Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 0.0e+00 1121.7 623 100.0
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 0.0e+00 1121.7 623 100.0
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 0.0e+00 1096.6 622 95.8
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 0.0e+00 1096.6 622 95.8
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 3.1e-297 1024.6 624 90.9
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 3.1e-289 998.0 562 96.6
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.7e-288 995.0 622 87.9
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.7e-288 995.0 622 87.9
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 2.7e-288 995.0 627 90.0
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 7.7e-288 993.4 622 87.8
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 5.0e-287 990.7 622 87.9
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.4e-276 956.1 627 85.6
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 6.8e-276 953.7 620 86.3
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 2.2e-274 948.7 624 85.1
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.0e-263 913.3 624 82.9
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.6e-237 826.2 582 79.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 7.9e-232 807.4 617 77.1
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 9.3e-217 757.3 424 92.5
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 1.2e-208 730.3 667 64.6
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 1.2e-208 730.3 667 64.6
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 3.0e-207 725.7 623 66.5
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 1.5e-206 723.4 666 64.1
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.9e-206 723.0 664 64.0
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.9e-206 723.0 652 64.3
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 9.7e-206 720.7 664 63.7
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 1.6e-205 719.9 688 62.4
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.7e-205 718.8 639 65.1
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 4.8e-205 718.4 664 63.6
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 4.8e-205 718.4 673 63.0
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 3.1e-204 715.7 674 63.2
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 5.3e-204 714.9 657 63.6
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 9.0e-204 714.1 673 62.6
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 9.0e-204 714.1 668 63.2
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.2e-203 713.8 621 66.2
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.5e-203 713.4 664 63.3
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.6e-203 712.6 657 64.5
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 7.7e-203 711.1 672 60.4
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.0e-202 710.7 668 63.0
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 8.5e-202 707.6 672 62.8
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.1e-201 707.2 672 62.6
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 3.2e-201 705.7 516 75.6
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 7.2e-201 704.5 672 62.5
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.2e-200 703.7 669 63.5
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.6e-200 703.4 700 58.1
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.8e-199 699.9 663 62.6
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 9.7e-198 694.1 666 61.6
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.3e-197 693.7 643 63.3
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.3e-197 693.7 637 63.0
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 2.8e-197 692.6 650 62.2
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 4.8e-197 691.8 667 62.4
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.4e-196 690.3 664 62.2
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 6.5e-194 681.4 674 61.3
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.5e-193 679.5 630 62.5
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.5e-193 679.5 664 60.5
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.2e-193 678.7 661 61.4
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 5.5e-193 678.3 644 62.4
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 5.5e-193 678.3 657 62.3
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 2.1e-192 676.4 667 61.6
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 3.6e-192 675.6 565 68.3
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 6.1e-192 674.9 686 60.3
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.3e-191 672.9 677 60.3
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.7e-191 671.4 737 56.9
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 6.7e-191 671.4 677 60.6
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.1e-190 670.6 614 64.5
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 2.8e-189 666.0 562 68.5
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 1.4e-188 663.7 625 62.4
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 2.4e-188 662.9 641 61.6
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 5.3e-188 661.8 552 68.1
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.0e-188 661.4 642 61.1
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 3.5e-187 659.1 668 60.5
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 2.2e-186 656.4 677 60.1
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.5e-185 652.9 613 62.2
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 5.5e-185 651.7 672 58.3
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 5.5e-185 651.7 630 61.3
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.7e-184 648.7 677 58.8
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.1e-184 648.3 672 58.2
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.4e-183 647.1 636 60.8
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 5.2e-183 645.2 562 67.4
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.4e-180 636.3 787 53.4
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.7e-178 630.2 673 57.7
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 2.9e-178 629.4 626 59.3
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 3.8e-178 629.0 672 57.1
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.8e-178 629.0 651 57.9
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 8.5e-178 627.9 652 59.4
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 8.5e-178 627.9 616 62.0
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 6.8e-175 618.2 676 54.3
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 9.8e-174 614.4 514 69.1
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.7e-173 613.6 723 52.0
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 3.6e-168 595.9 696 54.9
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 3.0e-167 592.8 512 67.0
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.9e-161 573.5 523 58.9
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 4.0e-159 565.8 636 57.9
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 4.9e-157 558.9 496 66.9
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 7.8e-155 551.6 668 50.6
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.7e-154 550.4 457 69.1
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 9.5e-153 544.7 680 52.9
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.4e-148 530.8 659 49.2
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.8e-144 516.5 613 53.8
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 8.9e-143 511.5 523 54.9
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 9.2e-140 501.5 616 53.6
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 3.5e-139 499.6 688 50.0
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.1e-137 494.6 660 47.6
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.1e-137 494.6 615 53.2
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 6.2e-136 488.8 679 48.3
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.2e-133 480.3 410 69.0
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.1e-127 461.5 459 61.4
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 3.1e-119 433.3 529 47.8
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 4.2e-116 422.9 596 45.8
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.0e-114 418.3 722 40.4
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.6e-107 392.9 595 43.7
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.9e-105 387.5 563 44.4
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 3.1e-103 380.2 503 51.5
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 2.2e-101 374.0 306 77.5
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 6.5e-101 372.5 660 41.7
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 3.9e-98 363.2 524 45.6
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 5.7e-97 359.4 543 45.1
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 6.1e-91 339.3 279 67.7
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 8.7e-90 335.5 304 71.1
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 2.9e-77 293.9 275 71.3
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.9e-70 269.6 305 53.8
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.0e-67 259.2 180 84.4
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 5.2e-58 229.9 191 77.5
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 4.5e-54 216.9 148 79.7
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.3e-50 204.5 188 76.1
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.0e-49 201.4 294 41.8
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.7e-48 197.2 292 48.3
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.2e-41 175.6 103 91.3
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.7e-38 164.5 278 43.9
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 4.6e-38 163.7 217 57.6
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 4.0e-34 150.6 90 83.3
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 4.0e-34 150.6 90 83.3
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.4e-33 147.5 200 45.5
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 2.4e-31 141.4 81 77.8
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.3e-28 131.0 288 33.3
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 4.7e-27 127.1 77 83.1
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.9e-24 117.1 89 75.3
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.2e-17 95.9 218 36.2
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 2.0e-17 95.1 326 25.2
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 4.4e-17 94.0 58 72.4
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 9.2e-15 86.3 167 35.3
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 7.8e-14 83.2 51 82.4
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 2.1e-11 75.1 63 55.6
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.4e-10 71.6 215 29.8
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 8.4e-08 63.2 53 54.7
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.9e-07 62.0 59 61.0
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.3e-07 59.7 36 86.1
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.2e-06 59.3 58 55.2
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.7e-06 58.2 34 85.3
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 4.6e-06 57.4 32 87.5


User provided reference genes

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