Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 8.6e-173 610.1 290 100.0
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 5.2e-162 574.3 306 91.5
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 4.7e-139 498.0 290 85.2
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 2.2e-128 462.6 237 93.2
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.9e-111 406.4 206 93.2
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-108 397.1 239 82.4
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-92 344.0 172 94.2
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-92 344.0 172 94.2
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 4.4e-92 342.0 172 93.6
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-89 333.6 176 91.5
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-89 333.6 176 91.5
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-89 333.6 176 91.5
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 4.5e-89 332.0 165 94.5
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.8e-88 328.9 165 93.9
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.5e-88 328.2 176 89.8
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-87 327.4 192 84.9
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-87 327.4 192 84.9
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 5.5e-87 325.1 176 89.2
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 4.7e-86 322.0 176 88.1
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 4.7e-86 322.0 176 88.1
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 7.9e-86 321.2 176 88.1
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 7.9e-86 321.2 176 88.1
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 7.9e-86 321.2 176 88.1
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 7.9e-86 321.2 176 88.1
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 2.3e-85 319.7 176 88.1
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 3.0e-85 319.3 176 87.5
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 5.2e-85 318.5 174 88.5
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 1.5e-84 317.0 176 86.9
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.5e-84 317.0 179 84.9
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 3.3e-84 315.8 176 85.8
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.3e-84 315.8 235 69.4
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 4.4e-84 315.5 176 86.9
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.8e-83 312.8 176 86.9
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.8e-83 312.8 176 86.9
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 6.3e-83 311.6 176 85.8
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 8.2e-83 311.2 178 85.4
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.4e-82 310.5 176 85.8
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.4e-82 310.5 176 85.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.4e-82 310.5 176 85.8
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.8e-82 310.1 176 85.8
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.0e-82 308.1 177 86.4
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.2e-81 307.4 207 76.3
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 2.6e-81 306.2 195 78.5
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 5.9e-81 305.1 176 85.2
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-80 303.1 172 85.5
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.9e-80 302.8 176 83.5
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.1e-79 300.8 174 85.1
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.1e-79 300.8 174 85.1
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 1.5e-79 300.4 176 84.1
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 4.2e-79 298.9 164 87.2
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 7.2e-79 298.1 179 80.4
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 7.2e-79 298.1 179 80.4
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 7.2e-79 298.1 179 80.4
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 7.2e-79 298.1 179 80.4
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 7.2e-79 298.1 179 80.4
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 7.2e-79 298.1 179 80.4
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 8.0e-78 294.7 170 85.3
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 6.7e-77 291.6 176 80.1
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 8.8e-77 291.2 144 93.8
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-74 284.3 175 81.7
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 5.9e-73 278.5 172 77.9
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 9.4e-71 271.2 161 82.0
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-68 263.5 176 76.1
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.8e-67 259.6 209 63.6
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.7e-67 259.2 177 76.3
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 5.4e-66 255.4 129 92.2
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.0e-65 253.4 176 73.9
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 3.5e-65 252.7 177 73.4
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.5e-65 252.7 177 73.4
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 2.5e-63 246.5 154 77.9
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 9.5e-63 244.6 154 78.6
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 2.8e-62 243.0 133 88.7
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 4.7e-62 242.3 154 76.6
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 6.1e-62 241.9 171 73.1
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 8.8e-61 238.0 177 70.6
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 1.2e-60 237.7 129 86.0
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-55 220.7 109 95.4
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.5e-55 219.9 129 82.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 4.3e-55 219.2 128 82.0
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 1.6e-54 217.2 175 63.4
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.6e-54 216.1 117 85.5
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.8e-53 213.8 225 54.2
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-48 197.6 106 88.7
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 3.3e-47 193.0 90 95.6
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 6.2e-46 188.7 176 60.2
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 4.0e-45 186.0 103 88.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.9e-45 184.9 176 59.1
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-43 180.6 88 100.0
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 9.2e-42 174.9 92 93.5
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 6.0e-41 172.2 98 76.5
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-39 167.5 141 60.3
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 2.5e-39 166.8 93 90.3
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 2.1e-38 163.7 89 84.3
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 1.4e-34 151.0 92 85.9
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 2.3e-32 143.7 72 91.7
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.3e-31 138.7 99 70.7
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 6.2e-30 135.6 72 91.7
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 6.2e-30 135.6 67 92.5
BraSC48t46350Z Brassica rapa HOM05D003783 ORTHO05D004568 6.8e-29 132.1 63 96.8
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 4.1e-26 122.9 77 75.3
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 5.4e-26 122.5 114 57.9
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 2.7e-25 120.2 66 87.9
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.5e-25 119.8 79 81.0
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 9.9e-20 101.7 47 89.4
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 1.7e-19 100.9 62 74.2
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 4.9e-19 99.4 117 50.4
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.4e-19 99.0 64 68.8
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.6e-17 94.4 49 89.8
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.1e-16 89.4 104 50.0
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 2.8e-14 83.6 51 66.7
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.4e-13 80.5 74 55.4
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 3.1e-13 80.1 45 84.4
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 4.0e-13 79.7 46 82.6
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 4.5e-12 76.3 84 48.8
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 1.1e-10 71.6 38 86.8
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.9e-10 70.9 44 70.5
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.7e-09 67.0 37 78.4
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 1.0e-08 65.1 42 69.0
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 1.8e-08 64.3 50 56.0
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-06 56.2 36 75.0


User provided reference genes

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