Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p39420 Brassica napus HOM05D031451 ORTHO05D026454 8.6e-51 203.4 103 100.0
BolC1t03891H Brassica oleracea HOM05D031451 ORTHO05D026454 8.6e-51 203.4 103 100.0
BraA01t03223Z Brassica rapa HOM05D031451 ORTHO05D026454 9.2e-29 130.2 89 80.9
Thhalv10017650m.g Eutrema salsugineum HOM05D000436 ORTHO05D001944 1.9e-13 79.3 44 88.6
A04p29010 Brassica napus HOM05D000436 ORTHO05D001944 4.2e-13 78.2 44 88.6
BraA04t18374Z Brassica rapa HOM05D000436 ORTHO05D001944 4.2e-13 78.2 44 88.6
Carub.0004s1979 Capsella rubella HOM05D000436 ORTHO05D001944 5.4e-13 77.8 44 86.4
AL4G34820 Arabidopsis lyrata HOM05D000436 ORTHO05D001944 9.3e-13 77.0 44 86.4
AT2G37880 Arabidopsis thaliana HOM05D000436 ORTHO05D001944 9.3e-13 77.0 44 86.4
CARHR132430 Cardamine hirsuta HOM05D000436 ORTHO05D001944 9.3e-13 77.0 44 86.4
Sp4g20190 Schrenkiella parvula HOM05D000436 ORTHO05D001944 1.2e-12 76.6 44 86.4
C04p66250 Brassica napus HOM05D000436 ORTHO05D001944 3.5e-12 75.1 44 86.4
BolC4t28129H Brassica oleracea HOM05D000436 ORTHO05D001944 3.5e-12 75.1 44 86.4
BcaB01g03748 Brassica carinata HOM05D000436 ORTHO05D001944 6.6e-11 70.9 44 81.8
THA.LOC104805624 Tarenaya hassleriana HOM05D000436 ORTHO05D001944 1.1e-10 70.1 43 76.7
Dinv37127 Davidia involucrata HOM05D000436 ORTHO05D001944 1.9e-10 69.3 46 67.4
BcaB01g03743 Brassica carinata HOM05D000436 ORTHO05D001944 2.5e-10 68.9 43 79.1
BcaC01g05587 Brassica carinata HOM05D000436 ORTHO05D001944 2.5e-10 68.9 43 79.1
A03p20910 Brassica napus HOM05D000436 ORTHO05D001944 2.5e-10 68.9 43 79.1
BolC3t14854H Brassica oleracea HOM05D000436 ORTHO05D001944 2.5e-10 68.9 43 79.1
Lj2C87T10 Lonicera japonica HOM05D000436 ORTHO05D001944 3.3e-10 68.6 45 71.1
C03p24560 Brassica napus HOM05D000436 ORTHO05D001944 4.3e-10 68.2 41 80.5
BraA03t11331Z Brassica rapa HOM05D000436 ORTHO05D001944 4.3e-10 68.2 41 80.5
Hma1.2p1_1498F.1_g287150 Hydrangea macrophylla HOM05D000436 ORTHO05D001944 4.3e-10 68.2 46 67.4
Aa31sc78G10 Aethionema arabicum HOM05D031451 ORTHO05D026454 5.6e-10 67.8 38 81.6
Aa31sc78G20 Aethionema arabicum HOM05D000436 ORTHO05D001944 5.6e-10 67.8 38 81.6
Aa31sc88G90 Aethionema arabicum HOM05D000436 ORTHO05D001944 5.6e-10 67.8 38 81.6
Solyc09g011350.3 Solanum lycopersicum HOM05D000436 ORTHO05D001944 9.6e-10 67.0 45 66.7
Sopen09g006070 Solanum pennellii HOM05D000436 ORTHO05D001944 9.6e-10 67.0 45 66.7
PGSC0003DMG400024262 Solanum tuberosum HOM05D000436 ORTHO05D001944 9.6e-10 67.0 45 66.7
Nitab4.5_0011665g0010 Nicotiana tabacum HOM05D000436 ORTHO05D001944 4.8e-09 64.7 52 55.8
DCAR_028777 Daucus carota HOM05D000436 ORTHO05D001944 1.1e-08 63.5 47 63.8
Nitab4.5_0000362g0090 Nicotiana tabacum HOM05D000436 ORTHO05D001944 1.8e-08 62.8 45 62.2
Cc06_g02150 Coffea canephora HOM05D000436 ORTHO05D001944 2.4e-08 62.4 44 63.6
Oeu053777.1 Olea europaea HOM05D000436 ORTHO05D001944 3.1e-08 62.0 43 65.1
Manes.08G086100 Manihot esculenta HOM05D000436 ORTHO05D001944 5.3e-08 61.2 43 60.5
Peaxi162Scf00318g00024 Petunia axillaris HOM05D000436 ORTHO05D001944 9.0e-08 60.5 45 64.4
Actinidia13823 Actinidia chinensis HOM05D000436 ORTHO05D001944 1.2e-07 60.1 45 60.0
Atru.chr8.2079 Acer truncatum HOM05D000436 ORTHO05D001944 1.5e-07 59.7 40 62.5
COL.COLO4_14712 Corchorus olitorius HOM05D000436 ORTHO05D001944 1.5e-07 59.7 40 65.0
Migut.J00272 Erythranthe guttata HOM05D000436 ORTHO05D001944 1.5e-07 59.7 40 65.0
CANSAT35G0644 Cannabis sativa HOM05D000436 ORTHO05D001944 2.6e-07 58.9 65 46.2
Cpa.g.sc56.51 Carica papaya HOM05D000436 ORTHO05D001944 2.6e-07 58.9 65 46.2
Ciclev10013699m.g Citrus clementina HOM05D000436 ORTHO05D001944 2.6e-07 58.9 40 60.0
Eucgr.B02722 Eucalyptus grandis HOM05D000436 ORTHO05D001944 2.6e-07 58.9 63 47.6
SGA_v2.0_scaffold85G26821 Striga asiatica HOM05D000436 ORTHO05D001944 2.6e-07 58.9 47 57.4
ECA236G3548 Erigeron canadensis HOM05D000436 ORTHO05D001944 3.4e-07 58.5 39 71.8
Rhsim05G0197100 Rhododendron simsii HOM05D000436 ORTHO05D001944 3.4e-07 58.5 45 62.2
Lsat_1_v5_gn_8_84741 Lactuca sativa HOM05D000436 ORTHO05D001944 4.5e-07 58.2 45 64.4
Duzib106G2012 Durio zibethinus HOM05D000436 ORTHO05D001944 7.6e-07 57.4 40 60.0
Actinidia29174 Actinidia chinensis HOM05D000436 ORTHO05D001944 1.3e-06 56.6 44 61.4
MELO3C003172.2 Cucumis melo HOM05D000436 ORTHO05D001944 1.3e-06 56.6 45 60.0
CAN.G229.36 Capsicum annuum HOM05D000436 ORTHO05D001944 1.7e-06 56.2 43 58.1
CsaV3_4G025490 Cucumis sativus L. HOM05D000436 ORTHO05D001944 1.7e-06 56.2 45 60.0
FAN14G5121 Fragaria x ananassa HOM05D000436 ORTHO05D001944 2.2e-06 55.8 40 62.5
arahy.Tifrunner.gnm1.ann1.WYXM7K Arachis hypogaea HOM05D000436 ORTHO05D001944 2.9e-06 55.5 44 59.1
Haze_20873 Corylus avellana HOM05D000436 ORTHO05D001944 2.9e-06 55.5 40 60.0
FvH4_6g12850 Fragaria vesca HOM05D000436 ORTHO05D001944 2.9e-06 55.5 40 62.5
FAN09G0948 Fragaria x ananassa HOM05D000436 ORTHO05D001944 2.9e-06 55.5 40 62.5
Gohir.A09G153000 Gossypium hirsutum HOM05D000436 ORTHO05D001944 2.9e-06 55.5 40 55.0
RcHm_v2.0_Chr3g0464851 Rosa chinensis HOM05D000436 ORTHO05D001944 2.9e-06 55.5 40 62.5
Duzib093G0023 Durio zibethinus HOM05D000436 ORTHO05D001944 3.8e-06 55.1 65 40.0
FAN05G2034 Fragaria x ananassa HOM05D000436 ORTHO05D001944 3.8e-06 55.1 40 60.0
TWI74G1143 Tripterygium wilfordii HOM05D000436 ORTHO05D001944 3.8e-06 55.1 62 45.2
AUR62036864 Chenopodium quinoa HOM05D000436 ORTHO05D001944 4.9e-06 54.7 36 66.7
Ca_26603_v3 Cicer arietinum L. HOM05D000012 ORTHO05D007895 4.9e-06 54.7 44 56.8
HanXRQChr04g0124551 Helianthus annuus HOM05D000436 ORTHO05D001944 4.9e-06 54.7 38 63.2
Sc01g0004730 Simmondsia chinensis HOM05D000436 ORTHO05D001944 4.9e-06 54.7 43 55.8
Cfa017309 Carpinus fangiana HOM05D000436 ORTHO05D001944 6.4e-06 54.3 40 57.5
TPR.G27948 Trifolium pratense HOM05D000436 ORTHO05D001944 6.4e-06 54.3 44 56.8
Gohir.D09G148800 Gossypium hirsutum HOM05D000436 ORTHO05D001944 8.4e-06 53.9 40 55.0
Gorai.006G169800 Gossypium raimondii HOM05D000436 ORTHO05D001944 8.4e-06 53.9 40 55.0
PGR031G2276 Punica granatum HOM05D000436 ORTHO05D001944 8.4e-06 53.9 36 63.9


User provided reference genes

Program Settings