Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 6.2e-99 364.0 167 100.0
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 3.1e-98 361.7 167 99.4
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 3.4e-65 251.9 165 76.4
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 2.1e-62 242.7 192 67.7
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 2.1e-62 242.7 192 67.7
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 2.1e-62 242.7 192 67.7
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 2.7e-62 242.3 192 67.7
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 2.7e-62 242.3 192 67.7
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 4.6e-62 241.5 192 67.2
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 2.3e-61 239.2 192 66.7
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 1.1e-60 236.9 192 66.1
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 1.9e-60 236.1 192 66.1
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 1.9e-60 236.1 192 66.1
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 2.5e-60 235.7 192 66.1
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 7.4e-60 234.2 191 66.0
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 7.4e-60 234.2 191 66.0
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 9.6e-60 233.8 191 65.4
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 9.6e-60 233.8 191 65.4
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 9.6e-60 233.8 191 65.4
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.6e-59 233.0 192 65.1
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 1.6e-59 233.0 199 63.8
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 2.1e-59 232.6 192 65.6
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 6.2e-59 231.1 192 64.6
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 6.2e-59 231.1 192 65.1
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 1.1e-58 230.3 190 65.8
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 1.1e-58 230.3 191 64.9
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 4.0e-58 228.4 192 65.6
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 4.0e-58 228.4 192 65.6
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.2e-57 226.9 189 65.1
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 2.0e-57 226.1 192 64.1
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 7.6e-57 224.2 189 64.0
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 7.6e-57 224.2 192 64.6
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 7.6e-57 224.2 192 64.1
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.8e-56 221.9 189 64.6
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 8.4e-56 220.7 192 63.5
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.2e-55 218.8 185 64.9
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 5.5e-55 218.0 190 63.2
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 1.5e-52 209.9 188 60.1
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 3.3e-52 208.8 132 80.3
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 5.6e-52 208.0 180 63.9
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 1.3e-51 206.8 187 61.0
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 1.3e-51 206.8 187 61.0
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 1.6e-51 206.5 189 61.4
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.8e-51 205.7 132 79.5
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.8e-51 205.7 132 79.5
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 6.2e-51 204.5 166 63.9
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 8.2e-51 204.1 132 78.8
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.1e-50 203.8 132 78.8
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.4e-50 203.4 132 78.8
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.4e-50 203.4 132 78.8
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.8e-50 203.0 132 78.8
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 1.8e-50 203.0 132 78.0
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 2.4e-50 202.6 132 78.8
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 2.4e-50 202.6 132 78.8
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.4e-50 202.6 132 78.8
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 3.1e-50 202.2 132 78.0
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 3.1e-50 202.2 132 78.0
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 4.0e-50 201.8 129 79.1
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 1.5e-49 199.9 130 78.5
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.0e-48 197.2 130 77.7
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-48 196.1 132 76.5
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 4.9e-48 194.9 111 87.4
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 6.5e-48 194.5 132 76.5
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 8.4e-48 194.1 128 77.3
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 1.4e-47 193.4 129 76.0
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 1.4e-47 193.4 132 75.8
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-47 193.4 132 75.8
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 5.5e-47 191.4 150 68.0
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 7.1e-47 191.0 129 76.0
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 6.0e-46 188.0 131 74.8
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-45 184.9 132 72.7
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-45 184.9 153 66.0
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-45 184.9 153 66.0
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 8.7e-45 184.1 147 67.3
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.5e-44 183.3 180 57.2
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 7.4e-44 181.0 129 72.1
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-43 178.7 148 64.9
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 6.3e-43 177.9 166 60.2
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 6.9e-42 174.5 83 97.6
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-41 173.3 132 68.9
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.4e-41 172.2 130 70.8
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 5.9e-41 171.4 83 96.4
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 5.9e-41 171.4 83 96.4
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 1.3e-40 170.2 83 95.2
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-40 170.2 137 66.4
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 5.0e-40 168.3 83 95.2
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 6.5e-40 167.9 168 56.5
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 6.5e-40 167.9 130 69.2
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 2.5e-39 166.0 81 95.1
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-39 165.6 126 69.8
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-39 165.2 164 56.7
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 9.3e-39 164.1 162 57.4
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 9.3e-39 164.1 130 68.5
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 2.1e-38 162.9 102 79.4
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 2.7e-38 162.5 78 96.2
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-38 162.5 118 71.2
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 2.7e-38 162.5 78 96.2
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-36 156.4 165 55.2
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 2.8e-35 152.5 115 70.4
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-35 152.1 104 74.0
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 3.7e-35 152.1 83 85.5
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 4.8e-35 151.8 74 95.9
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 4.8e-35 151.8 74 95.9
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 3.1e-34 149.1 74 94.6
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 3.1e-34 149.1 74 94.6
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 3.1e-34 149.1 74 94.6
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 3.1e-34 149.1 74 94.6
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 6.9e-34 147.9 83 85.5
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 6.9e-34 147.9 83 85.5
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-33 147.1 78 87.2
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 2.0e-33 146.4 118 67.8
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-32 143.7 115 67.0
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 1.7e-32 143.3 71 93.0
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 5.0e-32 141.7 74 89.2
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 8.5e-32 141.0 87 78.2
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-31 140.6 74 89.2
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-31 139.4 72 88.9
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-31 139.4 74 89.2
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.2e-31 139.0 72 90.3
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-31 139.0 74 87.8
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-31 138.7 74 87.8
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 5.5e-31 138.3 143 51.0
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-30 136.0 72 88.9
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 4.7e-30 135.2 124 58.1
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 6.1e-30 134.8 70 90.0
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 6.1e-30 134.8 74 86.5
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 1.8e-29 133.3 68 91.2
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.9e-29 132.1 74 83.8
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-28 130.6 74 85.1
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-28 129.4 74 85.1
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-28 129.0 103 67.0
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 7.4e-28 127.9 71 85.9
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 4.8e-27 125.2 74 82.4
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.1e-26 124.0 67 85.1
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-25 119.4 93 68.8
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-25 119.4 155 49.0
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-24 116.3 92 67.4
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 7.2e-23 111.3 64 82.8
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 1.6e-22 110.2 165 44.2
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 6.1e-22 108.2 94 61.7
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.9e-21 105.5 123 48.8
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 6.7e-21 104.8 89 64.0
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 8.2e-19 97.8 119 47.1
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-18 96.7 110 50.9
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 2.4e-18 96.3 128 42.2
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.0e-17 93.2 49 87.8
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-17 92.4 69 68.1
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-17 92.4 95 58.9
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-17 92.4 95 58.9
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 2.2e-16 89.7 86 62.8
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 5.0e-16 88.6 58 75.9
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 5.5e-15 85.1 87 56.3
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 9.4e-15 84.3 44 90.9
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.3e-13 79.7 45 80.0
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-13 79.7 50 76.0
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 4.0e-13 79.0 105 49.5
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-12 76.6 86 51.2
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 7.5e-12 74.7 87 50.6
BraSC54t46360Z Brassica rapa HOM05D001560 ORTHO05D004675 6.3e-11 71.6 30 96.7
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-10 69.3 157 31.8
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 1.6e-09 67.0 35 85.7
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.0e-09 66.6 57 61.4
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-09 66.2 69 50.7
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 1.7e-08 63.5 64 59.4
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 8.5e-08 61.2 87 44.8
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 1.5e-07 60.5 59 54.2
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 3.2e-07 59.3 68 47.1
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.2e-07 59.3 63 54.0
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 4.2e-07 58.9 63 54.0
SHI42054 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-06 55.8 27 92.6
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 4.7e-06 55.5 29 86.2


User provided reference genes

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