Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p34770 Brassica napus HOM05D013555 ORTHO05D016062 2.4e-243 845.1 433 100.0
C01p34870 Brassica napus HOM05D013555 ORTHO05D016062 4.8e-236 820.8 434 97.5
BraSC48t46230Z Brassica rapa HOM05D013555 ORTHO05D016062 1.8e-134 483.4 260 95.8
BolC1t03445H Brassica oleracea HOM05D013555 ORTHO05D016062 1.5e-117 427.2 225 97.3
BraSC48t46318Z Brassica rapa HOM05D013555 ORTHO05D016062 2.7e-114 416.4 224 95.1
BolC1t03454H Brassica oleracea HOM05D013555 ORTHO05D016062 3.7e-63 246.5 120 100.0
BolC1t03453H Brassica oleracea HOM05D013555 ORTHO05D007974 9.5e-43 178.7 138 72.5
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.6e-42 177.9 114 77.2
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.6e-42 177.9 114 77.2
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.1e-41 175.3 114 77.2
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 1.5e-40 171.4 120 70.0
BcaB06g27872 Brassica carinata HOM05D013555 ORTHO05D016062 1.7e-39 167.9 95 95.8
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 2.2e-39 167.5 114 71.9
BolC1t03444H Brassica oleracea HOM05D006604 ORTHO05D007974 1.2e-37 161.8 81 98.8
Gorai.001G165800 Gossypium raimondii HOM05D013555 ORTHO05D016062 3.5e-37 160.2 117 71.8
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 5.1e-36 156.4 81 95.1
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 5.1e-36 156.4 81 95.1
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 5.1e-36 156.4 81 95.1
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 5.1e-36 156.4 81 95.1
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 5.1e-36 156.4 81 95.1
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 5.1e-36 156.4 81 95.1
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 1.8e-33 147.9 115 65.2
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.7e-31 141.4 76 89.5
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.7e-31 141.4 76 89.5
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 9.2e-30 135.6 115 60.0
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 1.2e-29 135.2 122 60.7
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 1.2e-29 135.2 122 60.7
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 5.1e-28 129.8 87 75.9
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 1.9e-27 127.9 79 78.5
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 9.6e-27 125.6 70 84.3
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 1.2e-26 125.2 79 77.2
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 3.6e-26 123.6 76 75.0
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 4.7e-26 123.2 108 59.3
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 6.2e-26 122.9 70 81.4
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 8.1e-26 122.5 94 68.1
SHI35295 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-25 122.1 72 80.6
SHI35759 Sapria himalayana HOM05D006604 ORTHO05D007974 2.4e-25 120.9 72 79.2
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 5.2e-25 119.8 76 73.7
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 8.9e-25 119.0 70 78.6
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 2.0e-24 117.9 72 79.2
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 7.6e-24 115.9 72 76.4
Nitab4.5_0002404g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.3e-23 115.2 70 75.7
SHI35478 Sapria himalayana HOM05D006604 ORTHO05D007974 2.9e-23 114.0 72 77.8
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 3.8e-23 113.6 72 75.0
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.9e-22 111.3 67 74.6
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 9.3e-22 109.0 70 77.1
Gohir.A08G086148 Gossypium hirsutum HOM05D013555 ORTHO05D016062 2.3e-20 104.4 66 74.2
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 1.1e-19 102.1 59 83.1
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 1.5e-19 101.7 57 82.5
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 4.3e-19 100.1 59 79.7
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 9.6e-19 99.0 59 78.0
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 1.3e-18 98.6 59 78.0
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 2.1e-18 97.8 86 57.0
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 2.1e-18 97.8 87 56.3
arahy.Tifrunner.gnm1.ann1.NC5V37 Arachis hypogaea HOM05D006604 ORTHO05D007974 2.1e-18 97.8 87 56.3
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 2.1e-18 97.8 87 56.3
GSVIVG01023423001 Vitis vinifera HOM05D006604 ORTHO05D007974 8.1e-18 95.9 57 77.2
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 1.1e-17 95.5 57 77.2
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 1.1e-17 95.5 72 65.3
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.4e-17 94.4 57 77.2
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.4e-17 94.4 57 77.2
Nn6g31985 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.4e-17 94.4 57 77.2
CARHR288260 Cardamine hirsuta HOM05D006604 ORTHO05D007974 4.0e-17 93.6 72 63.9
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 1.2e-16 92.0 58 72.4
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 3.4e-16 90.5 72 63.9
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.7e-15 88.2 77 58.4
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.7e-15 88.2 77 58.4
A04p09310 Brassica napus HOM05D013555 ORTHO05D016062 6.4e-15 86.3 40 97.5
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 8.4e-15 85.9 69 63.8
Medtr8g077470 Medicago truncatula HOM05D006604 ORTHO05D007974 3.9e-12 77.0 63 60.3
SHI33922 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-11 75.5 60 61.7
SHI35935 Sapria himalayana HOM05D006604 ORTHO05D007974 7.3e-11 72.8 43 76.7
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 9.6e-11 72.4 43 79.1
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 9.6e-11 72.4 43 79.1
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 9.6e-11 72.4 43 79.1
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 2.1e-10 71.2 43 76.7
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 2.8e-10 70.9 43 76.7
Glyma.01G103450 Glycine max HOM05D006604 ORTHO05D007974 9.0e-09 65.9 43 72.1
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 2.6e-08 64.3 35 77.1
MELO3C034885.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.6e-08 64.3 43 72.1
SHI51349 Sapria himalayana HOM05D006604 ORTHO05D007974 2.6e-08 64.3 35 80.0
Eucgr.D01303 Eucalyptus grandis HOM05D006604 ORTHO05D007974 1.7e-07 61.6 33 75.8
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.4e-06 57.8 71 47.9
SHI01303 Sapria himalayana HOM05D006604 ORTHO05D007974 2.4e-06 57.8 43 67.4


User provided reference genes

Program Settings