 71 81.7
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 5.8e-30 133.7 71 81.7
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 5.8e-30 133.7 71 81.7
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 7.6e-30 133.3 71 81.7
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 7.6e-30 133.3 71 80.3
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 7.6e-30 133.3 71 80.3
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 7.6e-30 133.3 71 81.7
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 1.3e-29 132.5 71 81.7
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 1.3e-29 132.5 71 81.7
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 1.3e-29 132.5 71 81.7
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.3e-29 132.5 71 81.7
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 1.3e-29 132.5 71 81.7
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 1.3e-29 132.5 71 80.3
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.7e-29 132.1 69 79.7
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 2.2e-29 131.7 71 77.5
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.2e-29 131.7 71 81.7
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 2.2e-29 131.7 71 78.9
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 3.8e-29 131.0 71 80.3
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 3.8e-29 131.0 71 81.7
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 3.8e-29 131.0 71 81.7
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 3.8e-29 131.0 71 80.3
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 4.9e-29 130.6 71 78.9
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 6.5e-29 130.2 71 80.3
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 6.5e-29 130.2 71 80.3
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 6.5e-29 130.2 71 78.9
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 8.4e-29 129.8 71 80.3
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 8.4e-29 129.8 71 78.9
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 1.1e-28 129.4 98 64.3
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 1.1e-28 129.4 71 80.3
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 1.4e-28 129.0 71 81.7
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 1.4e-28 129.0 69 75.4
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 1.9e-28 128.6 71 76.1
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 1.9e-28 128.6 71 77.5
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 2.5e-28 128.3 71 78.9
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 2.5e-28 128.3 71 78.9
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 2.5e-28 128.3 71 78.9
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 2.5e-28 128.3 71 78.9
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 2.5e-28 128.3 71 78.9
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 7.1e-28 126.7 71 77.5
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 9.3e-28 126.3 71 76.1
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 1.2e-27 125.9 71 77.5
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 1.6e-27 125.6 70 77.1
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 2.7e-27 124.8 71 77.5
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.8e-26 122.1 71 73.2
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.8e-26 122.1 71 73.2
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 1.8e-26 122.1 71 76.1
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 2.3e-26 121.7 73 72.6
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 2.3e-26 121.7 73 72.6
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.1e-25 119.4 60 86.7
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 1.5e-25 119.0 71 71.8
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 4.3e-25 117.5 96 59.4
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 4.3e-25 117.5 74 71.6
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 1.6e-24 115.5 71 70.4
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 4.8e-24 114.0 71 66.2
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 4.8e-24 114.0 71 66.2
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 6.2e-24 113.6 69 72.5
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 2.4e-23 111.7 51 94.1
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 6.9e-23 110.2 71 69.0
Os07g0271600 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 2.6e-22 108.2 66 72.7
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 4.5e-22 107.5 51 90.2
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 4.5e-22 107.5 50 92.0
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 7.6e-22 106.7 53 86.8
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 3.8e-21 104.4 71 64.8
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 8.4e-21 103.2 91 54.9
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 1.9e-20 102.1 51 88.2
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 4.2e-20 100.9 45 95.6
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 7.1e-20 100.1 71 63.4
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 3.9e-18 94.4 71 60.6
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 8.7e-18 93.2 51 78.4
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 2.2e-16 88.6 77 57.1
FAN06G3710 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.4e-15 85.1 46 76.1
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 4.5e-14 80.9 70 50.0
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 2.1e-11 72.0 71 52.1


User provided reference genes

Program Settings