Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 4.4e-75 284.6 155 100.0
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 1.7e-63 246.1 155 91.0
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 1.4e-52 209.9 155 80.0
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 2.4e-33 146.0 83 96.4
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 2.4e-33 146.0 83 96.4
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 2.4e-33 146.0 83 96.4
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 2.4e-33 146.0 83 96.4
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 1.2e-32 143.7 154 61.7
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 1.2e-32 143.7 154 61.7
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 2.7e-32 142.5 83 95.2
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.8e-31 139.8 83 94.0
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.8e-31 139.8 83 94.0
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 5.6e-30 134.8 83 91.6
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 8.1e-29 131.0 83 88.0
BolC1t03449H Brassica oleracea HOM05D010793 ORTHO05D011945 2.4e-28 129.4 104 75.0
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 4.5e-27 125.2 81 86.4
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 2.2e-26 122.9 72 95.8
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 2.9e-26 122.5 72 94.4
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 3.8e-26 122.1 79 88.6
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 3.8e-26 122.1 81 85.2
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 6.5e-26 121.3 72 93.1
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 6.5e-26 121.3 81 85.2
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 1.1e-25 120.6 83 85.5
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 1.1e-25 120.6 83 85.5
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 1.4e-25 120.2 81 84.0
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 1.9e-25 119.8 79 87.3
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 1.6e-24 116.7 70 92.9
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 2.7e-24 115.9 81 82.7
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 4.6e-24 115.2 72 90.3
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 4.6e-24 115.2 72 90.3
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 4.6e-24 115.2 72 90.3
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 4.6e-24 115.2 72 90.3
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 7.9e-24 114.4 70 91.4
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 7.9e-24 114.4 70 91.4
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 1.0e-23 114.0 72 90.3
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 1.0e-23 114.0 72 90.3
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 1.0e-23 114.0 72 90.3
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 2.3e-23 112.8 70 90.0
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 2.3e-23 112.8 72 88.9
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 3.0e-23 112.5 69 89.9
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 3.9e-23 112.1 72 87.5
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 5.1e-23 111.7 72 88.9
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 8.7e-23 110.9 70 90.0
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 1.1e-22 110.5 72 88.9
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 1.1e-22 110.5 70 88.6
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 1.5e-22 110.2 67 89.6
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 2.5e-22 109.4 85 80.0
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 2.5e-22 109.4 72 87.5
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 5.7e-22 108.2 67 91.0
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 5.7e-22 108.2 72 86.1
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 7.4e-22 107.8 96 71.9
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 9.6e-22 107.5 74 82.4
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-21 107.1 85 75.3
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-21 107.1 74 83.8
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-21 107.1 74 83.8
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 2.1e-21 106.3 75 82.7
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.7e-21 105.5 72 83.3
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 4.8e-21 105.1 67 89.6
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 4.8e-21 105.1 72 83.3
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.8e-21 105.1 72 83.3
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 4.8e-21 105.1 74 81.1
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 8.2e-21 104.4 80 76.2
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-20 103.6 74 81.1
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 4.0e-20 102.1 90 68.9
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 5.3e-20 101.7 86 72.1
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 6.9e-20 101.3 74 78.4
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 9.0e-20 100.9 72 81.9
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 9.0e-20 100.9 86 72.1
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 9.0e-20 100.9 69 84.1
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 9.0e-20 100.9 69 84.1
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 1.2e-19 100.5 104 62.5
BraSC159t45718Z Brassica rapa HOM05D002965 ORTHO05D011945 1.2e-19 100.5 104 62.5
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 1.2e-19 100.5 104 62.5
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-19 100.5 74 78.4
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-19 100.5 86 70.9
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-19 100.1 72 83.3
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 2.6e-19 99.4 86 69.8
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 2.6e-19 99.4 69 81.2
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 3.4e-19 99.0 104 61.5
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.4e-19 99.0 80 68.8
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 3.4e-19 99.0 86 70.9
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 4.5e-19 98.6 71 78.9
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 5.8e-19 98.2 60 90.0
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 7.6e-19 97.8 67 80.6
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 7.6e-19 97.8 69 81.2
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 7.6e-19 97.8 72 80.6
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 7.6e-19 97.8 65 86.2
BcaC05g26886 Brassica carinata HOM05D002965 ORTHO05D011945 1.3e-18 97.1 69 81.2
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-18 97.1 74 75.7
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-18 97.1 65 83.1
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.7e-18 96.7 76 72.4
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 2.9e-18 95.9 86 68.6
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 8.4e-18 94.4 65 81.5
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 1.1e-17 94.0 72 80.6
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-17 94.0 68 77.9
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 1.4e-17 93.6 62 87.1
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 1.9e-17 93.2 65 80.0
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 3.2e-17 92.4 62 83.9
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 4.2e-17 92.0 81 70.4
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 4.2e-17 92.0 69 78.3
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 4.2e-17 92.0 58 87.9
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 4.2e-17 92.0 86 68.6
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 5.5e-17 91.7 76 71.1
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 9.3e-17 90.9 69 78.3
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 9.3e-17 90.9 86 66.3
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 9.3e-17 90.9 86 66.3
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-16 90.5 61 82.0
BcaC09g49585 Brassica carinata HOM05D008814 ORTHO05D010812 1.6e-16 90.1 68 75.0
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-16 89.7 68 79.4
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 2.7e-16 89.4 65 80.0
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 2.7e-16 89.4 62 82.3
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 2.7e-16 89.4 59 83.1
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-16 89.0 76 69.7
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 4.6e-16 88.6 63 81.0
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 4.6e-16 88.6 56 85.7
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 7.9e-16 87.8 61 82.0
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.3e-15 87.0 58 81.0
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-15 87.0 103 57.3
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 2.3e-15 86.3 59 79.7
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 3.0e-15 85.9 59 84.7
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 5.1e-15 85.1 72 75.0
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 1.9e-14 83.2 52 88.5
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 7.4e-14 81.3 61 77.0
Aa31csc464G90 Aethionema arabicum HOM05D002965 ORTHO05D011945 9.7e-14 80.9 69 69.6
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 1.4e-12 77.0 72 63.9
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.8e-12 76.6 65 67.7
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 5.3e-12 75.1 72 56.9
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 5.3e-12 75.1 72 56.9
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 6.9e-12 74.7 70 62.9
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 9.0e-12 74.3 54 77.8
Thhalv10023135m.g Eutrema salsugineum HOM05D002965 ORTHO05D010536 1.2e-11 73.9 70 67.1
CARHR283030 Cardamine hirsuta HOM05D002965 ORTHO05D011945 1.5e-11 73.6 106 50.9
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.5e-11 73.6 76 61.8
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 2.0e-11 73.2 68 61.8
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 2.0e-11 73.2 68 61.8
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 2.0e-11 73.2 67 67.2
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 2.0e-11 73.2 67 67.2
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 3.4e-11 72.4 49 83.7
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 4.5e-11 72.0 45 88.9
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 4.5e-11 72.0 72 61.1
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 7.7e-11 71.2 54 75.9
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 1.0e-10 70.9 47 85.1
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 1.7e-10 70.1 49 79.6
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 5.0e-10 68.6 65 63.1
HanXRQChr08g0236091 Helianthus annuus HOM05D006320 ORTHO05D007069 6.5e-10 68.2 73 60.3
HanXRQChr16g0504511 Helianthus annuus HOM05D006320 ORTHO05D007069 6.5e-10 68.2 73 60.3
HanXRQMTg0579331 Helianthus annuus HOM05D006320 ORTHO05D007069 6.5e-10 68.2 73 60.3
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 8.5e-10 67.8 53 73.6
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.5e-09 66.2 72 59.7
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 7.2e-09 64.7 75 52.0
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.2e-08 63.9 67 61.2
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 1.6e-08 63.5 40 85.0
ATMG00670 Arabidopsis thaliana HOM05D002965 ORTHO05D011945 2.7e-08 62.8 81 50.6
AL3G44420 Arabidopsis lyrata HOM05D002965 ORTHO05D010536 3.6e-08 62.4 53 62.3
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 3.6e-08 62.4 63 61.9
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 4.6e-08 62.0 47 72.3
Aa31csc1081G50 Aethionema arabicum HOM05D002965 ORTHO05D017245 6.1e-08 61.6 66 51.5
EL10Ac6g14143 Beta vulgaris HOM05D010007 ORTHO05D007069 1.4e-07 60.5 39 87.2
ClCG08G001280 Citrullus lanatus HOM05D006320 ORTHO05D007069 1.4e-07 60.5 38 86.8
Haze_27774 Corylus avellana HOM05D006320 ORTHO05D007069 1.4e-07 60.5 70 45.7
Haze_27775 Corylus avellana HOM05D006320 ORTHO05D007069 1.4e-07 60.5 70 45.7
TAR424G0002 Trochodendron aralioides HOM05D006320 ORTHO05D007069 1.4e-07 60.5 58 60.3
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 1.8e-07 60.1 40 80.0
Aa31csc464G80 Aethionema arabicum HOM05D010793 ORTHO05D007069 5.1e-07 58.5 33 90.9
Mapoly3785s0001 Marchantia polymorpha HOM05D006320 ORTHO05D007069 6.7e-07 58.2 70 52.9
Nitab4.5_0010033g0150 Nicotiana tabacum HOM05D006320 ORTHO05D007069 8.8e-07 57.8 43 76.7
Peaxi162Scf00446g00053 Petunia axillaris HOM05D006320 ORTHO05D007069 8.8e-07 57.8 33 90.9
BcaC08g43717 Brassica carinata HOM05D010793 ORTHO05D011945 7.4e-06 54.7 80 55.0
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 9.7e-06 54.3 41 75.6


User provided reference genes

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