Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p40680 Brassica napus HOM05D002378 ORTHO05D021942 2.8e-68 261.9 142 100.0
C03p09800 Brassica napus HOM05D002378 ORTHO05D021942 2.1e-60 235.7 144 91.7
A08p04270 Brassica napus HOM05D002378 ORTHO05D002936 2.6e-58 228.8 132 91.7
BraA08t32454Z Brassica rapa HOM05D002378 ORTHO05D002936 2.6e-58 228.8 132 91.7
BcaC07g37090 Brassica carinata HOM05D002378 ORTHO05D002936 7.6e-58 227.3 132 90.9
C08p04540 Brassica napus HOM05D002378 ORTHO05D002936 7.6e-58 227.3 132 90.9
BolC8t47258H Brassica oleracea HOM05D002378 ORTHO05D002936 7.6e-58 227.3 132 90.9
BcaB04g17375 Brassica carinata HOM05D002378 ORTHO05D002936 3.3e-53 211.8 129 86.8
Sp1g35880 Schrenkiella parvula HOM05D002378 ORTHO05D002936 1.1e-48 196.8 128 82.0
Thhalv10011298m.g Eutrema salsugineum HOM05D002378 ORTHO05D002936 1.6e-47 193.0 130 80.8
CARHR038980 Cardamine hirsuta HOM05D002378 ORTHO05D002936 5.9e-42 174.5 131 74.8
AL1G55800 Arabidopsis lyrata HOM05D002378 ORTHO05D002936 2.2e-41 172.6 134 74.6
Carub.0001s3814 Capsella rubella HOM05D002378 ORTHO05D002936 8.5e-41 170.6 132 79.5
AT1G48970 Arabidopsis thaliana HOM05D002378 ORTHO05D002936 4.2e-40 168.3 133 77.4
BcaC09g49272 Brassica carinata HOM05D002378 ORTHO05D021942 1.7e-36 156.4 79 100.0
BolC4t24766H Brassica oleracea HOM05D002378 ORTHO05D021942 6.1e-31 137.9 96 80.2
Aa31LG10G4960 Aethionema arabicum HOM05D002378 ORTHO05D002936 2.0e-29 132.9 133 62.4
Manes.05G118200 Manihot esculenta HOM05D002378 ORTHO05D002936 2.0e-21 106.3 129 54.3
BolC3t13469H Brassica oleracea HOM05D002378 ORTHO05D021942 1.8e-19 99.8 52 94.2
Cpa.g.sc13.58 Carica papaya HOM05D002378 ORTHO05D002936 1.6e-18 96.7 133 49.6
Sabra12G0040600 Salix brachista HOM05D002378 ORTHO05D002936 2.0e-18 96.3 135 46.7
RcHm_v2.0_Chr7g0184441 Rosa chinensis HOM05D002378 ORTHO05D002936 2.7e-18 95.9 121 50.4
Potri.012G059300 Populus trichocarpa HOM05D002378 ORTHO05D002936 2.3e-17 92.8 135 44.4
Atru.chr9.739 Acer truncatum HOM05D002378 ORTHO05D002936 5.0e-17 91.7 133 51.1
Duzib068G0447 Durio zibethinus HOM05D002378 ORTHO05D002936 1.9e-16 89.7 131 49.6
Aqoxy3G03892 Aquilegia oxysepala HOM05D002378 ORTHO05D002936 3.3e-16 89.0 130 46.9
MD14G1221000 Malus domestica HOM05D002378 ORTHO05D002936 3.3e-16 89.0 123 48.8
Eucgr.B00690 Eucalyptus grandis HOM05D002378 ORTHO05D002936 2.8e-15 85.9 140 49.3
Duzib084G0818 Durio zibethinus HOM05D002378 ORTHO05D002936 6.1e-15 84.7 136 47.1
FvH4_5g12800 Fragaria vesca HOM05D002378 ORTHO05D002936 6.1e-15 84.7 121 47.9
FAN18G2406 Fragaria x ananassa HOM05D002378 ORTHO05D002936 6.1e-15 84.7 121 47.9
Rhsim12G0144900 Rhododendron simsii HOM05D002378 ORTHO05D002936 6.1e-15 84.7 129 48.8
FAN18G2445 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.0e-14 84.0 121 47.9
Hma1.2p1_0340F.1_g129970 Hydrangea macrophylla HOM05D002378 ORTHO05D002936 1.4e-14 83.6 126 46.8
Dinv38595 Davidia involucrata HOM05D002378 ORTHO05D002936 3.0e-14 82.4 137 49.6
ClCG06G015090 Citrullus lanatus HOM05D002378 ORTHO05D002936 6.8e-14 81.3 132 47.0
MELO3C017280.2 Cucumis melo HOM05D002378 ORTHO05D002936 6.8e-14 81.3 132 47.7
CsaV3_1G003550 Cucumis sativus L. HOM05D002378 ORTHO05D002936 8.9e-14 80.9 130 47.7
FAN08G3159 Fragaria x ananassa HOM05D002378 ORTHO05D002936 8.9e-14 80.9 121 45.5
MD06G1210100 Malus domestica HOM05D002378 ORTHO05D002936 3.4e-13 79.0 123 47.2
Thecc.03G027400 Theobroma cacao HOM05D002378 ORTHO05D002936 3.4e-13 79.0 131 46.6
TWI15G1079 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 5.7e-13 78.2 130 46.2
MELO3C017281.2 Cucumis melo HOM05D002378 ORTHO05D002936 9.8e-13 77.4 136 45.6
CsaV3_1G003560 Cucumis sativus L. HOM05D002378 ORTHO05D002936 9.8e-13 77.4 136 45.6
ClCG06G015080 Citrullus lanatus HOM05D002378 ORTHO05D002936 1.7e-12 76.6 136 44.1
Ciclev10019126m.g Citrus clementina HOM05D002378 ORTHO05D002936 1.7e-12 76.6 128 43.0
Actinidia35073 Actinidia chinensis HOM05D002378 ORTHO05D002936 2.2e-12 76.3 137 44.5
Nn4g23696 Nelumbo nucifera HOM05D002378 ORTHO05D002936 4.9e-12 75.1 130 46.2
Lj5A141T92 Lonicera japonica HOM05D002378 ORTHO05D002936 8.3e-12 74.3 134 47.0
TWI81G0305 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 8.3e-12 74.3 134 43.3
Sed0001506 Sechium edule HOM05D002378 ORTHO05D002936 1.1e-11 73.9 147 44.2
CANSAT80G1104 Cannabis sativa HOM05D002378 ORTHO05D002936 1.8e-11 73.2 124 48.4
Prupe.5G216300 Prunus persica HOM05D002378 ORTHO05D002936 2.4e-11 72.8 111 47.7
PGR083G2054 Punica granatum HOM05D002378 ORTHO05D002936 3.1e-11 72.4 140 40.7
Lalb_Chr08g0235111 Lupinus albus HOM05D002378 ORTHO05D002936 5.4e-11 71.6 128 39.1
CSS0029737 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 9.2e-11 70.9 133 41.4
Lj9A432T68 Lonicera japonica HOM05D002378 ORTHO05D002936 9.2e-11 70.9 124 44.4
Gohir.A09G044900 Gossypium hirsutum HOM05D002378 ORTHO05D002936 2.0e-10 69.7 131 44.3
TAR629G0462 Trochodendron aralioides HOM05D002378 ORTHO05D002936 2.0e-10 69.7 129 45.7
MBI16_g23769_MAGBIO Magnolia biondii HOM05D002378 ORTHO05D002936 2.7e-10 69.3 124 46.8
AUR62008960 Chenopodium quinoa HOM05D002378 ORTHO05D002936 4.5e-10 68.6 135 43.7
DCAR_011340 Daucus carota HOM05D002378 ORTHO05D002936 4.5e-10 68.6 133 44.4
Gohir.D09G046600 Gossypium hirsutum HOM05D002378 ORTHO05D002936 4.5e-10 68.6 131 42.7
Gorai.006G063500 Gossypium raimondii HOM05D002378 ORTHO05D002936 4.5e-10 68.6 131 41.2
Psat1g025720 Pisum sativum HOM05D002378 ORTHO05D002936 7.8e-10 67.8 126 42.9
Hund16116 Selenicereus undatus HOM05D002378 ORTHO05D002936 7.8e-10 67.8 133 44.4
TAR371G0108 Trochodendron aralioides HOM05D002378 ORTHO05D002936 7.8e-10 67.8 130 43.1
COL.COLO4_22702 Corchorus olitorius HOM05D002378 ORTHO05D002936 1.0e-09 67.4 131 42.7
MSTRG.23823 Avicennia marina HOM05D002378 ORTHO05D002936 1.3e-09 67.0 136 42.6
PSO478G4524 Papaver somniferum HOM05D002378 ORTHO05D002936 1.3e-09 67.0 134 41.0
AUR62014543 Chenopodium quinoa HOM05D002378 ORTHO05D002936 1.7e-09 66.6 117 46.2
Nn3g17690 Nelumbo nucifera HOM05D002378 ORTHO05D002936 1.7e-09 66.6 132 41.7
SalBow1G2456 Salvia bowleyana HOM05D002378 ORTHO05D002936 1.7e-09 66.6 130 41.5
CSS0027164 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 2.3e-09 66.2 133 43.6
HanXRQChr05g0157741 Helianthus annuus HOM05D002378 ORTHO05D002936 2.3e-09 66.2 138 42.8
CSS0031813 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 2.9e-09 65.9 130 43.8
PSO017G6834 Papaver somniferum HOM05D002378 ORTHO05D002936 2.9e-09 65.9 133 45.9
TWI77G0650 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 3.8e-09 65.5 138 41.3
Haze_18594 Corylus avellana HOM05D002378 ORTHO05D002936 6.6e-09 64.7 139 41.7
Migut.K00860 Erythranthe guttata HOM05D002378 ORTHO05D002936 6.6e-09 64.7 130 43.8
Cc07_g05060 Coffea canephora HOM05D002378 ORTHO05D002936 8.6e-09 64.3 136 43.4
Lsat_1_v5_gn_5_24260 Lactuca sativa HOM05D002378 ORTHO05D002936 8.6e-09 64.3 139 43.2
MD17G1073400 Malus domestica HOM05D002378 ORTHO05D002936 8.6e-09 64.3 123 39.8
Cfa007954 Carpinus fangiana HOM05D002378 ORTHO05D002936 1.1e-08 63.9 135 42.2
HPP92_014008 Vanilla planifolia HOM05D002378 ORTHO05D002936 1.5e-08 63.5 132 43.2
HPP92_026838 Vanilla planifolia HOM05D002378 ORTHO05D002936 1.5e-08 63.5 132 43.2
GSVIVG01008226001 Vitis vinifera HOM05D002378 ORTHO05D002936 1.5e-08 63.5 132 42.4
Medtr2g055750 Medicago truncatula HOM05D002378 ORTHO05D002936 1.9e-08 63.2 135 39.3
EL10Ac2g04613 Beta vulgaris HOM05D002378 ORTHO05D002936 3.3e-08 62.4 135 39.3
Lsat_1_v5_gn_8_115661 Lactuca sativa HOM05D002378 ORTHO05D002936 4.3e-08 62.0 111 45.0
Cfa019834 Carpinus fangiana HOM05D002378 ORTHO05D002936 5.6e-08 61.6 139 44.6
CiPaw.16G083400 Carya illinoinensis HOM05D002378 ORTHO05D002936 5.6e-08 61.6 122 44.3
Haze_14115 Corylus avellana HOM05D002378 ORTHO05D002936 5.6e-08 61.6 123 43.1
Haze_14121 Corylus avellana HOM05D002378 ORTHO05D002936 5.6e-08 61.6 123 43.1
SEGI_31897 Sequoiadendron giganteum HOM05D002378 ORTHO05D023460 5.6e-08 61.6 121 39.7
TAR371G0705 Trochodendron aralioides HOM05D002378 ORTHO05D023460 7.3e-08 61.2 130 40.8
QL10p023133 Quercus lobata HOM05D002378 ORTHO05D002936 9.5e-08 60.8 138 39.9
CDE02G2012 Ceratophyllum demersum HOM05D002378 ORTHO05D002936 1.2e-07 60.5 132 35.6
Dinv34855 Davidia involucrata HOM05D002378 ORTHO05D002936 1.2e-07 60.5 130 43.1
CiPaw.15G125400 Carya illinoinensis HOM05D002378 ORTHO05D002936 1.6e-07 60.1 127 41.7
PGR004G1585 Punica granatum HOM05D002378 ORTHO05D002936 1.6e-07 60.1 74 50.0
ECA246G5105 Erigeron canadensis HOM05D002378 ORTHO05D002936 2.1e-07 59.7 137 42.3
Thecc.04G139000 Theobroma cacao HOM05D002378 ORTHO05D002936 2.1e-07 59.7 130 40.0
Migut.H00530 Erythranthe guttata HOM05D002378 ORTHO05D002936 3.6e-07 58.9 133 41.4
Nitab4.5_0009272g0020 Nicotiana tabacum HOM05D002378 ORTHO05D002936 4.7e-07 58.5 130 40.0
Eucgr.I02131 Eucalyptus grandis HOM05D002378 ORTHO05D002936 6.1e-07 58.2 94 43.6
ATR0053G021 Amborella trichopoda HOM05D002378 ORTHO05D002936 8.0e-07 57.8 117 40.2
TWI74G0601 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 8.0e-07 57.8 134 36.6
Ah.10g037500 Amaranthus hybridus HOM05D002378 ORTHO05D002936 1.0e-06 57.4 136 39.7
Nitab4.5_0000208g0140 Nicotiana tabacum HOM05D002378 ORTHO05D002936 1.0e-06 57.4 133 38.3
Gohir.D08G047300 Gossypium hirsutum HOM05D002378 ORTHO05D002936 1.4e-06 57.0 130 36.2
Nitab4.5_0006132g0040 Nicotiana tabacum HOM05D002378 ORTHO05D002936 1.8e-06 56.6 133 39.1
MSTRG.15418 Avicennia marina HOM05D002378 ORTHO05D002936 2.3e-06 56.2 115 40.0
Cc04_g07600 Coffea canephora HOM05D002378 ORTHO05D002936 2.3e-06 56.2 131 41.2
arahy.Tifrunner.gnm1.ann1.AT7X8X Arachis hypogaea HOM05D002378 ORTHO05D002936 3.0e-06 55.8 77 51.9
arahy.Tifrunner.gnm1.ann1.X6Y4TE Arachis hypogaea HOM05D002378 ORTHO05D002936 3.0e-06 55.8 77 51.9
PGSC0003DMG400023069 Solanum tuberosum HOM05D002378 ORTHO05D002936 3.0e-06 55.8 133 38.3
CiPaw.03G058900 Carya illinoinensis HOM05D002378 ORTHO05D002936 4.0e-06 55.5 85 50.6
CDE01G0476 Ceratophyllum demersum HOM05D002378 ORTHO05D002936 5.2e-06 55.1 132 34.8
Dinv06179 Davidia involucrata HOM05D002378 ORTHO05D025263 5.2e-06 55.1 126 38.1
Thhalv10027687m.g Eutrema salsugineum HOM05D002378 ORTHO05D002936 5.2e-06 55.1 81 48.1
unitig_62.g23398 Utricularia gibba HOM05D002378 ORTHO05D002936 5.2e-06 55.1 108 41.7
Oeu033431.1 Olea europaea HOM05D002378 ORTHO05D002936 6.8e-06 54.7 121 37.2
Psat1g060960 Pisum sativum HOM05D002378 ORTHO05D021942 8.9e-06 54.3 78 47.4


User provided reference genes

Program Settings