Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 6.7e-87 323.9 158 100.0
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 1.9e-86 322.4 158 99.4
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 4.6e-72 274.6 135 98.5
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 4.6e-72 274.6 135 98.5
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 2.8e-69 265.4 135 93.3
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 2.1e-64 249.2 135 87.4
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 3.8e-58 228.4 134 80.6
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 6.5e-58 227.6 134 79.9
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 1.9e-57 226.1 137 77.4
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 4.8e-53 211.5 116 82.8
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 1.1e-52 210.3 139 73.4
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 5.3e-52 208.0 113 81.4
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 7.5e-46 187.6 137 65.7
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 2.2e-37 159.5 134 56.0
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 1.4e-36 156.8 135 55.6
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.8e-36 156.4 135 55.6
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 2.4e-36 156.0 137 55.5
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 2.4e-36 156.0 135 56.3
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 5.4e-36 154.8 141 53.9
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 5.4e-36 154.8 116 61.2
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 9.2e-36 154.1 134 54.5
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 2.0e-35 152.9 136 54.4
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 2.7e-35 152.5 134 53.0
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 3.5e-35 152.1 116 59.5
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 4.5e-35 151.8 140 52.9
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 4.5e-35 151.8 130 56.2
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 4.5e-35 151.8 133 53.4
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 5.9e-35 151.4 137 54.0
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 5.9e-35 151.4 105 61.0
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 5.9e-35 151.4 105 61.0
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 1.0e-34 150.6 134 53.7
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 1.3e-34 150.2 114 60.5
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 1.7e-34 149.8 137 54.0
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 2.3e-34 149.4 115 60.9
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 2.3e-34 149.4 136 52.9
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 2.3e-34 149.4 130 55.4
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 2.9e-34 149.1 105 61.0
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 3.8e-34 148.7 111 55.0
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 3.8e-34 148.7 136 53.7
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 5.0e-34 148.3 136 52.2
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 5.0e-34 148.3 114 59.6
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 6.6e-34 147.9 139 51.8
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 6.6e-34 147.9 139 51.8
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 6.6e-34 147.9 138 51.4
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 8.6e-34 147.5 137 54.7
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 8.6e-34 147.5 137 54.7
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 8.6e-34 147.5 137 54.7
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 1.5e-33 146.7 130 56.2
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 1.5e-33 146.7 116 56.0
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 1.5e-33 146.7 136 54.4
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 1.9e-33 146.4 137 53.3
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 1.9e-33 146.4 135 54.8
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 2.5e-33 146.0 141 51.8
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.5e-33 146.0 116 57.8
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 4.3e-33 145.2 136 49.3
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 5.6e-33 144.8 137 52.6
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 7.3e-33 144.4 136 52.9
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 9.5e-33 144.1 137 52.6
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 2.8e-32 142.5 101 60.4
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 3.6e-32 142.1 108 55.6
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 8.0e-32 141.0 129 52.7
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 1.0e-31 140.6 136 51.5
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 1.8e-31 139.8 137 51.1
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 2.3e-31 139.4 138 49.3
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 3.0e-31 139.0 138 50.7
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 3.0e-31 139.0 123 54.5
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 4.0e-31 138.7 134 50.7
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 1.2e-30 137.1 135 50.4
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 1.2e-30 137.1 122 53.3
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 1.5e-30 136.7 107 56.1
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 4.4e-30 135.2 121 51.2
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 5.7e-30 134.8 131 53.4
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 5.7e-30 134.8 138 50.7
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 1.3e-29 133.7 138 49.3
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 1.7e-29 133.3 104 55.8
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 1.7e-29 133.3 130 49.2
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 2.2e-29 132.9 135 48.9
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 2.2e-29 132.9 135 49.6
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 4.9e-29 131.7 104 55.8
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 2.4e-28 129.4 134 51.5
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 3.2e-28 129.0 137 46.0
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 2.0e-27 126.3 137 46.0
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 1.0e-26 124.0 133 47.4
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 1.0e-26 124.0 142 45.1
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 1.7e-26 123.2 103 51.5
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 3.0e-26 122.5 142 44.4
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 3.0e-26 122.5 104 54.8
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 5.0e-26 121.7 136 45.6
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 1.1e-25 120.6 121 48.8
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 1.5e-25 120.2 113 54.0
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 2.8e-24 115.9 130 42.3
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 3.1e-23 112.5 126 43.7
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 4.0e-23 112.1 109 47.7
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 5.8e-22 108.2 109 48.6
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 5.8e-14 81.6 131 32.8
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 2.9e-13 79.3 118 33.1
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 8.3e-13 77.8 139 33.8
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 2.4e-12 76.3 87 42.5
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 4.1e-12 75.5 87 42.5
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 5.4e-12 75.1 105 35.2
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 5.4e-12 75.1 87 42.5
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 5.4e-12 75.1 77 46.8
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 9.2e-12 74.3 84 41.7
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 9.2e-12 74.3 140 34.3
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 7.8e-11 71.2 84 41.7
Gohir.D09G053020 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.0e-10 70.9 143 34.3
Oeu024845.1 Olea europaea HOM05D005430 ORTHO05D007814 1.3e-10 70.5 101 34.7
Gohir.A09G053300 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.3e-10 69.7 143 33.6
Manes.04G148500 Manihot esculenta HOM05D000256 ORTHO05D000119 2.3e-10 69.7 115 32.2
Gorai.006G055400 Gossypium raimondii HOM05D005430 ORTHO05D007814 3.0e-10 69.3 143 33.6
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 8.6e-10 67.8 140 30.7
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 1.1e-09 67.4 134 33.6
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 1.1e-09 67.4 137 29.2
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 1.5e-09 67.0 137 30.7
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 1.9e-09 66.6 138 28.3
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.5e-09 66.2 80 38.8
Migut.H02436 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.3e-09 65.9 103 33.0
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.3e-09 65.5 109 31.2
Migut.H02457 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.6e-08 63.5 107 32.7
Rhsim09G0049800 Rhododendron simsii HOM05D000256 ORTHO05D000119 1.6e-08 63.5 102 32.4
RcHm_v2.0_Chr4g0396541 Rosa chinensis HOM05D000256 ORTHO05D000119 1.6e-08 63.5 118 31.4
Ciclev10023991m.g Citrus clementina HOM05D000256 ORTHO05D000119 2.8e-08 62.8 125 32.8
Peaxi162Scf01007g00016 Petunia axillaris HOM05D000256 ORTHO05D000119 3.6e-08 62.4 133 34.6
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.7e-08 62.0 109 33.9
PGR083G1564 Punica granatum HOM05D005430 ORTHO05D007814 4.7e-08 62.0 84 38.1
Eucgr.H00099 Eucalyptus grandis HOM05D010815 ORTHO05D011855 8.1e-08 61.2 95 35.8
SalBow2G2503 Salvia bowleyana HOM05D005430 ORTHO05D000119 8.1e-08 61.2 120 30.0
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 8.1e-08 61.2 104 30.8
Potri.010G008300 Populus trichocarpa HOM05D000256 ORTHO05D000119 1.8e-07 60.1 80 36.2
unitig_699.g19174 Utricularia gibba HOM05D000256 ORTHO05D000119 2.3e-07 59.7 84 36.9
TWI14G0081 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 3.1e-07 59.3 127 29.9
CsaV3_3G049910 Cucumis sativus L. HOM05D000256 ORTHO05D000119 4.0e-07 58.9 164 29.9
CAN.G884.1 Capsicum annuum HOM05D000256 ORTHO05D000119 5.2e-07 58.5 131 30.5
Gorai.009G341000 Gossypium raimondii HOM05D005430 ORTHO05D007814 6.8e-07 58.2 131 29.0
Migut.N00479 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.5e-06 57.0 98 34.7
PGSC0003DMG400037544 Solanum tuberosum HOM05D000256 ORTHO05D000119 2.0e-06 56.6 104 33.7
PSO724G0195 Papaver somniferum HOM05D000256 ORTHO05D000119 3.4e-06 55.8 81 34.6
Carub.0002s1136 Capsella rubella HOM05D000256 ORTHO05D000119 4.4e-06 55.5 89 32.6
Ciclev10024107m.g Citrus clementina HOM05D000256 ORTHO05D000119 4.4e-06 55.5 125 28.8
CAN.G229.22 Capsicum annuum HOM05D000256 ORTHO05D000119 5.8e-06 55.1 122 28.7
Hma1.2p1_0785F.1_g217560 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 5.8e-06 55.1 124 29.8
CANSAT35G0230 Cannabis sativa HOM05D000256 ORTHO05D000119 7.6e-06 54.7 93 30.1
CiPaw.13G128600 Carya illinoinensis HOM05D000256 ORTHO05D000119 9.9e-06 54.3 106 27.4


User provided reference genes

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