Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-194 682.6 363 100.0
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.4e-193 679.5 363 99.7
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 5.1e-183 644.4 364 95.6
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 5.1e-183 644.4 364 95.6
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 2.6e-166 589.0 367 87.2
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 7.4e-166 587.4 363 88.4
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 9.7e-166 587.0 363 88.4
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 6.3e-165 584.3 363 87.3
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 8.2e-165 583.9 363 88.4
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 9.1e-164 580.5 363 86.8
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 9.1e-164 580.5 363 86.8
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.2e-163 580.1 366 87.2
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.0e-162 577.0 367 86.4
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.0e-162 577.0 367 86.4
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 5.5e-161 571.2 363 85.7
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 6.1e-160 567.8 364 85.7
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.2e-158 563.5 363 84.8
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 2.6e-158 562.4 366 84.4
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.7e-157 559.7 367 82.8
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 7.7e-155 550.8 367 82.0
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 5.0e-154 548.1 349 86.5
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 4.8e-149 531.6 367 80.1
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 3.5e-147 525.4 364 79.7
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 5.6e-129 464.9 334 77.5
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.5e-110 403.7 371 59.8
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 3.3e-105 386.0 374 57.5
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 7.4e-89 331.6 371 51.5
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 7.4e-89 331.6 370 52.4
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.8e-88 329.7 370 51.9
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.8e-88 329.7 370 51.9
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 4.8e-88 328.9 369 52.6
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.1e-87 326.2 377 49.1
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.0e-87 325.9 377 48.5
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 9.0e-87 324.7 368 51.6
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 4.5e-86 322.4 368 51.6
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.9e-85 319.7 368 48.9
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 4.9e-85 318.9 371 50.7
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.9e-85 318.9 371 50.7
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.4e-84 317.4 367 49.6
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.4e-84 317.4 372 49.5
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.4e-84 317.4 368 50.3
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.1e-84 315.1 372 49.7
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 7.1e-84 315.1 368 50.0
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 9.3e-84 314.7 363 50.7
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.7e-83 313.2 372 49.2
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.7e-83 313.2 372 49.2
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 4.6e-83 312.4 364 50.3
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 6.0e-83 312.0 369 50.9
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.0e-83 312.0 368 49.7
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 7.9e-83 311.6 372 50.3
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-82 310.8 368 50.0
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.5e-81 306.6 377 48.8
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.5e-81 306.6 371 48.5
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 4.3e-81 305.8 329 52.9
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 4.3e-81 305.8 365 49.0
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 9.6e-81 304.7 364 48.4
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 2.1e-80 303.5 371 49.3
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 6.2e-80 302.0 323 51.7
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.8e-79 300.4 365 46.8
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.1e-79 299.7 366 49.5
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 5.3e-79 298.9 324 53.4
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 9.0e-79 298.1 409 46.0
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.2e-78 297.7 367 48.8
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.5e-78 297.4 368 48.1
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.6e-78 296.6 375 46.9
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 3.4e-78 296.2 320 52.2
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.0e-77 294.7 370 48.1
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.7e-77 293.9 377 45.4
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.4e-77 291.6 371 47.2
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.1e-76 291.2 366 45.9
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.2e-76 289.7 375 45.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-75 287.7 371 46.4
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.6e-75 285.8 366 47.5
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.0e-74 284.6 376 47.1
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.3e-74 284.3 372 45.2
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 5.1e-74 282.3 379 46.2
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.5e-73 280.8 355 46.5
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 7.4e-73 278.5 353 47.6
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 9.7e-73 278.1 379 45.6
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 9.7e-73 278.1 375 43.2
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.3e-72 277.7 337 47.5
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 2.2e-72 276.9 370 45.9
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.1e-71 274.6 369 45.3
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.4e-71 274.2 357 45.9
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.4e-71 274.2 369 44.4
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.8e-71 273.9 372 42.5
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 3.1e-71 273.1 372 44.9
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 4.1e-71 272.7 368 45.7
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.2e-70 271.2 372 43.8
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 2.6e-70 270.0 374 44.7
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 7.7e-70 268.5 365 44.9
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.0e-69 268.1 379 44.3
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 8.5e-69 265.0 347 45.0
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.4e-68 264.2 357 45.4
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.4e-68 264.2 373 45.0
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 2.5e-68 263.5 365 43.3
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 5.5e-68 262.3 369 45.8
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 5.5e-68 262.3 306 48.7
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.2e-67 261.2 377 42.7
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 2.1e-67 260.4 352 46.3
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 2.7e-67 260.0 370 46.5
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 3.0e-66 256.5 365 43.3
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 3.9e-66 256.1 371 46.1
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 5.1e-66 255.8 365 43.0
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 6.7e-66 255.4 327 45.3
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 6.7e-66 255.4 369 44.7
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 2.8e-64 250.0 371 42.6
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 2.8e-64 250.0 367 43.6
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.1e-63 248.1 370 43.0
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 5.3e-63 245.7 348 41.4
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 3.4e-62 243.0 371 42.3
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.8e-61 239.6 370 41.9
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.1e-60 238.0 305 44.6
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.6e-59 234.2 358 36.9
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 6.1e-59 232.3 324 44.4
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.3e-58 230.3 391 39.6
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.0e-58 229.9 328 44.5
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 4.4e-57 226.1 328 41.8
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 9.7e-57 224.9 375 41.9
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.8e-56 223.4 344 39.2
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 7.7e-54 215.3 348 41.4
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.0e-53 214.9 372 40.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 9.4e-52 208.4 373 38.9
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 4.7e-51 206.1 374 39.8
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.6e-49 200.3 373 38.9
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 3.3e-49 199.9 332 39.5
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 3.7e-48 196.4 280 43.9
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 5.3e-47 192.6 275 43.3
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.9e-45 186.8 277 40.1
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 8.0e-43 178.7 197 48.7
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 5.9e-30 136.0 378 33.6
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 5.0e-29 132.9 129 55.8
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.0e-26 125.2 130 52.3
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.4e-25 119.8 136 44.9
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 2.8e-24 117.1 390 29.7
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.3e-24 115.5 138 42.0
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-21 107.8 130 43.8
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.9e-21 107.1 125 44.0
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.0e-18 98.6 157 38.9
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.1e-18 97.1 197 33.5
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.2e-17 95.1 244 31.1
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 5.8e-17 92.8 348 26.4
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 4.9e-16 89.7 372 25.0
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.1e-15 88.6 100 45.0
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.3e-13 81.6 383 24.3
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.1e-12 78.6 99 45.5
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 9.5e-12 75.5 236 28.4
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.5e-09 68.2 127 31.5
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 2.9e-08 63.9 61 47.5
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 2.1e-06 57.8 80 38.8
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 4.6e-06 56.6 78 38.5


User provided reference genes

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