Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 5.9e-110 401.0 216 100.0
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 5.9e-110 401.0 216 100.0
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 1.4e-42 177.2 231 51.1
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 1.4e-34 150.6 188 53.7
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 1.2e-33 147.5 184 54.9
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 5.1e-29 132.1 213 46.5
Sp2g05500 Schrenkiella parvula HOM05D012662 ORTHO05D008751 1.1e-26 124.4 185 49.7
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 1.5e-25 120.6 226 42.0
CARHR053990 Cardamine hirsuta HOM05D012662 ORTHO05D008751 3.8e-24 115.9 216 41.7
AT1G58070 Arabidopsis thaliana HOM05D012662 ORTHO05D008751 2.7e-22 109.8 229 38.9
BraA09t37484Z Brassica rapa HOM05D012662 ORTHO05D008751 6.2e-19 98.6 188 41.5
BcaC04g22113 Brassica carinata HOM05D012662 ORTHO05D008751 1.2e-17 94.4 188 42.0
C09p23200 Brassica napus HOM05D012662 ORTHO05D008751 1.2e-17 94.4 188 42.0
BolC9t55239H Brassica oleracea HOM05D012662 ORTHO05D008751 1.2e-17 94.4 188 42.0
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 2.6e-17 93.2 148 45.9
BolC4t24104H Brassica oleracea HOM05D012662 ORTHO05D008751 2.6e-17 93.2 60 78.3
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 3.4e-17 92.8 147 42.9
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 5.8e-17 92.0 208 38.9
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.0e-16 91.3 169 42.0
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 1.7e-16 90.5 144 47.9
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 2.2e-16 90.1 151 43.0
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 2.9e-16 89.7 125 48.0
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 3.8e-16 89.4 174 38.5
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 4.9e-16 89.0 152 46.1
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 4.9e-16 89.0 152 46.1
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 6.5e-16 88.6 192 40.1
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 6.5e-16 88.6 192 40.1
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 6.5e-16 88.6 192 40.1
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 1.1e-15 87.8 200 36.5
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 1.4e-15 87.4 164 43.3
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.4e-15 87.4 150 45.3
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.9e-15 87.0 182 42.3
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 2.5e-15 86.7 182 40.1
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 3.2e-15 86.3 145 44.1
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 4.2e-15 85.9 158 41.8
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 5.5e-15 85.5 100 58.0
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 5.5e-15 85.5 100 58.0
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 9.3e-15 84.7 130 45.4
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 9.3e-15 84.7 210 38.6
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 1.6e-14 84.0 194 38.1
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 1.6e-14 84.0 151 45.7
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 2.1e-14 83.6 145 43.4
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 2.7e-14 83.2 143 42.0
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 4.6e-14 82.4 154 41.6
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 6.0e-14 82.0 114 47.4
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 6.0e-14 82.0 190 37.4
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.0e-13 81.3 161 42.2
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 1.0e-13 81.3 168 42.3
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 2.3e-13 80.1 162 41.4
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 3.0e-13 79.7 156 39.7
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 3.9e-13 79.3 149 42.3
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.5e-12 77.4 144 40.3
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 1.5e-12 77.4 173 38.7
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 1.9e-12 77.0 166 38.6
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 1.9e-12 77.0 191 37.2
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 2.5e-12 76.6 204 35.8
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 7.4e-12 75.1 172 37.2
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 9.6e-12 74.7 181 37.6
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 1.6e-11 73.9 183 36.1
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 2.8e-11 73.2 165 38.8
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 6.3e-11 72.0 172 35.5
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 6.3e-11 72.0 147 40.8
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 1.8e-10 70.5 130 43.1
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 2.4e-10 70.1 160 40.0
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 2.4e-10 70.1 119 42.9
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 3.1e-10 69.7 143 44.1
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 4.1e-10 69.3 215 30.7
BcaB05g22043 Brassica carinata HOM05D007616 ORTHO05D008751 5.3e-10 68.9 90 58.9
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 5.3e-10 68.9 160 41.2
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 5.3e-10 68.9 146 41.1
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 9.0e-10 68.2 163 39.3
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 1.2e-09 67.8 187 34.2
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 1.5e-09 67.4 153 40.5
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 1.5e-09 67.4 153 39.9
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 2.0e-09 67.0 190 36.8
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 2.6e-09 66.6 141 43.3
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 3.4e-09 66.2 177 36.2
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 4.5e-09 65.9 160 37.5
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 5.9e-09 65.5 140 35.7
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 7.6e-09 65.1 187 34.8
Thhalv10023811m.g Eutrema salsugineum HOM05D012662 ORTHO05D008751 1.3e-08 64.3 137 41.6
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 2.2e-08 63.5 199 33.7
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 2.2e-08 63.5 123 40.7
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 5.0e-08 62.4 114 42.1
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 6.5e-08 62.0 99 46.5
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 8.5e-08 61.6 128 37.5
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 1.1e-07 61.2 69 55.1
BcaC07g37418 Brassica carinata HOM05D012662 ORTHO05D008751 2.5e-07 60.1 59 66.1
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 4.2e-07 59.3 217 29.5
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 5.5e-07 58.9 86 50.0
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 2.7e-06 56.6 128 40.6


User provided reference genes

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