Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p39870 Brassica napus HOM05D017719 ORTHO05D019411 1.2e-59 233.0 119 100.0
BolC1t03938H Brassica oleracea HOM05D017719 ORTHO05D019411 4.9e-58 227.6 119 97.5
C06p16660 Brassica napus HOM05D017719 ORTHO05D019411 3.3e-30 135.2 138 60.1
BolC6t36867H Brassica oleracea HOM05D017719 ORTHO05D019411 3.3e-30 135.2 138 60.1
Thhalv10015438m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 1.3e-18 96.7 143 44.1
BraA05t20593Z Brassica rapa HOM05D017719 ORTHO05D019411 5.0e-18 94.7 51 84.3
BraA07t27801Z Brassica rapa HOM05D000023 ORTHO05D000014 3.4e-11 72.0 192 34.9
A07p10130 Brassica napus HOM05D000023 ORTHO05D000014 7.7e-11 70.9 192 34.9
BraA07t28806Z Brassica rapa HOM05D000023 ORTHO05D000014 7.7e-11 70.9 192 34.9
Rhsim05G0091000 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.0e-10 70.5 116 37.1
C03p46020 Brassica napus HOM05D000023 ORTHO05D016127 8.5e-10 67.4 193 34.2
BolC3t16874H Brassica oleracea HOM05D000023 ORTHO05D016127 8.5e-10 67.4 193 34.2
Thhalv10012177m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 1.1e-09 67.0 116 34.5
Rhsim01G0206800 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.9e-09 66.2 116 35.3
BraA03t15322Z Brassica rapa HOM05D000023 ORTHO05D000014 3.2e-09 65.5 89 40.4
Hma1.2p1_2002F.1_g310750 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 4.2e-09 65.1 115 36.5
RcHm_v2.0_Chr1g0314451 Rosa chinensis HOM05D000023 ORTHO05D000014 4.2e-09 65.1 115 35.7
Oeu004452.1 Olea europaea HOM05D000023 ORTHO05D000014 5.5e-09 64.7 87 44.8
Hma1.2p1_0238F.1_g099760 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 7.2e-09 64.3 115 36.5
Rhsim03G0092200 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.1e-08 62.8 116 33.6
Rhsim09G0063600 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.1e-08 62.8 116 33.6
Rhsim13G0106300 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.1e-08 62.8 116 33.6
Oeu004450.1 Olea europaea HOM05D000023 ORTHO05D000014 2.7e-08 62.4 87 43.7
CARHR029720 Cardamine hirsuta HOM05D000023 ORTHO05D000014 4.7e-08 61.6 115 31.3
C01p38810 Brassica napus HOM05D000023 ORTHO05D014533 7.9e-08 60.8 83 39.8
Hma1.2p1_0118F.1_g056490 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 7.9e-08 60.8 115 34.8
Hma1.2p1_0160F.1_g070850 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 7.9e-08 60.8 115 33.9
TWI75G1282 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.4e-07 60.1 119 35.3
RcHm_v2.0_Chr6g0251571 Rosa chinensis HOM05D000023 ORTHO05D000014 2.3e-07 59.3 114 34.2
Glyma.15G205800 Glycine max HOM05D000023 ORTHO05D000014 3.0e-07 58.9 83 39.8
Atru.chr4.1182 Acer truncatum HOM05D000023 ORTHO05D000014 3.9e-07 58.5 131 29.8
Thhalv10022981m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 3.9e-07 58.5 74 39.2
Thhalv10026863m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 5.1e-07 58.2 97 37.1
FvH4_5g39742 Fragaria vesca HOM05D000023 ORTHO05D000014 6.7e-07 57.8 116 34.5
C08p10220 Brassica napus HOM05D000023 ORTHO05D000014 8.8e-07 57.4 75 42.7
TWI77G0940 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.1e-06 57.0 119 34.5
Glyma.20G064800 Glycine max HOM05D000023 ORTHO05D000014 1.5e-06 56.6 93 34.4
Oeu055220.1 Olea europaea HOM05D000023 ORTHO05D000014 1.5e-06 56.6 116 34.5
Atru.chr1.1880 Acer truncatum HOM05D000023 ORTHO05D000014 2.6e-06 55.8 167 31.1
BolC3t19320H Brassica oleracea HOM05D000023 ORTHO05D000014 2.6e-06 55.8 75 38.7
Hma1.2p1_0479F.1_g161750 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 2.6e-06 55.8 115 33.0
Glyma.02G159600 Glycine max HOM05D000023 ORTHO05D000014 3.3e-06 55.5 110 31.8
Rhsim01G0081000 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.3e-06 55.5 48 52.1
Rhsim05G0190500 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.3e-06 55.5 48 52.1
Atru.chr6.523 Acer truncatum HOM05D000023 ORTHO05D000014 4.4e-06 55.1 117 31.6
Glyma.10G121900 Glycine max HOM05D000023 ORTHO05D000014 4.4e-06 55.1 79 40.5
Rhsim07G0175200 Rhododendron simsii HOM05D000023 ORTHO05D000014 4.4e-06 55.1 120 30.8
Rhsim10G0066300 Rhododendron simsii HOM05D017719 ORTHO05D019411 4.4e-06 55.1 82 35.4
Rhsim03G0126000 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.7e-06 54.7 70 42.9
Rhsim09G0032000 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.7e-06 54.7 49 51.0
RhsimUnG0167600 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.7e-06 54.7 70 42.9
Atru.chr12.1930 Acer truncatum HOM05D000023 ORTHO05D000014 7.4e-06 54.3 117 32.5
Atru.chr12.1937 Acer truncatum HOM05D000023 ORTHO05D000014 7.4e-06 54.3 117 32.5
Glyma.06G108300 Glycine max HOM05D000023 ORTHO05D000014 7.4e-06 54.3 108 33.3


User provided reference genes

Program Settings