Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 1.0e-38 162.9 81 100.0
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 2.3e-38 161.8 81 98.8
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 1.5e-37 159.1 81 97.5
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 2.8e-33 144.8 82 90.2
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 7.8e-31 136.7 82 86.6
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 1.1e-29 132.9 81 86.4
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 2.5e-29 131.7 82 82.9
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 1.6e-28 129.0 76 86.8
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 1.6e-28 129.0 76 86.8
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 7.8e-23 110.2 74 75.7
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.1e-19 99.8 82 64.6
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 2.3e-19 98.6 82 65.9
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 6.8e-19 97.1 73 69.9
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 1.2e-18 96.3 82 64.6
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 1.5e-18 95.9 78 67.9
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 2.6e-18 95.1 77 67.5
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 3.4e-18 94.7 75 68.0
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 3.4e-18 94.7 72 61.1
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 7.5e-18 93.6 81 63.0
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 1.3e-17 92.8 81 61.7
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 2.9e-17 91.7 74 66.2
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 3.7e-17 91.3 89 60.7
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 4.9e-17 90.9 70 68.6
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 6.4e-17 90.5 85 60.0
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 8.3e-17 90.1 79 63.3
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 1.1e-16 89.7 72 65.3
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 1.4e-16 89.4 74 64.9
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 1.4e-16 89.4 69 66.7
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 3.2e-16 88.2 69 69.6
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 3.2e-16 88.2 82 59.8
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 7.0e-16 87.0 77 64.9
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 9.2e-16 86.7 82 59.8
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 1.2e-15 86.3 75 68.0
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 2.0e-15 85.5 79 58.2
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 2.0e-15 85.5 61 70.5
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 2.0e-15 85.5 61 70.5
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 3.5e-15 84.7 77 58.4
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 3.5e-15 84.7 74 66.2
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 3.5e-15 84.7 74 62.2
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 3.5e-15 84.7 70 61.4
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 1.3e-14 82.8 74 62.2
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 1.7e-14 82.4 74 60.8
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 1.7e-14 82.4 71 63.4
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 1.7e-14 82.4 81 58.0
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 3.0e-14 81.6 71 64.8
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 5.0e-14 80.9 74 59.5
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 1.1e-13 79.7 77 51.9
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 1.5e-13 79.3 71 54.9
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 1.9e-13 79.0 74 59.5
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 3.3e-13 78.2 82 56.1
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 4.3e-13 77.8 78 56.4
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 4.3e-13 77.8 74 56.8
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 5.6e-13 77.4 75 61.3
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 5.6e-13 77.4 73 54.8
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 5.6e-13 77.4 62 62.9
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 7.3e-13 77.0 72 55.6
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 7.3e-13 77.0 68 58.8
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 7.3e-13 77.0 68 58.8
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 1.2e-12 76.3 79 60.8
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 2.1e-12 75.5 67 65.7
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 2.8e-12 75.1 71 54.9
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 3.6e-12 74.7 69 56.5
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 3.6e-12 74.7 71 59.2
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 6.2e-12 73.9 74 62.2
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 8.1e-12 73.6 77 55.8
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 2.3e-11 72.0 45 73.3
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 4.4e-10 67.8 55 70.9
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 1.3e-09 66.2 71 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 5.4e-08 60.8 61 50.8
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 7.1e-08 60.5 50 62.0
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 2.7e-07 58.5 45 68.9


User provided reference genes

Program Settings