Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p35540 Brassica napus HOM05D003071 ORTHO05D003641 1.8e-33 145.2 66 100.0
BolC1t03514H Brassica oleracea HOM05D003071 ORTHO05D003641 9.1e-22 106.3 49 100.0
BcaC09g49529 Brassica carinata HOM05D003071 ORTHO05D003641 1.6e-18 95.5 42 92.9
A03p62630 Brassica napus HOM05D003071 ORTHO05D003641 1.2e-13 79.3 42 85.7
BraA03t15332Z Brassica rapa HOM05D003071 ORTHO05D003641 1.2e-13 79.3 42 85.7
BcaC01g00923 Brassica carinata HOM05D003071 ORTHO05D003641 2.7e-13 78.2 42 81.0
A08p17050 Brassica napus HOM05D003071 ORTHO05D003641 2.7e-13 78.2 42 81.0
C03p85980 Brassica napus HOM05D003071 ORTHO05D003641 2.7e-13 78.2 42 81.0
BolC3t20889H Brassica oleracea HOM05D003071 ORTHO05D003641 2.7e-13 78.2 42 81.0
BraA08t33667Z Brassica rapa HOM05D003071 ORTHO05D003641 2.7e-13 78.2 42 81.0
AL7G17220 Arabidopsis lyrata HOM05D003071 ORTHO05D003641 3.5e-13 77.8 42 81.0
Sp7g31900 Schrenkiella parvula HOM05D003071 ORTHO05D003641 4.5e-13 77.4 42 81.0
BcaNung03362 Brassica carinata HOM05D003071 ORTHO05D003641 5.9e-13 77.0 42 81.0
Carub.0007s0625 Capsella rubella HOM05D003071 ORTHO05D003641 5.9e-13 77.0 40 85.0
C07p60180 Brassica napus HOM05D003071 ORTHO05D003641 1.0e-12 76.3 39 87.2
BolC7t46459H Brassica oleracea HOM05D003071 ORTHO05D003641 1.0e-12 76.3 39 87.2
CARHR242700 Cardamine hirsuta HOM05D003071 ORTHO05D003641 1.3e-12 75.9 42 78.6
BcaB03g11849 Brassica carinata HOM05D003071 ORTHO05D003641 2.3e-12 75.1 39 82.1
AT4G34150 Arabidopsis thaliana HOM05D003071 ORTHO05D003641 2.9e-12 74.7 39 84.6
Thhalv10026060m.g Eutrema salsugineum HOM05D003071 ORTHO05D003641 1.1e-11 72.8 39 82.1
Aa31LG2G16610 Aethionema arabicum HOM05D003071 ORTHO05D003641 3.3e-11 71.2 42 73.8
BcaNung03798 Brassica carinata HOM05D003071 ORTHO05D003641 4.3e-11 70.9 41 80.5
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 4.3e-11 70.9 41 80.5
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 4.3e-11 70.9 41 80.5
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 4.3e-11 70.9 41 80.5
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 4.3e-11 70.9 41 80.5
FvH4_2g05480 Fragaria vesca HOM05D003071 ORTHO05D003641 7.3e-11 70.1 60 53.3
FAN15G1650 Fragaria x ananassa HOM05D003071 ORTHO05D003641 7.3e-11 70.1 60 53.3
FAN24G1840 Fragaria x ananassa HOM05D003071 ORTHO05D003641 7.3e-11 70.1 60 53.3
FAN20G2052 Fragaria x ananassa HOM05D003071 ORTHO05D003641 9.5e-11 69.7 60 51.7
Gohir.A03G187000 Gossypium hirsutum HOM05D003071 ORTHO05D003641 1.2e-10 69.3 39 74.4
Prupe.8G131800 Prunus persica HOM05D003071 ORTHO05D003641 1.6e-10 68.9 39 74.4
Thecc.02G105800 Theobroma cacao HOM05D003071 ORTHO05D003641 2.1e-10 68.6 39 74.4
Gohir.D02G207800 Gossypium hirsutum HOM05D003071 ORTHO05D003641 2.8e-10 68.2 39 71.8
Gorai.005G235700 Gossypium raimondii HOM05D003071 ORTHO05D003641 2.8e-10 68.2 39 71.8
DCAR_003613 Daucus carota HOM05D003071 ORTHO05D003641 3.6e-10 67.8 39 71.8
TAR625G0422 Trochodendron aralioides HOM05D003071 ORTHO05D003641 3.6e-10 67.8 39 71.8
CAN.G1231.18 Capsicum annuum HOM05D003071 ORTHO05D003641 4.7e-10 67.4 42 69.0
MD05G1087200 Malus domestica HOM05D003071 ORTHO05D003641 4.7e-10 67.4 39 69.2
THA.LOC104804383 Tarenaya hassleriana HOM05D003071 ORTHO05D003641 4.7e-10 67.4 39 74.4
EL10Ac9g22308 Beta vulgaris HOM05D003071 ORTHO05D003641 6.1e-10 67.0 39 71.8
Cpa.g.sc200.14 Carica papaya HOM05D003071 ORTHO05D003641 6.1e-10 67.0 41 70.7
PGR142G1514 Punica granatum HOM05D003071 ORTHO05D003641 6.1e-10 67.0 42 69.0
Solyc01g107740.3 Solanum lycopersicum HOM05D003071 ORTHO05D003641 6.1e-10 67.0 42 66.7
Sopen01g049920 Solanum pennellii HOM05D003071 ORTHO05D003641 6.1e-10 67.0 42 66.7
TWI79G1016 Tripterygium wilfordii HOM05D003071 ORTHO05D003641 6.1e-10 67.0 41 68.3
ATR0006G017 Amborella trichopoda HOM05D003071 ORTHO05D003641 8.0e-10 66.6 42 69.0
SalBow6G2089 Salvia bowleyana HOM05D003071 ORTHO05D003641 8.0e-10 66.6 39 71.8
THA.LOC104807253 Tarenaya hassleriana HOM05D003071 ORTHO05D003641 8.0e-10 66.6 37 75.7
TAR628G0589 Trochodendron aralioides HOM05D003071 ORTHO05D003641 8.0e-10 66.6 41 68.3
TAR628G1177 Trochodendron aralioides HOM05D003071 ORTHO05D003641 8.0e-10 66.6 41 68.3
vmacro19518 Vaccinium macrocarpon HOM05D003071 ORTHO05D003641 8.0e-10 66.6 39 71.8
GSVIVG01003176001 Vitis vinifera HOM05D003071 ORTHO05D003641 8.0e-10 66.6 39 71.8
FAN27G0649 Fragaria x ananassa HOM05D003071 ORTHO05D003641 1.0e-09 66.2 39 66.7
RcHm_v2.0_Chr6g0255751 Rosa chinensis HOM05D003071 ORTHO05D003641 1.0e-09 66.2 38 71.1
Cfa004559 Carpinus fangiana HOM05D003071 ORTHO05D003641 1.4e-09 65.9 39 69.2
Peaxi162Scf00016g02249 Petunia axillaris HOM05D003071 ORTHO05D003641 1.4e-09 65.9 45 64.4
Sc08g0001550 Simmondsia chinensis HOM05D003071 ORTHO05D003641 1.4e-09 65.9 39 71.8
COL.COLO4_32616 Corchorus olitorius HOM05D003071 ORTHO05D003641 1.8e-09 65.5 39 69.2
DCAR_022000 Daucus carota HOM05D003071 ORTHO05D003641 1.8e-09 65.5 39 66.7
Dinv15749 Davidia involucrata HOM05D003071 ORTHO05D003641 1.8e-09 65.5 39 69.2
Oeu017475.1 Olea europaea HOM05D003071 ORTHO05D003641 1.8e-09 65.5 38 68.4
Aqoxy6G02907 Aquilegia oxysepala HOM05D003071 ORTHO05D003641 2.3e-09 65.1 42 64.3
A05p28570 Brassica napus HOM05D018735 ORTHO05D022006 2.3e-09 65.1 52 61.5
CSS0037575 Camellia sinensis var. sinensis HOM05D003071 ORTHO05D003641 2.3e-09 65.1 41 65.9
Hma1.2p1_0796F.1_g219040 Hydrangea macrophylla HOM05D003071 ORTHO05D003641 2.3e-09 65.1 39 69.2
MD00G1045300 Malus domestica HOM05D003071 ORTHO05D003641 2.3e-09 65.1 46 63.0
PSO675G7902 Papaver somniferum HOM05D003071 ORTHO05D003641 2.3e-09 65.1 41 65.9
Peaxi162Scf00003g02441 Petunia axillaris HOM05D003071 ORTHO05D003641 2.3e-09 65.1 42 66.7
PGSC0003DMG402025869 Solanum tuberosum HOM05D003071 ORTHO05D003641 2.3e-09 65.1 42 66.7
SGA_v2.0_scaffold225G43090 Striga asiatica HOM05D003071 ORTHO05D003641 2.3e-09 65.1 37 73.0
Cc02_g19120 Coffea canephora HOM05D003071 ORTHO05D003641 3.1e-09 64.7 39 69.2
Duzib132G0166 Durio zibethinus HOM05D003071 ORTHO05D003641 3.1e-09 64.7 39 69.2
Duzib248G1024 Durio zibethinus HOM05D003071 ORTHO05D003641 3.1e-09 64.7 39 69.2
Oeu001762.2 Olea europaea HOM05D003071 ORTHO05D003641 3.1e-09 64.7 39 69.2
PSO170G0220 Papaver somniferum HOM05D003071 ORTHO05D003641 3.1e-09 64.7 39 69.2
PSO210G2766 Papaver somniferum HOM05D003071 ORTHO05D003641 3.1e-09 64.7 39 69.2
QL02p072870 Quercus lobata HOM05D003071 ORTHO05D003641 3.1e-09 64.7 37 73.0
QL11p034267 Quercus lobata HOM05D003071 ORTHO05D003641 3.1e-09 64.7 37 73.0
Rhsim05G0087300 Rhododendron simsii HOM05D003071 ORTHO05D003641 3.1e-09 64.7 38 71.1
RhsimUnG0060900 Rhododendron simsii HOM05D003071 ORTHO05D003641 3.1e-09 64.7 38 71.1
CSS0003976 Camellia sinensis var. sinensis HOM05D003071 ORTHO05D003641 4.0e-09 64.3 39 66.7
Haze_10152 Corylus avellana HOM05D003071 ORTHO05D003641 4.0e-09 64.3 39 66.7
PSO541G2166 Papaver somniferum HOM05D003071 ORTHO05D003641 4.0e-09 64.3 41 65.9
A03p39030 Brassica napus HOM05D018735 ORTHO05D022006 5.2e-09 63.9 52 59.6
Migut.B00376 Erythranthe guttata HOM05D003071 ORTHO05D003641 5.2e-09 63.9 39 69.2
QL11p027891 Quercus lobata HOM05D003071 ORTHO05D003641 5.2e-09 63.9 36 75.0
Actinidia00421 Actinidia chinensis HOM05D003071 ORTHO05D003641 6.8e-09 63.5 39 64.1
AUR62010270 Chenopodium quinoa HOM05D003071 ORTHO05D003641 6.8e-09 63.5 38 65.8
Dinv42181 Davidia involucrata HOM05D003071 ORTHO05D003641 6.8e-09 63.5 39 66.7
Glyma.01G244500 Glycine max HOM05D003071 ORTHO05D003641 6.8e-09 63.5 42 64.3
Glyma.11G000700 Glycine max HOM05D003071 ORTHO05D003641 6.8e-09 63.5 42 64.3
Mapoly0188s0003 Marchantia polymorpha HOM05D003071 ORTHO05D003641 6.8e-09 63.5 42 66.7
Medtr5g004870 Medicago truncatula HOM05D003071 ORTHO05D003641 6.8e-09 63.5 39 69.2
Nitab4.5_0003771g0040 Nicotiana tabacum HOM05D003071 ORTHO05D003641 6.8e-09 63.5 42 64.3
BraA06t23463Z Brassica rapa HOM05D018735 ORTHO05D022006 8.9e-09 63.2 51 60.8
Gohir.A01G007600 Gossypium hirsutum HOM05D003071 ORTHO05D003641 8.9e-09 63.2 39 66.7
Gohir.D01G007700 Gossypium hirsutum HOM05D003071 ORTHO05D003641 8.9e-09 63.2 39 66.7
Gorai.002G008800 Gossypium raimondii HOM05D003071 ORTHO05D003641 8.9e-09 63.2 39 66.7
MBI16_g12378_MAGBIO Magnolia biondii HOM05D003071 ORTHO05D003641 8.9e-09 63.2 42 64.3
Nn5g30392 Nelumbo nucifera HOM05D003071 ORTHO05D003641 8.9e-09 63.2 39 66.7
CiPaw.05G009500 Carya illinoinensis HOM05D003071 ORTHO05D003641 1.2e-08 62.8 39 64.1
DCAR_029078 Daucus carota HOM05D000231 ORTHO05D003641 1.2e-08 62.8 38 68.4
Nitab4.5_0002543g0110 Nicotiana tabacum HOM05D003071 ORTHO05D003641 1.2e-08 62.8 42 64.3
Hund00140 Selenicereus undatus HOM05D003071 ORTHO05D003641 1.2e-08 62.8 39 69.2
TWI75G0163 Tripterygium wilfordii HOM05D003071 ORTHO05D003641 1.2e-08 62.8 41 63.4
TAR628G1276 Trochodendron aralioides HOM05D003071 ORTHO05D003641 1.2e-08 62.8 38 68.4
Atru.chr5.2596 Acer truncatum HOM05D003071 ORTHO05D003641 1.5e-08 62.4 36 75.0
Atru.chr9.457 Acer truncatum HOM05D003071 ORTHO05D003641 1.5e-08 62.4 36 75.0
Lalb_Chr16g0376241 Lupinus albus HOM05D003071 ORTHO05D003641 1.5e-08 62.4 38 71.1
SGA_v2.0_scaffold32G13045 Striga asiatica HOM05D003071 ORTHO05D003641 1.5e-08 62.4 39 66.7
unitig_21.g20737 Utricularia gibba HOM05D003071 ORTHO05D003641 1.5e-08 62.4 37 70.3
Actinidia27965 Actinidia chinensis HOM05D003071 ORTHO05D003641 2.0e-08 62.0 39 64.1
BraA08t33902Z Brassica rapa HOM05D018735 ORTHO05D022006 2.0e-08 62.0 51 58.8
Eucgr.I01113 Eucalyptus grandis HOM05D003071 ORTHO05D003641 2.0e-08 62.0 36 72.2
Solyc10g050060.2 Solanum lycopersicum HOM05D003071 ORTHO05D003641 2.0e-08 62.0 42 64.3
Sopen10g021200 Solanum pennellii HOM05D003071 ORTHO05D003641 2.0e-08 62.0 42 64.3
Duzib052G0711 Durio zibethinus HOM05D003071 ORTHO05D003641 2.6e-08 61.6 36 72.2
Manes.10G077400 Manihot esculenta HOM05D003071 ORTHO05D003641 2.6e-08 61.6 38 63.2
Psat4g228360 Pisum sativum HOM05D003071 ORTHO05D003641 2.6e-08 61.6 39 66.7
Sed0005673 Sechium edule HOM05D003071 ORTHO05D003641 2.6e-08 61.6 39 69.2
PGSC0003DMG400006217 Solanum tuberosum HOM05D003071 ORTHO05D003641 2.6e-08 61.6 42 64.3
VMungo1215G2306 Vigna mungo HOM05D003071 ORTHO05D003641 2.6e-08 61.6 39 66.7
Actinidia17881 Actinidia chinensis HOM05D003071 ORTHO05D003641 3.4e-08 61.2 39 61.5
MSTRG.20176 Avicennia marina HOM05D003071 ORTHO05D003641 3.4e-08 61.2 37 70.3
CiPaw.05G009600 Carya illinoinensis HOM05D003071 ORTHO05D003641 3.4e-08 61.2 37 67.6
Phvul.002G053900 Phaseolus vulgaris HOM05D003071 ORTHO05D003641 3.4e-08 61.2 39 66.7
Potri.001G301900 Populus trichocarpa HOM05D003071 ORTHO05D003641 3.4e-08 61.2 38 65.8
HPP92_015276 Vanilla planifolia HOM05D003071 ORTHO05D003641 3.4e-08 61.2 36 69.4
CANSAT25G2199 Cannabis sativa HOM05D003071 ORTHO05D003641 5.8e-08 60.5 39 64.1
Ca_24339_v3 Cicer arietinum L. HOM05D003071 ORTHO05D003641 5.8e-08 60.5 42 61.9
Sabra09G0075000 Salix brachista HOM05D003071 ORTHO05D003641 5.8e-08 60.5 38 63.2
Haze_10149 Corylus avellana HOM05D003071 ORTHO05D003641 7.5e-08 60.1 39 64.1
Sed0025200 Sechium edule HOM05D003071 ORTHO05D003641 7.5e-08 60.1 36 69.4
GSVIVG01009437001 Vitis vinifera HOM05D003071 ORTHO05D003641 7.5e-08 60.1 38 65.8
ClCG02G006210 Citrullus lanatus HOM05D003071 ORTHO05D003641 9.8e-08 59.7 36 69.4
MELO3C018475.2 Cucumis melo HOM05D003071 ORTHO05D003641 9.8e-08 59.7 36 69.4
CsaV3_7G008320 Cucumis sativus L. HOM05D003071 ORTHO05D003641 9.8e-08 59.7 36 69.4
Nn3g20124 Nelumbo nucifera HOM05D003071 ORTHO05D003641 9.8e-08 59.7 37 70.3
BcaC09g49527 Brassica carinata HOM05D002078 ORTHO05D095667 1.3e-07 59.3 48 64.6
Haze_10150 Corylus avellana HOM05D003071 ORTHO05D003641 1.3e-07 59.3 39 64.1
Haze_10151 Corylus avellana HOM05D003071 ORTHO05D003641 1.3e-07 59.3 39 64.1
Gohir.A13G042900 Gossypium hirsutum HOM05D003071 ORTHO05D003641 1.3e-07 59.3 38 63.2
Gorai.013G046300 Gossypium raimondii HOM05D003071 ORTHO05D003641 1.3e-07 59.3 39 61.5
HanXRQChr16g0510001 Helianthus annuus HOM05D003071 ORTHO05D003641 1.3e-07 59.3 57 49.1
TWI31G0241 Tripterygium wilfordii HOM05D003071 ORTHO05D003641 1.3e-07 59.3 36 66.7
ECA234G1195 Erigeron canadensis HOM05D003071 ORTHO05D003641 1.7e-07 58.9 36 66.7
HanXRQChr03g0070221 Helianthus annuus HOM05D003071 ORTHO05D003641 1.7e-07 58.9 39 64.1
Lj1g0025517 Lotus japonicus HOM05D003071 ORTHO05D003641 1.7e-07 58.9 36 69.4
Sabra16G0189900 Salix brachista HOM05D003071 ORTHO05D003641 2.2e-07 58.5 38 63.2
Hund06325 Selenicereus undatus HOM05D003071 ORTHO05D003641 2.2e-07 58.5 37 64.9
Medtr5g004800 Medicago truncatula HOM05D003071 ORTHO05D003641 2.9e-07 58.2 37 67.6
HanXRQChr10g0302061 Helianthus annuus HOM05D003071 ORTHO05D003641 3.7e-07 57.8 37 62.2
Nn1g08103 Nelumbo nucifera HOM05D003071 ORTHO05D003641 4.9e-07 57.4 36 66.7
HanXRQChr03g0070201 Helianthus annuus HOM05D003071 ORTHO05D003641 8.3e-07 56.6 32 71.9
Lsat_1_v5_gn_5_114540 Lactuca sativa HOM05D003071 ORTHO05D003641 8.3e-07 56.6 36 63.9
Nn1g04735 Nelumbo nucifera HOM05D003071 ORTHO05D003641 8.3e-07 56.6 41 61.0
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 8.3e-07 56.6 39 61.5
Cfa021169 Carpinus fangiana HOM05D003071 ORTHO05D003641 1.1e-06 56.2 39 61.5
Ciclev10002299m.g Citrus clementina HOM05D003071 ORTHO05D003641 1.1e-06 56.2 39 61.5
Lsat_1_v5_gn_0_4121 Lactuca sativa HOM05D003071 ORTHO05D003641 1.1e-06 56.2 36 63.9
ECA236G3143 Erigeron canadensis HOM05D003071 ORTHO05D003641 1.4e-06 55.8 38 60.5
ECA240G3211 Erigeron canadensis HOM05D003071 ORTHO05D003641 1.9e-06 55.5 35 62.9
Potri.009G097900 Populus trichocarpa HOM05D003071 ORTHO05D003641 1.9e-06 55.5 38 60.5
PGR031G1423 Punica granatum HOM05D003071 ORTHO05D003641 2.4e-06 55.1 38 63.2
Nn3g20125 Nelumbo nucifera HOM05D003071 ORTHO05D003641 3.2e-06 54.7 35 65.7
Pp3c9_12510 Physcomitrium patens HOM05D003071 ORTHO05D003641 3.2e-06 54.7 38 55.3
Pp3c9_16970 Physcomitrium patens HOM05D003071 ORTHO05D003641 3.2e-06 54.7 36 61.1
Atru.chr13.747 Acer truncatum HOM05D003071 ORTHO05D003641 4.1e-06 54.3 38 57.9
Gohir.A05G205500 Gossypium hirsutum HOM05D003071 ORTHO05D003641 4.1e-06 54.3 38 63.2
Gohir.D05G208800 Gossypium hirsutum HOM05D003071 ORTHO05D003641 4.1e-06 54.3 38 63.2
Gorai.009G215200 Gossypium raimondii HOM05D003071 ORTHO05D003641 4.1e-06 54.3 38 63.2
Ciclev10029976m.g Citrus clementina HOM05D003071 ORTHO05D003641 5.4e-06 53.9 38 52.6
Duzib041G0003 Durio zibethinus HOM05D003071 ORTHO05D003641 5.4e-06 53.9 38 60.5
Thecc.08G001400 Theobroma cacao HOM05D003071 ORTHO05D003641 5.4e-06 53.9 38 60.5
CDE04G2560 Ceratophyllum demersum HOM05D003071 ORTHO05D003641 7.0e-06 53.5 40 57.5
Os06g0638900 Oryza sativa ssp. japonica HOM05D003071 ORTHO05D003641 9.2e-06 53.1 34 61.8
Potri.002G123200 Populus trichocarpa HOM05D003071 ORTHO05D003641 9.2e-06 53.1 37 62.2
Sabra16G0190000 Salix brachista HOM05D003071 ORTHO05D003641 9.2e-06 53.1 36 63.9
Zm00001eb387300 Zea mays HOM05D003071 ORTHO05D003641 9.2e-06 53.1 36 61.1


User provided reference genes

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