Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 3.1e-187 658.3 327 100.0
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 1.3e-182 642.9 328 98.5
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 8.2e-172 607.1 333 93.1
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 4.1e-171 604.7 333 92.5
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 6.9e-163 577.4 326 88.7
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 3.2e-160 568.5 325 86.5
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 9.7e-157 557.0 327 85.0
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 1.5e-154 549.7 329 86.3
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 4.5e-154 548.1 323 84.5
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 2.9e-153 545.4 323 83.6
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 2.5e-152 542.3 323 83.0
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 2.0e-133 479.6 426 61.3
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 1.0e-126 457.2 336 69.6
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 2.8e-119 432.6 341 63.9
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 1.5e-117 426.8 343 63.6
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 1.5e-117 426.8 343 63.6
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 2.0e-117 426.4 341 63.6
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 4.4e-117 425.2 342 62.6
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 8.3e-116 421.0 343 63.0
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 3.5e-114 415.6 338 60.9
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 2.3e-113 412.9 336 61.6
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 5.0e-113 411.8 343 59.8
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 3.6e-111 405.6 331 61.6
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 2.3e-110 402.9 336 61.3
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 8.9e-110 401.0 325 62.8
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 5.8e-109 398.3 305 66.9
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 1.3e-108 397.1 340 58.8
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 8.3e-108 394.4 322 62.4
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.2e-106 390.6 332 59.0
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 1.6e-106 390.2 328 58.8
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.6e-106 390.2 324 60.2
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 2.7e-106 389.4 335 56.1
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 3.5e-106 389.0 339 59.6
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.0e-105 387.5 339 60.2
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.3e-105 387.1 334 57.8
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 1.1e-104 384.0 341 58.9
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 3.3e-104 382.5 342 59.6
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.3e-104 382.5 344 56.7
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 4.3e-104 382.1 339 58.7
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 1.2e-103 380.6 338 57.7
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 2.1e-103 379.8 278 68.7
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 2.8e-103 379.4 340 57.1
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 6.8e-102 374.8 333 56.5
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 3.4e-101 372.5 277 67.5
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 7.5e-101 371.3 342 56.7
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 1.3e-100 370.5 330 57.6
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 4.9e-100 368.6 339 54.9
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 7.1e-99 364.8 329 59.9
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 9.2e-99 364.4 338 53.6
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 1.7e-97 360.1 342 54.7
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 1.7e-97 360.1 346 55.8
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 6.6e-97 358.2 338 53.3
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 6.6e-97 358.2 322 55.9
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 6.6e-97 358.2 332 55.7
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 8.6e-97 357.8 332 55.4
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 1.5e-96 357.1 333 55.0
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 5.6e-96 355.1 338 53.0
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 9.6e-96 354.4 333 54.7
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 9.6e-96 354.4 320 58.4
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 6.2e-95 351.7 322 57.5
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 8.1e-95 351.3 314 56.4
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 1.8e-94 350.1 314 56.1
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 5.2e-94 348.6 335 54.0
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 8.9e-94 347.8 312 57.4
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 2.6e-93 346.3 331 55.0
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 4.9e-92 342.0 336 53.0
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 1.1e-91 340.9 335 54.9
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 1.2e-90 337.4 378 50.3
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 1.2e-90 337.4 323 55.4
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 1.6e-90 337.0 329 53.5
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 2.1e-90 336.7 329 56.8
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 2.7e-90 336.3 345 51.6
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 3.5e-90 335.9 334 53.0
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 1.0e-89 334.3 328 54.6
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 3.9e-89 332.4 334 51.5
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 1.9e-88 330.1 329 55.3
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 4.8e-87 325.5 328 52.4
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.8e-86 323.6 311 54.7
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 6.9e-86 321.6 272 58.5
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 2.0e-85 320.1 329 55.6
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 4.4e-85 318.9 319 54.9
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 9.9e-85 317.8 286 56.3
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 4.9e-84 315.5 344 50.3
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 4.9e-84 315.5 276 58.0
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 1.4e-83 313.9 302 55.6
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 4.0e-78 295.8 318 50.0
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 9.9e-77 291.2 335 47.2
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 2.7e-74 283.1 337 46.0
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 7.4e-64 248.4 173 66.5
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 5.5e-59 232.3 210 55.7
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 4.5e-53 212.6 226 48.2
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 3.2e-51 206.5 275 41.5
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 9.7e-48 194.9 173 59.5
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 2.2e-47 193.7 285 41.8
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 7.7e-45 185.3 167 54.5
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 1.3e-44 184.5 128 75.8
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 1.1e-43 181.4 190 57.4
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 1.1e-40 171.4 137 60.6
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 5.0e-36 156.0 110 74.5
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 8.0e-34 148.7 284 35.6
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 6.3e-31 139.0 257 33.1
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 7.0e-30 135.6 198 41.4
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 2.6e-29 133.7 167 44.3
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 1.7e-28 131.0 338 30.2
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.5e-27 127.1 154 41.6
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 2.4e-22 110.5 112 50.0
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 1.6e-21 107.8 88 60.2
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 6.5e-20 102.4 105 51.4
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 4.0e-17 93.2 92 48.9
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 2.0e-13 80.9 124 38.7
Glyma.07G264001 Glycine max HOM05D006958 ORTHO05D008814 2.8e-10 70.5 75 53.3
Ah.09g227430 Amaranthus hybridus HOM05D006958 ORTHO05D008814 2.9e-07 60.5 79 41.8
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 1.8e-06 57.8 37 67.6
HPP92_009560 Vanilla planifolia HOM05D001084 ORTHO05D001275 2.4e-06 57.4 63 54.0


User provided reference genes

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