Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.5e-43 178.3 87 100.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.5e-43 178.3 87 100.0
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 6.4e-39 163.7 87 94.3
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.3e-36 155.2 87 86.2
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 4.0e-33 144.4 126 65.1
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.0e-32 142.1 87 80.5
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.0e-28 129.8 87 75.9
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 3.3e-27 124.8 89 75.3
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 3.3e-27 124.8 89 75.3
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.1e-26 122.1 87 73.6
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.0e-20 101.7 56 80.4
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.1e-14 83.2 98 52.0
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.4e-14 82.8 82 48.8
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.4e-14 82.0 95 45.3
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 9.2e-14 80.1 93 45.2
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.1e-13 79.0 89 51.7
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.7e-13 78.6 89 44.9
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 4.6e-13 77.8 84 47.6
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.8e-13 77.0 88 42.0
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 7.8e-13 77.0 88 46.6
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-12 75.9 89 46.1
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.7e-12 75.9 91 46.2
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 3.0e-12 75.1 86 50.0
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.9e-12 74.7 89 44.9
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.1e-12 74.3 85 42.4
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 5.1e-12 74.3 94 43.6
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.5e-11 72.8 94 41.5
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-11 72.8 89 41.6
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.5e-11 72.8 94 43.6
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.5e-11 72.8 94 43.6
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.9e-11 72.4 89 43.8
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.5e-11 72.0 94 43.6
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.5e-11 72.0 94 42.6
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.5e-11 72.0 94 42.6
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.3e-11 71.6 88 40.9
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.3e-11 71.6 89 43.8
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.3e-11 71.6 82 43.9
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.3e-11 71.6 66 51.5
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 5.6e-11 70.9 52 59.6
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 5.6e-11 70.9 88 40.9
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.3e-11 70.5 95 45.3
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.3e-11 70.5 89 42.7
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.3e-11 70.5 60 53.3
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.6e-11 70.1 88 39.8
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.3e-10 69.7 89 44.9
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-10 69.7 88 39.8
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.3e-10 69.7 86 41.9
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.6e-10 69.3 87 43.7
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 2.1e-10 68.9 82 43.9
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.8e-10 68.6 89 41.6
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 2.8e-10 68.6 93 41.9
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.6e-10 68.2 90 41.1
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.6e-10 68.2 92 41.3
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 3.6e-10 68.2 90 40.0
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 3.6e-10 68.2 92 40.2
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 3.6e-10 68.2 92 45.7
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 3.6e-10 68.2 93 43.0
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 4.8e-10 67.8 90 43.3
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 6.2e-10 67.4 97 43.3
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 8.1e-10 67.0 97 44.3
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 8.1e-10 67.0 93 41.9
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.1e-09 66.6 92 42.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-09 66.6 92 39.1
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.1e-09 66.6 88 42.0
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.4e-09 66.2 84 46.4
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.4e-09 66.2 84 46.4
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.4e-09 66.2 80 45.0
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.8e-09 65.9 39 66.7
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-09 65.9 87 43.7
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.8e-09 65.9 94 40.4
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.8e-09 65.9 83 38.6
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-09 65.5 81 44.4
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-09 65.5 79 43.0
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.4e-09 65.5 92 39.1
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.4e-09 65.5 92 39.1
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 2.4e-09 65.5 92 40.2
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 3.1e-09 65.1 83 43.4
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.1e-09 65.1 96 41.7
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 4.0e-09 64.7 93 41.9
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 4.0e-09 64.7 92 39.1
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 5.3e-09 64.3 39 64.1
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 5.3e-09 64.3 39 66.7
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 6.9e-09 63.9 87 39.1
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 6.9e-09 63.9 100 39.0
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 6.9e-09 63.9 85 38.8
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 6.9e-09 63.9 88 40.9
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 9.0e-09 63.5 85 38.8
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 9.0e-09 63.5 57 50.9
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.2e-08 63.2 96 42.7
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-08 63.2 85 45.9
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-08 63.2 85 45.9
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.2e-08 63.2 83 42.2
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 1.2e-08 63.2 85 41.2
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.2e-08 63.2 87 43.7
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.5e-08 62.8 82 45.1
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.5e-08 62.8 100 38.0
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.5e-08 62.8 87 40.2
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.5e-08 62.8 87 40.2
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.5e-08 62.8 85 41.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.0e-08 62.4 97 43.3
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.0e-08 62.4 75 40.0
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.0e-08 62.4 86 45.3
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.6e-08 62.0 44 59.1
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.6e-08 62.0 87 35.6
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 2.6e-08 62.0 84 42.9
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 2.6e-08 62.0 88 44.3
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.4e-08 61.6 80 43.8
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 3.4e-08 61.6 83 43.4
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 3.4e-08 61.6 85 43.5
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.4e-08 61.6 72 45.8
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 3.4e-08 61.6 59 50.8
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.4e-08 61.6 77 46.8
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.4e-08 61.6 53 52.8
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 4.4e-08 61.2 57 50.9
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.4e-08 61.2 96 41.7
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.4e-08 61.2 93 39.8
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 5.8e-08 60.8 41 61.0
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 5.8e-08 60.8 87 37.9
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 7.6e-08 60.5 93 43.0
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 7.6e-08 60.5 85 40.0
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 9.9e-08 60.1 101 38.6
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 9.9e-08 60.1 41 65.9
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.3e-07 59.7 89 36.0
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-07 59.7 84 44.0
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.3e-07 59.7 87 42.5
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.3e-07 59.7 39 66.7
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.3e-07 59.7 90 38.9
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.3e-07 59.7 63 49.2
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.7e-07 59.3 93 43.0
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.7e-07 59.3 35 65.7
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 2.2e-07 58.9 85 41.2
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.2e-07 58.9 83 38.6
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 2.2e-07 58.9 85 42.4
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 2.2e-07 58.9 91 39.6
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.2e-07 58.9 93 35.5
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.9e-07 58.5 98 39.8
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 2.9e-07 58.5 98 39.8
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 2.9e-07 58.5 33 75.8
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 2.9e-07 58.5 33 75.8
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 2.9e-07 58.5 33 75.8
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 2.9e-07 58.5 33 75.8
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.9e-07 58.5 40 65.0
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.9e-07 58.5 39 66.7
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.8e-07 58.2 40 62.5
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 3.8e-07 58.2 89 43.8
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 3.8e-07 58.2 46 54.3
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 4.9e-07 57.8 92 40.2
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 4.9e-07 57.8 81 43.2
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 6.4e-07 57.4 39 61.5
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 6.4e-07 57.4 90 43.3
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 6.4e-07 57.4 95 36.8
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 6.4e-07 57.4 33 75.8
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 8.4e-07 57.0 82 43.9
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 1.1e-06 56.6 75 41.3
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.1e-06 56.6 47 59.6
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.4e-06 56.2 34 67.6
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.9e-06 55.8 93 36.6
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 1.9e-06 55.8 42 64.3
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.4e-06 55.5 81 45.7
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 3.2e-06 55.1 61 41.0
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 3.2e-06 55.1 39 56.4
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 3.2e-06 55.1 89 38.2
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.2e-06 54.7 86 34.9
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.2e-06 54.7 75 40.0
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 5.4e-06 54.3 96 42.7
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 5.4e-06 54.3 42 52.4
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.1e-06 53.9 87 39.1
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 7.1e-06 53.9 42 52.4
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.3e-06 53.5 78 38.5


User provided reference genes

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