Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 7.4e-49 196.8 95 100.0
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 3.1e-47 191.4 91 100.0
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 3.1e-47 191.4 91 100.0
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 5.9e-46 187.2 91 96.7
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 5.9e-46 187.2 91 97.8
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 4.4e-41 171.0 91 90.1
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 1.8e-34 149.1 89 80.9
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.7e-29 132.5 69 88.4
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 8.0e-27 123.6 57 100.0
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 8.0e-27 123.6 57 100.0
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 8.0e-27 123.6 57 100.0
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 4.0e-26 121.3 57 98.2
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 4.0e-26 121.3 57 98.2
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 4.0e-26 121.3 57 98.2
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 5.2e-26 120.9 57 98.2
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 5.2e-26 120.9 57 96.5
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 1.2e-25 119.8 57 96.5
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 1.2e-25 119.8 57 96.5
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 1.5e-25 119.4 93 66.7
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 1.5e-25 119.4 57 96.5
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 1.5e-25 119.4 57 96.5
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.0e-25 119.0 57 94.7
BraSC48t46297Z Brassica rapa HOM05D045689 ORTHO05D043271 4.4e-25 117.9 55 100.0
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 7.5e-25 117.1 57 94.7
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 7.5e-25 117.1 57 94.7
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 9.7e-25 116.7 57 93.0
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 1.3e-24 116.3 57 94.7
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 1.3e-24 116.3 57 94.7
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 1.3e-24 116.3 57 94.7
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 3.7e-24 114.8 57 93.0
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 6.3e-24 114.0 57 93.0
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-23 113.2 85 65.9
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-23 113.2 66 80.3
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 1.4e-23 112.8 57 93.0
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 1.4e-23 112.8 57 93.0
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 2.4e-23 112.1 66 80.3
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.1e-23 111.7 57 89.5
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.1e-23 111.7 57 89.5
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 4.1e-23 111.3 57 91.2
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 4.1e-23 111.3 57 91.2
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 7.0e-23 110.5 57 87.7
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.6e-22 109.4 79 69.6
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-22 109.4 57 86.0
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-22 109.4 57 86.0
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-22 109.4 57 86.0
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 2.0e-22 109.0 57 89.5
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 4.5e-22 107.8 57 89.5
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 7.7e-22 107.1 51 98.0
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 7.7e-22 107.1 54 90.7
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.0e-21 106.7 50 96.0
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 1.0e-21 106.7 57 87.7
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-21 105.5 57 84.2
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 6.5e-21 104.0 53 88.7
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 6.5e-21 104.0 57 84.2
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-16 89.7 57 71.9
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 3.7e-16 88.2 60 66.7
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.7e-16 88.2 51 82.4
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 3.7e-16 88.2 80 55.0
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 3.7e-16 88.2 60 66.7
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 4.1e-15 84.7 62 69.4
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 3.8e-13 78.2 36 100.0
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 3.8e-13 78.2 36 100.0
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 3.8e-13 78.2 36 100.0
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 3.8e-13 78.2 36 100.0
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 6.5e-13 77.4 40 87.5
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 6.5e-13 77.4 36 97.2
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.9e-12 75.9 36 97.2
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 2.5e-12 75.5 36 97.2
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.5e-12 75.5 36 97.2
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 2.5e-12 75.5 36 97.2
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-12 74.7 43 79.1
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 7.2e-12 73.9 36 94.4
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 1.6e-11 72.8 36 91.7
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 2.1e-11 72.4 36 94.4
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 2.8e-11 72.0 36 91.7
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 4.7e-11 71.2 38 84.2
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 6.1e-11 70.9 36 91.7
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 6.1e-11 70.9 36 91.7
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 8.0e-11 70.5 43 74.4
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.4e-10 69.7 36 91.7
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.4e-10 69.7 36 91.7
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 1.4e-10 69.7 36 91.7
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-10 69.7 36 86.1
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-10 69.7 36 86.1
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-10 68.6 37 83.8
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.0e-10 68.6 37 86.5
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 3.0e-10 68.6 36 86.1
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 4.0e-10 68.2 36 88.9
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 4.0e-10 68.2 38 81.6
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-09 65.5 48 66.7
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 3.4e-09 65.1 35 82.9
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 9.8e-09 63.5 32 87.5
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 1.7e-08 62.8 36 83.3
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 3.1e-07 58.5 32 81.2
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 4.1e-07 58.2 43 60.5


User provided reference genes

Program Settings