Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 1.1e-131 473.4 248 100.0
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 1.1e-131 473.4 248 100.0
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 1.1e-131 473.4 248 100.0
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 9.1e-131 470.3 248 99.2
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 7.2e-128 460.7 248 97.2
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 4.4e-109 398.3 248 89.1
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 1.3e-105 386.7 248 83.9
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 1.3e-105 386.7 248 83.9
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 1.3e-105 386.7 248 83.9
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 5.5e-104 381.3 249 85.1
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 6.8e-102 374.4 233 86.3
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 7.5e-101 370.9 248 81.9
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 7.5e-101 370.9 248 81.9
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 8.9e-94 347.4 252 79.8
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.2e-93 347.1 252 79.4
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 2.5e-88 329.3 251 74.5
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 3.6e-87 325.5 248 76.6
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 3.1e-86 322.4 254 74.0
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 3.0e-57 226.1 250 61.6
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 6.7e-41 171.8 284 49.3
Thhalv10008484m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 8.7e-41 171.4 276 50.0
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 1.9e-40 170.2 284 48.9
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 7.4e-40 168.3 277 49.1
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 1.7e-36 157.1 300 48.0
Thhalv10024164m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 4.6e-34 149.1 121 71.9
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.5e-32 143.3 271 44.3
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 1.6e-31 140.6 196 53.6
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 1.6e-31 140.6 196 53.6
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 2.1e-31 140.2 268 47.0
Aa31LG1G3780 Aethionema arabicum HOM05D004441 ORTHO05D003109 6.9e-30 135.2 293 43.7
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 5.8e-29 132.1 271 43.2
C08p48340 Brassica napus HOM05D004441 ORTHO05D003109 7.6e-29 131.7 268 41.8
BolC8t52373H Brassica oleracea HOM05D004441 ORTHO05D003109 7.6e-29 131.7 268 41.8
BraA09t41810Z Brassica rapa HOM05D004441 ORTHO05D003109 5.5e-27 125.6 271 42.4
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 5.1e-25 119.0 308 37.3
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 6.7e-25 118.6 293 39.6
A09p64850 Brassica napus HOM05D004441 ORTHO05D003109 1.1e-24 117.9 271 41.7
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 5.7e-24 115.5 307 39.1
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 5.7e-24 115.5 309 37.2
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 3.7e-23 112.8 291 41.2
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 6.3e-23 112.1 291 41.6
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.4e-22 110.9 308 36.4
BcaC07g41791 Brassica carinata HOM05D004441 ORTHO05D003109 3.1e-22 109.8 268 38.4
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 3.1e-22 109.8 319 37.3
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.1e-22 109.4 291 40.2
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 9.0e-22 108.2 304 38.5
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.5e-21 107.5 298 37.2
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 2.0e-21 107.1 307 36.5
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 2.1e-18 97.1 263 38.8
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 1.1e-16 91.3 262 37.4
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 4.3e-16 89.4 263 38.0
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 5.7e-16 89.0 274 36.5
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 5.7e-16 89.0 274 36.5
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 7.4e-16 88.6 274 38.0
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.7e-15 87.4 327 33.9
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 2.2e-15 87.0 328 34.8
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 3.7e-15 86.3 329 34.0
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 3.7e-15 86.3 264 36.4
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.7e-15 86.3 311 33.4
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 4.8e-15 85.9 292 37.7
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 4.8e-15 85.9 332 33.1
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 8.2e-15 85.1 266 36.8
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.1e-14 84.7 244 39.3
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.1e-14 84.7 291 35.1
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.1e-14 84.7 286 36.7
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.8e-14 84.0 288 35.1
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.1e-14 82.8 291 34.7
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 6.9e-14 82.0 290 35.9
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 6.9e-14 82.0 329 32.2
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 6.9e-14 82.0 329 32.2
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 9.1e-14 81.6 287 36.2
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 9.1e-14 81.6 288 38.2
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.2e-13 81.3 303 33.7
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.2e-13 81.3 287 34.5
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.5e-13 80.9 293 36.2
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 3.4e-13 79.7 292 34.6
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 3.4e-13 79.7 262 35.5
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 5.9e-13 79.0 303 33.7
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.0e-12 78.2 287 36.2
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 2.9e-12 76.6 195 38.5
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 2.9e-12 76.6 305 33.4
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 3.8e-12 76.3 286 35.3
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 8.5e-12 75.1 206 38.8
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.9e-11 73.9 212 37.3
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.9e-11 73.9 290 33.1
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 5.5e-11 72.4 280 33.9
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 5.5e-11 72.4 274 34.3
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 5.5e-11 72.4 214 37.4
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 7.2e-11 72.0 260 36.2
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 7.2e-11 72.0 283 33.2
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 7.2e-11 72.0 283 33.2
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 1.2e-10 71.2 320 32.8
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.6e-10 70.9 324 33.3
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 3.6e-10 69.7 292 34.2
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 6.1e-10 68.9 227 37.4
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.8e-09 67.4 305 30.5
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 1.8e-09 67.4 320 32.2
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.9e-09 66.2 227 33.5
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 5.1e-09 65.9 291 33.7
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 5.1e-09 65.9 291 33.7
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 8.8e-09 65.1 286 33.2
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 8.8e-09 65.1 193 39.4
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 8.8e-09 65.1 263 32.3
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 2.0e-08 63.9 323 31.3
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 2.6e-08 63.5 271 32.8
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 3.3e-08 63.2 166 39.8
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.4e-08 62.8 292 32.2
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 5.7e-08 62.4 285 31.6
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 5.7e-08 62.4 254 33.9
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 5.7e-08 62.4 283 29.3
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.7e-07 60.8 308 31.2
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.2e-07 60.5 251 34.3
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 2.8e-07 60.1 317 30.6
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 4.8e-07 59.3 290 31.4
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 6.3e-07 58.9 285 28.1
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 6.3e-07 58.9 286 32.5
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 6.3e-07 58.9 157 40.1
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 6.3e-07 58.9 228 33.3
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 8.2e-07 58.5 290 31.7
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 1.4e-06 57.8 275 34.2
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 1.8e-06 57.4 287 32.8
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 2.4e-06 57.0 251 31.1
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 2.4e-06 57.0 335 29.6
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 3.1e-06 56.6 194 37.6
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 3.1e-06 56.6 318 30.2
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 3.1e-06 56.6 277 30.0
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 4.1e-06 56.2 300 32.0


User provided reference genes

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