Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.4e-115 419.5 196 100.0
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 6.0e-69 264.6 124 100.0
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 6.0e-69 264.6 124 100.0
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 6.0e-69 264.6 124 100.0
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.7e-63 246.5 121 95.9
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 8.6e-60 234.2 121 90.9
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 7.3e-59 231.1 120 89.2
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 9.5e-59 230.7 121 89.3
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.6e-58 229.9 120 89.2
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.4e-57 226.1 119 87.4
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 2.6e-56 222.6 114 90.4
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 1.7e-55 219.9 121 86.8
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 5.6e-43 178.3 124 68.5
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 7.6e-40 167.9 119 66.4
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.5e-27 127.1 120 48.3
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 4.3e-27 125.6 111 53.2
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.6e-26 123.6 86 60.5
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 4.8e-26 122.1 86 58.1
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 4.8e-26 122.1 102 52.0
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 8.2e-26 121.3 111 51.4
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 8.2e-26 121.3 86 57.0
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 8.2e-26 121.3 124 49.2
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 2.4e-25 119.8 103 50.5
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 3.1e-25 119.4 89 51.7
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 6.9e-25 118.2 129 41.1
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 6.9e-25 118.2 118 50.0
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 9.0e-25 117.9 105 52.4
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.2e-24 117.5 99 55.6
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 1.5e-24 117.1 89 52.8
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 2.6e-24 116.3 89 49.4
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 2.6e-24 116.3 85 60.0
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 2.6e-24 116.3 110 43.6
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.4e-24 115.9 122 46.7
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.5e-24 115.5 124 41.9
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 5.8e-24 115.2 98 46.9
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 7.6e-24 114.8 88 53.4
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.0e-23 114.4 95 49.5
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 1.0e-23 114.4 120 43.3
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.0e-23 114.4 109 47.7
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.3e-23 114.0 89 50.6
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.7e-23 113.6 114 45.6
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.7e-23 113.6 89 49.4
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.7e-23 113.6 94 53.2
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 2.2e-23 113.2 129 41.1
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 2.9e-23 112.8 94 51.1
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 2.9e-23 112.8 94 51.1
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 3.8e-23 112.5 82 54.9
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 4.9e-23 112.1 89 48.3
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 4.9e-23 112.1 92 51.1
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 4.9e-23 112.1 99 45.5
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.9e-23 112.1 99 45.5
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 4.9e-23 112.1 102 47.1
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 4.9e-23 112.1 102 47.1
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 4.9e-23 112.1 101 50.5
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 6.5e-23 111.7 117 45.3
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 6.5e-23 111.7 100 47.0
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 6.5e-23 111.7 131 37.4
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 6.5e-23 111.7 134 41.0
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.5e-23 111.7 99 45.5
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.5e-23 111.7 99 45.5
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.5e-23 111.7 134 41.0
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 8.4e-23 111.3 86 53.5
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.1e-22 110.9 121 41.3
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 1.1e-22 110.9 88 51.1
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.1e-22 110.9 134 40.3
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 1.1e-22 110.9 91 51.6
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 1.1e-22 110.9 94 52.1
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.4e-22 110.5 88 52.3
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 1.4e-22 110.5 131 38.9
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.9e-22 110.2 97 48.5
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 1.9e-22 110.2 88 52.3
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 1.9e-22 110.2 89 49.4
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.9e-22 110.2 89 51.7
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 2.5e-22 109.8 89 49.4
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.2e-22 109.4 89 50.6
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.2e-22 109.4 89 50.6
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 3.2e-22 109.4 119 40.3
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 3.2e-22 109.4 93 49.5
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 4.2e-22 109.0 92 48.9
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 4.2e-22 109.0 102 49.0
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.2e-22 109.0 110 45.5
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 4.2e-22 109.0 89 52.8
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 4.2e-22 109.0 95 49.5
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 5.5e-22 108.6 89 48.3
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 5.5e-22 108.6 113 45.1
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 5.5e-22 108.6 113 45.1
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 5.5e-22 108.6 89 48.3
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 5.5e-22 108.6 130 40.8
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 5.5e-22 108.6 89 46.1
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 7.1e-22 108.2 89 48.3
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 9.3e-22 107.8 89 50.6
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 9.3e-22 107.8 88 52.3
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 9.3e-22 107.8 100 47.0
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.2e-21 107.5 94 45.7
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.2e-21 107.5 131 38.2
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.6e-21 107.1 89 50.6
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 1.6e-21 107.1 91 51.6
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.1e-21 106.7 115 43.5
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 2.7e-21 106.3 100 46.0
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 3.5e-21 105.9 98 48.0
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 6.0e-21 105.1 82 47.6
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 6.0e-21 105.1 76 59.2
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 6.0e-21 105.1 118 44.9
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 6.0e-21 105.1 91 47.3
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 7.9e-21 104.8 100 42.0
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 1.0e-20 104.4 94 45.7
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.0e-20 104.4 96 47.9
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.0e-20 104.4 123 41.5
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.0e-20 104.4 95 45.3
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.0e-20 104.4 134 38.8
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 1.3e-20 104.0 94 42.6
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.8e-20 103.6 89 44.9
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.8e-20 103.6 100 45.0
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 2.3e-20 103.2 100 45.0
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.3e-20 103.2 91 49.5
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 3.0e-20 102.8 92 50.0
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 3.0e-20 102.8 89 47.2
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 3.0e-20 102.8 79 49.4
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 5.1e-20 102.1 129 35.7
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 6.7e-20 101.7 98 43.9
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 8.7e-20 101.3 115 42.6
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 3.3e-19 99.4 89 44.9
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.3e-19 99.0 89 44.9
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 5.7e-19 98.6 70 60.0
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 7.4e-19 98.2 76 51.3
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 7.4e-19 98.2 87 49.4
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 7.4e-19 98.2 88 46.6
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 7.4e-19 98.2 89 47.2
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 7.4e-19 98.2 100 44.0
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 7.4e-19 98.2 131 35.1
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 7.4e-19 98.2 90 41.1
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 9.7e-19 97.8 100 42.0
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 9.7e-19 97.8 100 44.0
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 9.7e-19 97.8 100 44.0
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 9.7e-19 97.8 98 44.9
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 9.7e-19 97.8 89 47.2
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.3e-18 97.4 104 42.3
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.6e-18 97.1 89 46.1
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.6e-18 97.1 76 48.7
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.2e-18 96.7 93 44.1
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.2e-18 96.7 88 45.5
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 2.8e-18 96.3 96 43.8
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.7e-18 95.9 93 44.1
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 6.3e-18 95.1 89 46.1
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 8.2e-18 94.7 82 47.6
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.8e-17 93.6 97 41.2
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 2.4e-17 93.2 82 47.6
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 3.1e-17 92.8 89 43.8
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 4.1e-17 92.4 89 43.8
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.1e-17 92.4 93 40.9
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 5.3e-17 92.0 89 43.8
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 6.9e-17 91.7 89 43.8
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 6.9e-17 91.7 91 42.9
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 6.9e-17 91.7 91 42.9
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.2e-16 90.9 108 42.6
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 1.5e-16 90.5 89 42.7
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 2.0e-16 90.1 89 42.7
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 2.0e-16 90.1 89 42.7
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 2.0e-16 90.1 89 42.7
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 2.0e-16 90.1 89 42.7
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 2.6e-16 89.7 99 39.4
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 7.7e-16 88.2 98 44.9
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.0e-15 87.8 89 41.6
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.7e-15 87.0 98 40.8
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.2e-15 86.7 82 43.9
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 3.8e-15 85.9 114 39.5
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.4e-14 84.0 58 58.6
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 4.2e-14 82.4 105 42.9
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 5.5e-14 82.0 89 44.9
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 5.5e-14 82.0 90 41.1
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 1.2e-13 80.9 90 44.4
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 2.7e-13 79.7 60 48.3
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 4.3e-11 72.4 90 36.7
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 4.8e-10 68.9 57 47.4
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 4.5e-08 62.4 82 34.1
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 7.7e-08 61.6 70 35.7
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 3.8e-07 59.3 82 32.9
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 8.5e-07 58.2 82 35.4
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 1.1e-06 57.8 88 40.9
Sopen06g002410 Solanum pennellii HOM05D008739 ORTHO05D010871 1.4e-06 57.4 87 37.9
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 2.5e-06 56.6 59 37.3
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.2e-06 55.8 44 50.0
Peaxi162Scf00131g00137 Petunia axillaris HOM05D008739 ORTHO05D010871 4.2e-06 55.8 79 39.2
ATR1127G131 Amborella trichopoda HOM05D008739 ORTHO05D010871 5.5e-06 55.5 69 34.8
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 9.4e-06 54.7 70 35.7


User provided reference genes

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