Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p32930 Brassica napus HOM05D020862 ORTHO05D027434 6.7e-96 354.0 176 100.0
C02p55590 Brassica napus HOM05D020862 ORTHO05D027434 4.7e-89 331.3 167 98.8
BolC2t11615H Brassica oleracea HOM05D020862 ORTHO05D027434 4.7e-89 331.3 167 98.8
BcaC09g49787 Brassica carinata HOM05D020862 ORTHO05D027434 8.8e-72 273.9 153 92.8
BcaC09g50226 Brassica carinata HOM05D020862 ORTHO05D092000 4.7e-49 198.4 105 95.2
BcaC03g17579 Brassica carinata HOM05D020862 ORTHO05D000393 9.3e-21 104.4 56 94.6
BcaC08g46949 Brassica carinata HOM05D000095 ORTHO05D000393 1.6e-17 93.6 53 88.7
BcaC08g46906 Brassica carinata HOM05D000095 ORTHO05D000393 1.1e-16 90.9 54 88.9
BcaC08g46907 Brassica carinata HOM05D000095 ORTHO05D000393 1.1e-16 90.9 54 88.9
A07p40480 Brassica napus HOM05D000095 ORTHO05D000393 1.1e-16 90.9 54 88.9
C06p48850 Brassica napus HOM05D000095 ORTHO05D000393 1.1e-16 90.9 54 88.9
BolC6t39921H Brassica oleracea HOM05D000095 ORTHO05D000393 1.1e-16 90.9 54 88.9
BraA07t31591Z Brassica rapa HOM05D000095 ORTHO05D000393 1.1e-16 90.9 54 88.9
BcaC08g46913 Brassica carinata HOM05D000095 ORTHO05D000393 4.5e-15 85.5 54 85.2
Thhalv10018822m.g Eutrema salsugineum HOM05D000095 ORTHO05D000393 2.4e-13 79.7 60 75.0
CARHR068150 Cardamine hirsuta HOM05D000095 ORTHO05D000393 1.0e-11 74.3 56 69.6
A02p19580 Brassica napus HOM05D000095 ORTHO05D000393 1.8e-11 73.6 57 68.4
Sp5g29970 Schrenkiella parvula HOM05D000095 ORTHO05D000393 2.3e-11 73.2 60 70.0
BraA02t06995Z Brassica rapa HOM05D000095 ORTHO05D000393 3.0e-11 72.8 57 68.4
BcaB05g24873 Brassica carinata HOM05D000095 ORTHO05D000393 2.5e-10 69.7 57 63.2
BcaC03g15530 Brassica carinata HOM05D000095 ORTHO05D000393 9.6e-10 67.8 57 64.9
C02p32120 Brassica napus HOM05D000095 ORTHO05D000393 9.6e-10 67.8 57 64.9
BolC2t09248H Brassica oleracea HOM05D000095 ORTHO05D000393 9.6e-10 67.8 57 64.9
Carub.0002s2162 Capsella rubella HOM05D000095 ORTHO05D000393 2.8e-09 66.2 60 63.3
AL2G34720 Arabidopsis lyrata HOM05D000095 ORTHO05D000393 4.8e-09 65.5 60 63.3
BraA02t04956Z Brassica rapa HOM05D002851 ORTHO05D003084 1.8e-08 63.5 95 46.3
Thhalv10014240m.g Eutrema salsugineum HOM05D002851 ORTHO05D003084 4.0e-08 62.4 100 44.0
AL6G18860 Arabidopsis lyrata HOM05D002851 ORTHO05D003084 5.3e-08 62.0 30 96.7
AT5G08400 Arabidopsis thaliana HOM05D002851 ORTHO05D003084 5.3e-08 62.0 30 96.7
C03p04310 Brassica napus HOM05D002851 ORTHO05D003084 5.3e-08 62.0 30 96.7
BolC3t12964H Brassica oleracea HOM05D002851 ORTHO05D003084 5.3e-08 62.0 30 96.7
Sp6g34540 Schrenkiella parvula HOM05D002851 ORTHO05D003084 5.3e-08 62.0 30 96.7
AT1G74840 Arabidopsis thaliana HOM05D000095 ORTHO05D000393 9.0e-08 61.2 60 58.3
BcaB01g05600 Brassica carinata HOM05D002851 ORTHO05D003084 1.2e-07 60.8 30 93.3
A03p03830 Brassica napus HOM05D002851 ORTHO05D003084 1.2e-07 60.8 30 93.3
BraA03t09730Z Brassica rapa HOM05D002851 ORTHO05D003084 1.2e-07 60.8 30 93.3
Carub.0006s0731 Capsella rubella HOM05D002851 ORTHO05D003084 1.2e-07 60.8 30 93.3
CARHR204640 Cardamine hirsuta HOM05D002851 ORTHO05D003084 2.0e-07 60.1 30 93.3
Ciclev10015943m.g Citrus clementina HOM05D002851 ORTHO05D003084 3.4e-07 59.3 30 90.0
THA.LOC104808319 Tarenaya hassleriana HOM05D000095 ORTHO05D000393 3.4e-07 59.3 64 57.8
HPP92_021120 Vanilla planifolia HOM05D002851 ORTHO05D003084 3.4e-07 59.3 30 86.7
Aa31LG4G5050 Aethionema arabicum HOM05D000095 ORTHO05D000393 4.5e-07 58.9 65 61.5
Aa31LG3G18160 Aethionema arabicum HOM05D002851 ORTHO05D003084 5.8e-07 58.5 30 90.0
CANSAT78G1074 Cannabis sativa HOM05D002851 ORTHO05D003084 7.6e-07 58.2 30 90.0
TWI53G0312 Tripterygium wilfordii HOM05D002851 ORTHO05D003084 9.9e-07 57.8 30 86.7
Atru.chr11.15 Acer truncatum HOM05D002851 ORTHO05D003084 1.3e-06 57.4 30 86.7
Haze_17394 Corylus avellana HOM05D001168 ORTHO05D003084 1.3e-06 57.4 30 86.7
Glyma.03G000100 Glycine max HOM05D002851 ORTHO05D003084 1.3e-06 57.4 30 86.7
Glyma.19G000500 Glycine max HOM05D002851 ORTHO05D003084 1.3e-06 57.4 30 86.7
Manes.14G174550 Manihot esculenta HOM05D002851 ORTHO05D003084 1.3e-06 57.4 30 86.7
arahy.Tifrunner.gnm1.ann1.20K2MK Arachis hypogaea HOM05D002851 ORTHO05D003084 1.7e-06 57.0 30 86.7
arahy.Tifrunner.gnm1.ann1.AAP527 Arachis hypogaea HOM05D002851 ORTHO05D003084 1.7e-06 57.0 30 86.7
Prupe.1G352300 Prunus persica HOM05D002851 ORTHO05D003084 1.7e-06 57.0 30 86.7
PGR142G3147 Punica granatum HOM05D002851 ORTHO05D003084 1.7e-06 57.0 30 86.7
THA.LOC104818388 Tarenaya hassleriana HOM05D002851 ORTHO05D003084 1.7e-06 57.0 30 83.3
BcaB07g32127 Brassica carinata HOM05D000032 ORTHO05D006669 2.2e-06 56.6 55 60.0
BcaC05g26047 Brassica carinata HOM05D000032 ORTHO05D006669 2.2e-06 56.6 40 72.5
COL.COLO4_08314 Corchorus olitorius HOM05D002851 ORTHO05D003084 2.2e-06 56.6 30 83.3
MBI06_g37979_MAGBIO Magnolia biondii HOM05D002851 ORTHO05D003084 2.2e-06 56.6 30 83.3
MD16G1005400 Malus domestica HOM05D002851 ORTHO05D003084 2.2e-06 56.6 30 86.7
GSVIVG01034332001 Vitis vinifera HOM05D002851 ORTHO05D003084 2.2e-06 56.6 30 83.3
FvH4_7g04330 Fragaria vesca HOM05D002851 ORTHO05D003084 2.9e-06 56.2 30 83.3
FAN01G1618 Fragaria x ananassa HOM05D002851 ORTHO05D003084 2.9e-06 56.2 30 83.3
Phvul.004G000700 Phaseolus vulgaris HOM05D002851 ORTHO05D003084 2.9e-06 56.2 30 80.0
RcHm_v2.0_Chr4g0447251 Rosa chinensis HOM05D002851 ORTHO05D003084 2.9e-06 56.2 30 83.3
Actinidia35983 Actinidia chinensis HOM05D002851 ORTHO05D003084 3.8e-06 55.8 30 80.0
ATR0124G028 Amborella trichopoda HOM05D002851 ORTHO05D003084 3.8e-06 55.8 30 86.7
Eucgr.G02618 Eucalyptus grandis HOM05D002851 ORTHO05D003084 3.8e-06 55.8 30 83.3
Lj8C603G2 Lonicera japonica HOM05D002851 ORTHO05D003084 3.8e-06 55.8 30 83.3
SGA_v2.0_scaffold120G32962 Striga asiatica HOM05D002851 ORTHO05D003084 3.8e-06 55.8 30 83.3
THA.LOC104809231 Tarenaya hassleriana HOM05D000095 ORTHO05D000393 3.8e-06 55.8 68 54.4
TAR371G0890 Trochodendron aralioides HOM05D002851 ORTHO05D003084 3.8e-06 55.8 30 83.3
EL10As14g24083 Beta vulgaris HOM05D002851 ORTHO05D003084 4.9e-06 55.5 30 86.7
PSO063G6795 Papaver somniferum HOM05D002851 ORTHO05D003084 4.9e-06 55.5 30 83.3
PSO782G2630 Papaver somniferum HOM05D002851 ORTHO05D003084 4.9e-06 55.5 30 83.3
Solyc08g081080.3 Solanum lycopersicum HOM05D002851 ORTHO05D003084 4.9e-06 55.5 30 86.7
Sopen08g029400 Solanum pennellii HOM05D002851 ORTHO05D003084 4.9e-06 55.5 30 86.7
PGSC0003DMG400012207 Solanum tuberosum HOM05D002851 ORTHO05D003084 4.9e-06 55.5 30 86.7
Thecc.02G150700 Theobroma cacao HOM05D002851 ORTHO05D003084 4.9e-06 55.5 30 83.3
CSS0046292 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 6.4e-06 55.1 30 80.0
Cpa.g.sc774.2 Carica papaya HOM05D002851 ORTHO05D003084 6.4e-06 55.1 30 83.3
Gohir.A03G168600 Gossypium hirsutum HOM05D002851 ORTHO05D003084 6.4e-06 55.1 30 80.0
Gohir.D02G191800 Gossypium hirsutum HOM05D002851 ORTHO05D003084 6.4e-06 55.1 30 80.0
Gorai.005G214600 Gossypium raimondii HOM05D002851 ORTHO05D003084 6.4e-06 55.1 30 80.0
Hma1.2p1_0886F.1_g232720 Hydrangea macrophylla HOM05D002851 ORTHO05D003084 6.4e-06 55.1 30 83.3
Lj2g0024534 Lotus japonicus HOM05D002851 ORTHO05D003084 6.4e-06 55.1 30 80.0
unitig_92.g28213 Utricularia gibba HOM05D002851 ORTHO05D003084 6.4e-06 55.1 30 80.0
Zm00001eb190770 Zea mays HOM05D002851 ORTHO05D003084 6.4e-06 55.1 77 40.3
Sabra10G0198700 Salix brachista HOM05D002851 ORTHO05D003084 8.4e-06 54.7 78 43.6
THA.LOC104813861 Tarenaya hassleriana HOM05D000095 ORTHO05D000393 8.4e-06 54.7 64 54.7


User provided reference genes

Program Settings