Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p40890 Brassica napus HOM05D002212 ORTHO05D002229 8.6e-111 403.7 204 100.0
BolC1t04044H Brassica oleracea HOM05D002212 ORTHO05D002229 1.7e-66 256.5 161 85.7
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 1.2e-19 100.9 108 51.9
BolC3t18099H Brassica oleracea HOM05D002212 ORTHO05D002229 7.7e-19 98.2 81 61.7
A06p33960 Brassica napus HOM05D002212 ORTHO05D002229 1.7e-18 97.1 81 60.5
BcaC01g02917 Brassica carinata HOM05D002212 ORTHO05D002229 2.9e-18 96.3 81 60.5
C03p58410 Brassica napus HOM05D002212 ORTHO05D002229 2.9e-18 96.3 81 60.5
BraA06t26329Z Brassica rapa HOM05D002212 ORTHO05D002229 5.0e-18 95.5 81 59.3
BcaB08g34734 Brassica carinata HOM05D002212 ORTHO05D002229 1.1e-17 94.4 81 56.8
BcaC04g22973 Brassica carinata HOM05D002212 ORTHO05D002229 4.2e-17 92.4 81 55.6
BolC9t54230H Brassica oleracea HOM05D002212 ORTHO05D002229 4.2e-17 92.4 81 55.6
C09p13390 Brassica napus HOM05D002212 ORTHO05D002229 7.2e-17 91.7 81 55.6
Thhalv10022639m.g Eutrema salsugineum HOM05D002212 ORTHO05D002229 6.1e-16 88.6 81 53.1
Sp3g30780 Schrenkiella parvula HOM05D002212 ORTHO05D002229 1.0e-15 87.8 81 54.3
BcaB07g31729 Brassica carinata HOM05D002212 ORTHO05D002229 2.3e-15 86.7 83 54.2
BraA09t36776Z Brassica rapa HOM05D002212 ORTHO05D002229 2.3e-15 86.7 76 56.6
Thhalv10024838m.g Eutrema salsugineum HOM05D002212 ORTHO05D002229 6.7e-15 85.1 81 51.9
CARHR107610 Cardamine hirsuta HOM05D002212 ORTHO05D002229 8.8e-15 84.7 133 42.1
A09p11370 Brassica napus HOM05D002212 ORTHO05D002229 2.0e-14 83.6 76 55.3
AL3G50310 Arabidopsis lyrata HOM05D002212 ORTHO05D002229 9.7e-14 81.3 83 49.4
AL7G15700 Arabidopsis lyrata HOM05D002212 ORTHO05D002229 3.7e-13 79.3 81 49.4
AT2G17440 Arabidopsis thaliana HOM05D002212 ORTHO05D002229 1.8e-12 77.0 83 49.4
Sp7g33240 Schrenkiella parvula HOM05D002212 ORTHO05D002229 3.1e-12 76.3 81 46.9
Aa31LG6G12440 Aethionema arabicum HOM05D002212 ORTHO05D002229 4.1e-12 75.9 81 45.7
AT4G35470 Arabidopsis thaliana HOM05D002212 ORTHO05D002229 4.1e-12 75.9 89 46.1
Manes.02G116100 Manihot esculenta HOM05D002212 ORTHO05D002229 4.1e-12 75.9 81 45.7
Carub.0003s3148 Capsella rubella HOM05D002212 ORTHO05D002229 5.3e-12 75.5 84 46.4
Carub.0007s0486 Capsella rubella HOM05D002212 ORTHO05D002229 5.3e-12 75.5 81 45.7
Haze_03639 Corylus avellana HOM05D002212 ORTHO05D002229 9.1e-12 74.7 89 43.8
Aa31LG8G14750 Aethionema arabicum HOM05D002212 ORTHO05D002229 1.6e-11 73.9 81 43.2
Lj2C504T11 Lonicera japonica HOM05D002212 ORTHO05D002229 2.0e-11 73.6 89 43.8
Dinv28298 Davidia involucrata HOM05D002212 ORTHO05D002229 2.7e-11 73.2 81 45.7
QL06p053326 Quercus lobata HOM05D002212 ORTHO05D002229 2.7e-11 73.2 82 43.9
BcaC05g27361 Brassica carinata HOM05D002212 ORTHO05D002229 4.5e-11 72.4 110 44.5
Cfa007109 Carpinus fangiana HOM05D002212 ORTHO05D002229 4.5e-11 72.4 81 44.4
PSO541G2167 Papaver somniferum HOM05D002212 ORTHO05D002229 5.9e-11 72.0 89 42.7
PSO675G3911 Papaver somniferum HOM05D002212 ORTHO05D002229 5.9e-11 72.0 89 41.6
BcaNung03630 Brassica carinata HOM05D002212 ORTHO05D002229 7.7e-11 71.6 81 45.7
Nn6g31649 Nelumbo nucifera HOM05D002212 ORTHO05D002229 7.7e-11 71.6 81 44.4
THA.LOC104819706 Tarenaya hassleriana HOM05D002212 ORTHO05D002229 7.7e-11 71.6 81 48.1
TAR625G1428 Trochodendron aralioides HOM05D002212 ORTHO05D002229 7.7e-11 71.6 153 30.7
Gohir.A07G172000 Gossypium hirsutum HOM05D002212 ORTHO05D002229 1.0e-10 71.2 76 47.4
Gohir.D07G178900 Gossypium hirsutum HOM05D002212 ORTHO05D002229 1.0e-10 71.2 76 47.4
Gorai.001G200100 Gossypium raimondii HOM05D002212 ORTHO05D002229 1.0e-10 71.2 76 47.4
SalBow3G1404 Salvia bowleyana HOM05D002212 ORTHO05D002229 1.0e-10 71.2 89 39.3
SalBow3G2770 Salvia bowleyana HOM05D002212 ORTHO05D002229 1.0e-10 71.2 89 39.3
Thecc.01G002300 Theobroma cacao HOM05D002212 ORTHO05D002229 1.0e-10 71.2 92 44.6
Eucgr.I02205 Eucalyptus grandis HOM05D002212 ORTHO05D002229 1.3e-10 70.9 81 43.2
Glyma.16G112600 Glycine max HOM05D002212 ORTHO05D002229 1.3e-10 70.9 91 44.0
Hma1.2p1_0631F.1_g192310 Hydrangea macrophylla HOM05D002212 ORTHO05D002229 1.3e-10 70.9 86 44.2
Phvul.002G118400 Phaseolus vulgaris HOM05D002212 ORTHO05D002229 1.3e-10 70.9 81 43.2
A03p63580 Brassica napus HOM05D002212 ORTHO05D002229 1.7e-10 70.5 81 44.4
C01p03470 Brassica napus HOM05D002212 ORTHO05D002229 1.7e-10 70.5 81 43.2
BolC1t00334H Brassica oleracea HOM05D002212 ORTHO05D002229 1.7e-10 70.5 81 43.2
BraA03t15428Z Brassica rapa HOM05D002212 ORTHO05D002229 1.7e-10 70.5 81 44.4
Dinv40213 Davidia involucrata HOM05D002212 ORTHO05D002229 2.2e-10 70.1 108 37.0
Glyma.09G196300 Glycine max HOM05D002212 ORTHO05D002229 2.2e-10 70.1 100 42.0
VMungo1215G0534 Vigna mungo HOM05D002212 ORTHO05D002229 2.2e-10 70.1 81 43.2
Cc07_g12150 Coffea canephora HOM05D002212 ORTHO05D002229 2.9e-10 69.7 81 39.5
Prupe.7G186300 Prunus persica HOM05D002212 ORTHO05D002229 2.9e-10 69.7 89 44.9
arahy.Tifrunner.gnm1.ann1.N938ZP Arachis hypogaea HOM05D002212 ORTHO05D002229 3.8e-10 69.3 81 43.2
arahy.Tifrunner.gnm1.ann1.SZ6KWI Arachis hypogaea HOM05D002212 ORTHO05D002229 3.8e-10 69.3 81 43.2
CSS0027494 Camellia sinensis var. sinensis HOM05D002212 ORTHO05D002229 3.8e-10 69.3 89 41.6
Lalb_Chr09g0324841 Lupinus albus HOM05D002212 ORTHO05D002229 3.8e-10 69.3 89 40.4
Manes.01G157200 Manihot esculenta HOM05D002212 ORTHO05D002229 3.8e-10 69.3 86 38.4
Solyc02g038800.1 Solanum lycopersicum HOM05D002212 ORTHO05D002229 3.8e-10 69.3 81 43.2
Sopen02g012410 Solanum pennellii HOM05D002212 ORTHO05D002229 3.8e-10 69.3 81 42.0
Migut.H02214 Erythranthe guttata HOM05D002212 ORTHO05D002229 6.5e-10 68.6 81 40.7
HanXRQChr09g0259051 Helianthus annuus HOM05D002212 ORTHO05D002229 6.5e-10 68.6 64 51.6
Lalb_Chr16g0391701 Lupinus albus HOM05D002212 ORTHO05D002229 6.5e-10 68.6 81 42.0
Nn5g31041 Nelumbo nucifera HOM05D002212 ORTHO05D002229 6.5e-10 68.6 81 43.2
Nitab4.5_0000855g0060 Nicotiana tabacum HOM05D002212 ORTHO05D002229 6.5e-10 68.6 64 51.6
Nitab4.5_0003096g0030 Nicotiana tabacum HOM05D002212 ORTHO05D002229 6.5e-10 68.6 64 51.6
Ah.02g123150 Amaranthus hybridus HOM05D002212 ORTHO05D002229 8.5e-10 68.2 81 42.0
Ciclev10025268m.g Citrus clementina HOM05D002212 ORTHO05D002229 8.5e-10 68.2 86 39.5
PGSC0003DMG400023198 Solanum tuberosum HOM05D002212 ORTHO05D002229 8.5e-10 68.2 81 40.7
TAR381G1220 Trochodendron aralioides HOM05D002212 ORTHO05D002229 8.5e-10 68.2 76 44.7
Atru.chr3.53 Acer truncatum HOM05D002212 ORTHO05D002229 1.1e-09 67.8 108 37.0
CiPaw.07G000600 Carya illinoinensis HOM05D002212 ORTHO05D002229 1.1e-09 67.8 86 41.9
Ca_24996_v3 Cicer arietinum L. HOM05D002212 ORTHO05D002229 1.1e-09 67.8 172 27.3
MD02G1109000 Malus domestica HOM05D002212 ORTHO05D002229 1.1e-09 67.8 81 46.9
Sed0021196 Sechium edule HOM05D002212 ORTHO05D002229 1.1e-09 67.8 166 31.3
BcaNung02393 Brassica carinata HOM05D002212 ORTHO05D002229 1.5e-09 67.4 81 43.2
C07p61160 Brassica napus HOM05D002212 ORTHO05D002229 1.5e-09 67.4 81 43.2
Nitab4.5_0000467g0120 Nicotiana tabacum HOM05D002212 ORTHO05D002229 1.5e-09 67.4 81 39.5
Oeu045750.2 Olea europaea HOM05D002212 ORTHO05D002229 1.5e-09 67.4 89 39.3
Ah.03g142970 Amaranthus hybridus HOM05D002212 ORTHO05D002229 1.9e-09 67.0 146 32.2
AUR62016576 Chenopodium quinoa HOM05D002212 ORTHO05D002229 1.9e-09 67.0 81 39.5
DCAR_016692 Daucus carota HOM05D002212 ORTHO05D002229 1.9e-09 67.0 86 38.4
Duzib147G0477 Durio zibethinus HOM05D002212 ORTHO05D002229 1.9e-09 67.0 81 43.2
Glyma.01G157000 Glycine max HOM05D002212 ORTHO05D002229 1.9e-09 67.0 89 40.4
Medtr5g024780 Medicago truncatula HOM05D002212 ORTHO05D002229 1.9e-09 67.0 81 42.0
HPP92_022741 Vanilla planifolia HOM05D002212 ORTHO05D002229 1.9e-09 67.0 141 28.4
AUR62003723 Chenopodium quinoa HOM05D002212 ORTHO05D002229 2.5e-09 66.6 81 39.5
PGR119G1495 Punica granatum HOM05D002212 ORTHO05D002229 2.5e-09 66.6 81 40.7
Rhsim10G0191600 Rhododendron simsii HOM05D002212 ORTHO05D002229 2.5e-09 66.6 81 42.0
A01p03120 Brassica napus HOM05D002212 ORTHO05D002229 3.2e-09 66.2 81 40.7
BraA01t00296Z Brassica rapa HOM05D002212 ORTHO05D002229 3.2e-09 66.2 81 40.7
CDE10G1347 Ceratophyllum demersum HOM05D002212 ORTHO05D002229 3.2e-09 66.2 89 38.2
EL10Ac6g15031 Beta vulgaris HOM05D002212 ORTHO05D002229 4.2e-09 65.9 82 39.0
CiPaw.08G182500 Carya illinoinensis HOM05D002212 ORTHO05D002229 4.2e-09 65.9 81 42.0
Nitab4.5_0005203g0010 Nicotiana tabacum HOM05D002212 ORTHO05D002229 4.2e-09 65.9 81 38.3
Oeu043404.1 Olea europaea HOM05D002212 ORTHO05D002229 4.2e-09 65.9 81 39.5
Hund19686 Selenicereus undatus HOM05D002212 ORTHO05D002229 4.2e-09 65.9 81 40.7
BolC7t46540H Brassica oleracea HOM05D002212 ORTHO05D002229 5.5e-09 65.5 81 42.0
CAN.G328.2 Capsicum annuum HOM05D002212 ORTHO05D002229 5.5e-09 65.5 81 40.7
FvH4_1g10070 Fragaria vesca HOM05D002212 ORTHO05D002229 5.5e-09 65.5 81 43.2
FAN19G0792 Fragaria x ananassa HOM05D002212 ORTHO05D002229 5.5e-09 65.5 81 43.2
FAN23G1053 Fragaria x ananassa HOM05D002212 ORTHO05D002229 5.5e-09 65.5 81 43.2
FAN26G0901 Fragaria x ananassa HOM05D002212 ORTHO05D002229 5.5e-09 65.5 81 43.2
FAN28G2035 Fragaria x ananassa HOM05D002212 ORTHO05D002229 5.5e-09 65.5 81 43.2
Lj2g0008426 Lotus japonicus HOM05D002212 ORTHO05D002229 5.5e-09 65.5 81 39.5
MD15G1228200 Malus domestica HOM05D002212 ORTHO05D002229 5.5e-09 65.5 64 54.7
Hund03586 Selenicereus undatus HOM05D002212 ORTHO05D002229 5.5e-09 65.5 81 44.4
DCAR_002995 Daucus carota HOM05D002212 ORTHO05D002229 7.2e-09 65.1 89 39.3
Lalb_Chr16g0380181 Lupinus albus HOM05D002212 ORTHO05D002229 7.2e-09 65.1 89 38.2
vmacro20609 Vaccinium macrocarpon HOM05D002212 ORTHO05D002229 7.2e-09 65.1 86 40.7
MSTRG.15605 Avicennia marina HOM05D002212 ORTHO05D002229 9.4e-09 64.7 76 39.5
CAN.G1428.4 Capsicum annuum HOM05D002212 ORTHO05D002229 9.4e-09 64.7 64 46.9
Lsat_1_v5_gn_3_68961 Lactuca sativa HOM05D002212 ORTHO05D002229 9.4e-09 64.7 63 46.0
RcHm_v2.0_Chr2g0096861 Rosa chinensis HOM05D002212 ORTHO05D002229 9.4e-09 64.7 81 40.7
unitig_899.g14729 Utricularia gibba HOM05D002212 ORTHO05D002229 9.4e-09 64.7 105 37.1
ClCG01G020970 Citrullus lanatus HOM05D002212 ORTHO05D002229 1.2e-08 64.3 64 43.8
MELO3C007981.2 Cucumis melo HOM05D002212 ORTHO05D002229 1.2e-08 64.3 64 43.8
FAN23G2302 Fragaria x ananassa HOM05D002212 ORTHO05D002229 1.6e-08 63.9 170 30.6
Lalb_Chr05g0214951 Lupinus albus HOM05D002212 ORTHO05D002229 1.6e-08 63.9 89 38.2
Hma1.2p1_0085F.1_g044420 Hydrangea macrophylla HOM05D002212 ORTHO05D002229 2.1e-08 63.5 81 40.7
Potri.005G098600 Populus trichocarpa HOM05D002212 ORTHO05D002229 2.1e-08 63.5 81 38.3
Potri.007G065000 Populus trichocarpa HOM05D002212 ORTHO05D002229 2.1e-08 63.5 81 38.3
SalBow5G4614 Salvia bowleyana HOM05D002212 ORTHO05D002229 2.1e-08 63.5 89 37.1
GSVIVG01022315001 Vitis vinifera HOM05D002212 ORTHO05D002229 2.1e-08 63.5 81 38.3
Glyma.11G087900 Glycine max HOM05D002212 ORTHO05D002229 3.6e-08 62.8 89 39.3
Lsat_1_v5_gn_8_113121 Lactuca sativa HOM05D002212 ORTHO05D002229 3.6e-08 62.8 65 44.6
Sabra05G0081000 Salix brachista HOM05D002212 ORTHO05D002229 3.6e-08 62.8 81 37.0
ATR0605G056 Amborella trichopoda HOM05D002212 ORTHO05D002229 4.7e-08 62.4 81 38.3
HanXRQChr16g0532131 Helianthus annuus HOM05D002212 ORTHO05D002229 4.7e-08 62.4 64 45.3
Lsat_1_v5_gn_2_73601 Lactuca sativa HOM05D002212 ORTHO05D002229 4.7e-08 62.4 62 48.4
HPP92_019671 Vanilla planifolia HOM05D002212 ORTHO05D002229 4.7e-08 62.4 63 46.0
CsaV3_6G047920 Cucumis sativus L. HOM05D002212 ORTHO05D002229 6.1e-08 62.0 64 42.2
HanXRQChr14g0443021 Helianthus annuus HOM05D002212 ORTHO05D002229 8.0e-08 61.6 63 46.0
TPR.G33791 Trifolium pratense HOM05D002212 ORTHO05D002229 8.0e-08 61.6 171 29.2
DCAR_014300 Daucus carota HOM05D002212 ORTHO05D002229 1.8e-07 60.5 81 37.0
ECA246G5333 Erigeron canadensis HOM05D002212 ORTHO05D002229 1.8e-07 60.5 63 42.9
MBI01_g01375_MAGBIO Magnolia biondii HOM05D002212 ORTHO05D002229 1.8e-07 60.5 100 30.0
Psat2g147600 Pisum sativum HOM05D002212 ORTHO05D002229 1.8e-07 60.5 167 26.3
Aqoxy6G01546 Aquilegia oxysepala HOM05D002212 ORTHO05D002229 2.3e-07 60.1 86 36.0
PGSC0003DMG400013644 Solanum tuberosum HOM05D002212 ORTHO05D002229 2.3e-07 60.1 64 43.8
MBI04_g33968_MAGBIO Magnolia biondii HOM05D002212 ORTHO05D002229 3.0e-07 59.7 64 42.2
Os08g0511700 Oryza sativa ssp. japonica HOM05D002212 ORTHO05D002229 3.0e-07 59.7 81 40.7
Solyc02g082350.3 Solanum lycopersicum HOM05D002212 ORTHO05D002229 5.2e-07 58.9 111 33.3
Sopen02g027010 Solanum pennellii HOM05D002212 ORTHO05D002229 5.2e-07 58.9 111 33.3
ECA238G0925 Erigeron canadensis HOM05D002212 ORTHO05D002229 3.4e-06 56.2 127 32.3
Medtr8g072950 Medicago truncatula HOM05D002212 ORTHO05D002229 4.4e-06 55.8 55 43.6
TPR.G36532 Trifolium pratense HOM05D002212 ORTHO05D002229 5.7e-06 55.5 53 45.3
Zm00001eb035230 Zea mays HOM05D002212 ORTHO05D002229 9.8e-06 54.7 81 39.5


User provided reference genes

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