Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p36250 Brassica napus HOM05D013546 ORTHO05D014955 2.5e-141 505.4 241 100.0
C01p40840 Brassica napus HOM05D013546 ORTHO05D014955 3.5e-95 352.1 178 94.9
BraA03t10225Z Brassica rapa HOM05D013546 ORTHO05D014955 1.1e-91 340.5 192 87.5
BolC1t03583H Brassica oleracea HOM05D013546 ORTHO05D014955 4.0e-91 338.6 178 92.1
A10p07820 Brassica napus HOM05D013546 ORTHO05D014955 4.1e-80 302.0 166 88.6
BolC1t04040H Brassica oleracea HOM05D013546 ORTHO05D014955 4.9e-65 251.9 125 97.6
C07p15310 Brassica napus HOM05D013546 ORTHO05D014955 2.2e-17 93.6 60 81.7
A10p07810 Brassica napus HOM05D013546 ORTHO05D014955 8.5e-17 91.7 47 95.7
Sp3g01540 Schrenkiella parvula HOM05D000189 ORTHO05D006628 6.1e-15 85.5 74 64.9
BNapus_Darmor_BZH_scaffold_99p00030 Brassica napus HOM05D000189 ORTHO05D006628 8.0e-15 85.1 74 64.9
BolC1t05899H Brassica oleracea HOM05D000189 ORTHO05D006628 8.0e-15 85.1 74 64.9
BcaC09g49467 Brassica carinata HOM05D054371 ORTHO05D014955 4.0e-14 82.8 38 100.0
BcaC09g49468 Brassica carinata HOM05D054371 ORTHO05D014955 4.0e-14 82.8 38 100.0
BcaC09g47706 Brassica carinata HOM05D000189 ORTHO05D006628 8.8e-14 81.6 74 63.5
AL3G11870 Arabidopsis lyrata HOM05D000189 ORTHO05D006628 1.2e-13 81.3 74 62.2
BNapus_Darmor_BZH_scaffold_122p00020 Brassica napus HOM05D000189 ORTHO05D006628 1.2e-13 81.3 74 62.2
BcaB08g36882 Brassica carinata HOM05D000189 ORTHO05D006628 2.0e-13 80.5 72 62.5
A10p23010 Brassica napus HOM05D000189 ORTHO05D006628 3.3e-13 79.7 72 62.5
BolC9t58945H Brassica oleracea HOM05D000189 ORTHO05D006628 3.3e-13 79.7 72 62.5
BraA10t44370Z Brassica rapa HOM05D000189 ORTHO05D006628 3.3e-13 79.7 72 62.5
Thhalv10013742m.g Eutrema salsugineum HOM05D000189 ORTHO05D006628 7.5e-13 78.6 72 61.1
CARHR076510 Cardamine hirsuta HOM05D000189 ORTHO05D006628 1.7e-12 77.4 70 62.9
Cpa.g.sc179.18 Carica papaya HOM05D000189 ORTHO05D006628 1.7e-12 77.4 70 62.9
BcaC04g18913 Brassica carinata HOM05D000189 ORTHO05D006628 2.8e-12 76.6 72 61.1
C09p60980 Brassica napus HOM05D000189 ORTHO05D006628 2.8e-12 76.6 72 61.1
CARHR197270 Cardamine hirsuta HOM05D000189 ORTHO05D006628 2.8e-12 76.6 72 59.7
Aa31LG11G13570 Aethionema arabicum HOM05D000189 ORTHO05D006628 3.7e-12 76.3 70 61.4
Carub.0006s1423 Capsella rubella HOM05D000189 ORTHO05D006628 6.3e-12 75.5 72 58.3
THA.LOC104820953 Tarenaya hassleriana HOM05D000189 ORTHO05D006628 1.4e-11 74.3 70 60.0
C07p15320 Brassica napus HOM05D013546 ORTHO05D101534 2.4e-11 73.6 39 94.9
BcaB06g26615 Brassica carinata HOM05D013546 ORTHO05D014955 3.1e-11 73.2 69 56.5
Potri.017G113200 Populus trichocarpa HOM05D000189 ORTHO05D006628 3.1e-11 73.2 70 61.4
Prupe.3G239200 Prunus persica HOM05D000189 ORTHO05D006628 4.1e-11 72.8 70 61.4
AT3G02510 Arabidopsis thaliana HOM05D000189 ORTHO05D006628 5.3e-11 72.4 61 62.3
CANSAT64G0905 Cannabis sativa HOM05D000189 ORTHO05D006628 5.3e-11 72.4 70 60.0
Ciclev10011926m.g Citrus clementina HOM05D000189 ORTHO05D006628 5.3e-11 72.4 70 60.0
CiPaw.03G060200 Carya illinoinensis HOM05D000189 ORTHO05D006628 7.0e-11 72.0 72 59.7
QL02p051539 Quercus lobata HOM05D000189 ORTHO05D006628 9.1e-11 71.6 75 54.7
Thecc.04G136800 Theobroma cacao HOM05D000189 ORTHO05D006628 9.1e-11 71.6 70 60.0
Gohir.A11G162700 Gossypium hirsutum HOM05D000189 ORTHO05D006628 1.2e-10 71.2 70 60.0
Gohir.D11G168900 Gossypium hirsutum HOM05D000189 ORTHO05D006628 1.2e-10 71.2 70 60.0
Gorai.007G180500 Gossypium raimondii HOM05D000189 ORTHO05D006628 1.2e-10 71.2 70 60.0
Phvul.004G064300 Phaseolus vulgaris HOM05D000189 ORTHO05D006628 1.6e-10 70.9 70 58.6
VMungo0464G0226 Vigna mungo HOM05D000189 ORTHO05D006628 1.6e-10 70.9 70 58.6
C01p40830 Brassica napus HOM05D013546 ORTHO05D014955 2.0e-10 70.5 35 97.1
Carub.0003s0162 Capsella rubella HOM05D000189 ORTHO05D006628 2.0e-10 70.5 58 65.5
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.0e-10 70.5 70 58.6
MD17G1074800 Malus domestica HOM05D000189 ORTHO05D006628 2.0e-10 70.5 70 58.6
Sed0006396 Sechium edule HOM05D000189 ORTHO05D006628 2.0e-10 70.5 70 58.6
BcaC02g08415 Brassica carinata HOM05D013546 ORTHO05D014955 2.7e-10 70.1 82 47.6
Sp6g28090 Schrenkiella parvula HOM05D000189 ORTHO05D006628 2.7e-10 70.1 60 63.3
Cfa007941 Carpinus fangiana HOM05D000189 ORTHO05D006628 3.5e-10 69.7 75 53.3
MD07G1096100 Malus domestica HOM05D000189 ORTHO05D006628 3.5e-10 69.7 70 58.6
Potri.004G101800 Populus trichocarpa HOM05D000189 ORTHO05D006628 3.5e-10 69.7 70 57.1
AT5G16040 Arabidopsis thaliana HOM05D000189 ORTHO05D006628 4.5e-10 69.3 60 61.7
Lj2g0014953 Lotus japonicus HOM05D000189 ORTHO05D006628 4.5e-10 69.3 70 58.6
MELO3C022092.2 Cucumis melo HOM05D000189 ORTHO05D006628 5.9e-10 68.9 70 57.1
RcHm_v2.0_Chr2g0163071 Rosa chinensis HOM05D000189 ORTHO05D006628 5.9e-10 68.9 75 52.0
Sed0002805 Sechium edule HOM05D000189 ORTHO05D006628 5.9e-10 68.9 70 57.1
CsaV3_5G039170 Cucumis sativus L. HOM05D000189 ORTHO05D006628 7.7e-10 68.6 70 55.7
FvH4_6g45310 Fragaria vesca HOM05D000189 ORTHO05D006628 7.7e-10 68.6 75 52.0
FAN05G4849 Fragaria x ananassa HOM05D000298 ORTHO05D000553 7.7e-10 68.6 75 52.0
PGR042G3999 Punica granatum HOM05D000189 ORTHO05D006628 7.7e-10 68.6 60 61.7
Eucgr.J01476 Eucalyptus grandis HOM05D000189 ORTHO05D006628 1.0e-09 68.2 60 61.7
Atru.chr8.861 Acer truncatum HOM05D000189 ORTHO05D006628 1.3e-09 67.8 70 57.1
Medtr0024s0070 Medicago truncatula HOM05D000189 ORTHO05D006628 1.7e-09 67.4 70 57.1
TWI74G0720 Tripterygium wilfordii HOM05D000189 ORTHO05D006628 1.7e-09 67.4 70 57.1
TPR.G32472 Trifolium pratense HOM05D000189 ORTHO05D006628 2.2e-09 67.0 76 52.6
Ca_13738_v3 Cicer arietinum L. HOM05D000189 ORTHO05D006628 2.9e-09 66.6 70 55.7
Migut.H00204 Erythranthe guttata HOM05D000189 ORTHO05D006628 3.8e-09 66.2 90 50.0
Psat1g078920 Pisum sativum HOM05D000189 ORTHO05D006628 3.8e-09 66.2 70 55.7
AL6G26920 Arabidopsis lyrata HOM05D000189 ORTHO05D006628 5.0e-09 65.9 58 60.3
Lj2A446T44 Lonicera japonica HOM05D000189 ORTHO05D006628 5.0e-09 65.9 70 60.0
arahy.Tifrunner.gnm1.ann1.H2M9W7 Arachis hypogaea HOM05D000189 ORTHO05D006628 6.5e-09 65.5 70 54.3
TWI74G1546 Tripterygium wilfordii HOM05D000189 ORTHO05D006628 6.5e-09 65.5 70 55.7
PSO782G3998 Papaver somniferum HOM05D000189 ORTHO05D006628 8.5e-09 65.1 70 60.0
GSVIVG01031071001 Vitis vinifera HOM05D000189 ORTHO05D006628 8.5e-09 65.1 70 57.1
Aa31LG5G13010 Aethionema arabicum HOM05D000189 ORTHO05D006628 1.1e-08 64.7 58 60.3
PSO063G6465 Papaver somniferum HOM05D000189 ORTHO05D006628 1.1e-08 64.7 70 58.6
arahy.Tifrunner.gnm1.ann1.50M490 Arachis hypogaea HOM05D000189 ORTHO05D006628 1.5e-08 64.3 81 49.4
FAN14G4610 Fragaria x ananassa HOM05D000298 ORTHO05D006628 1.5e-08 64.3 58 60.3
Rhsim10G0063200 Rhododendron simsii HOM05D000189 ORTHO05D006628 1.5e-08 64.3 70 58.6
Aqoxy3G03932 Aquilegia oxysepala HOM05D000189 ORTHO05D006628 1.9e-08 63.9 70 58.6
SHI28229 Sapria himalayana HOM05D000189 ORTHO05D006628 1.9e-08 63.9 68 52.9
MSTRG.23563 Avicennia marina HOM05D000189 ORTHO05D006628 2.5e-08 63.5 75 53.3
Cc07_g08940 Coffea canephora HOM05D000189 ORTHO05D006628 3.2e-08 63.2 70 60.0
Nn3g17776 Nelumbo nucifera HOM05D000189 ORTHO05D006628 3.2e-08 63.2 70 57.1
Nn4g23772 Nelumbo nucifera HOM05D000189 ORTHO05D006628 3.2e-08 63.2 70 57.1
Sc11g0008230 Simmondsia chinensis HOM05D000189 ORTHO05D006628 3.2e-08 63.2 70 55.7
Ah.16g101890 Amaranthus hybridus HOM05D000298 ORTHO05D006628 4.2e-08 62.8 70 54.3
Dinv34843 Davidia involucrata HOM05D000189 ORTHO05D006628 4.2e-08 62.8 75 52.0
SGA_v2.0_scaffold33G13475 Striga asiatica HOM05D000189 ORTHO05D006628 4.2e-08 62.8 70 55.7
Actinidia36311 Actinidia chinensis HOM05D000189 ORTHO05D006628 5.5e-08 62.4 70 57.1
CSS0021672 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D006628 5.5e-08 62.4 70 57.1
AUR62008975 Chenopodium quinoa HOM05D000189 ORTHO05D006628 5.5e-08 62.4 68 54.4
AUR62014530 Chenopodium quinoa HOM05D000189 ORTHO05D006628 5.5e-08 62.4 68 54.4
vmacro05570 Vaccinium macrocarpon HOM05D000189 ORTHO05D006628 5.5e-08 62.4 70 57.1
unitig_60.g25410 Utricularia gibba HOM05D000189 ORTHO05D006628 7.2e-08 62.0 75 50.7
COL.COLO4_16185 Corchorus olitorius HOM05D000189 ORTHO05D006628 9.4e-08 61.6 149 36.9
DCAR_017208 Daucus carota HOM05D000189 ORTHO05D006628 9.4e-08 61.6 70 54.3
Dinv33930 Davidia involucrata HOM05D000189 ORTHO05D006628 9.4e-08 61.6 70 57.1
Hund13729 Selenicereus undatus HOM05D000189 ORTHO05D006628 9.4e-08 61.6 75 48.0
HPP92_026956 Vanilla planifolia HOM05D000189 ORTHO05D006628 9.4e-08 61.6 70 55.7
Hma1.2p1_0136F.1_g062140 Hydrangea macrophylla HOM05D000189 ORTHO05D006628 1.2e-07 61.2 70 54.3
Mapoly0030s0128 Marchantia polymorpha HOM05D000189 ORTHO05D006628 1.2e-07 61.2 70 55.7
TAR371G0089 Trochodendron aralioides HOM05D000189 ORTHO05D006628 1.6e-07 60.8 72 55.6
Glyma.19G046100 Glycine max HOM05D000189 ORTHO05D006628 2.1e-07 60.5 57 57.9
ATR0097G025 Amborella trichopoda HOM05D000189 ORTHO05D006628 2.7e-07 60.1 70 52.9
CSS0046451 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D006628 3.6e-07 59.7 70 55.7
CAN.G358.140 Capsicum annuum HOM05D000189 ORTHO05D006628 3.6e-07 59.7 70 54.3
Os08g0430700 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D006628 3.6e-07 59.7 75 49.3
Lalb_Chr02g0158281 Lupinus albus HOM05D000189 ORTHO05D006628 4.7e-07 59.3 57 56.1
Nitab4.5_0002288g0060 Nicotiana tabacum HOM05D000189 ORTHO05D006628 4.7e-07 59.3 70 54.3
Peaxi162Scf01327g00132 Petunia axillaris HOM05D000189 ORTHO05D006628 4.7e-07 59.3 70 54.3
Solyc02g085780.3 Solanum lycopersicum HOM05D000189 ORTHO05D006628 4.7e-07 59.3 70 52.9
Sopen02g030470 Solanum pennellii HOM05D000189 ORTHO05D006628 4.7e-07 59.3 70 52.9
PGSC0003DMG401012656 Solanum tuberosum HOM05D000189 ORTHO05D006628 4.7e-07 59.3 70 52.9
Nitab4.5_0004118g0130 Nicotiana tabacum HOM05D000189 ORTHO05D006628 6.1e-07 58.9 70 52.9
EL10Ac2g04596 Beta vulgaris HOM05D000189 ORTHO05D006628 8.0e-07 58.5 68 50.0
CDE05G0975 Ceratophyllum demersum HOM05D000298 ORTHO05D006628 8.0e-07 58.5 127 37.0
CDE05G3347 Ceratophyllum demersum HOM05D000189 ORTHO05D006628 8.0e-07 58.5 127 36.2
SalBow3G2679 Salvia bowleyana HOM05D000189 ORTHO05D006628 8.0e-07 58.5 61 62.3
Hund16131 Selenicereus undatus HOM05D000189 ORTHO05D006628 1.4e-06 57.8 74 47.3
Zm00001eb179510 Zea mays HOM05D000189 ORTHO05D006628 4.0e-06 56.2 93 43.0
ECA238G3704 Erigeron canadensis HOM05D000189 ORTHO05D006628 5.2e-06 55.8 56 57.1


User provided reference genes

Program Settings