Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 1.9e-58 229.2 136 100.0
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 1.9e-58 229.2 136 100.0
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 5.6e-58 227.6 136 97.8
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 9.0e-56 220.3 136 91.9
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 2.6e-55 218.8 136 91.2
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 1.1e-53 213.4 136 94.1
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 3.2e-45 185.3 136 80.9
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 1.0e-43 180.3 138 86.2
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 5.6e-42 174.5 138 76.8
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 2.1e-41 172.6 137 62.8
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.1e-40 170.2 137 73.0
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 1.1e-40 170.2 138 78.3
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 1.8e-40 169.5 137 81.0
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 4.0e-40 168.3 139 80.6
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 3.8e-38 161.8 140 67.9
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 1.2e-36 156.8 141 60.3
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 4.3e-34 148.3 140 73.6
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 5.6e-34 147.9 140 69.3
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 8.2e-33 144.1 137 59.1
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 9.0e-32 140.6 140 68.6
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 5.8e-31 137.9 141 68.8
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 1.6e-28 129.8 94 85.1
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 6.0e-28 127.9 141 56.7
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 6.0e-28 127.9 141 56.7
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.4e-24 115.9 136 58.1
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 2.2e-22 109.4 136 61.8
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 1.4e-21 106.7 136 50.7
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.7e-20 102.4 143 49.0
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 4.6e-20 101.7 147 42.2
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 4.6e-20 101.7 136 50.7
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 6.1e-20 101.3 136 49.3
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 6.1e-20 101.3 135 44.4
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 7.9e-20 100.9 139 52.5
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.4e-19 100.1 136 43.4
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 1.4e-19 100.1 91 74.7
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.4e-19 100.1 91 74.7
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 1.4e-19 100.1 139 59.7
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.8e-19 99.8 89 61.8
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 1.8e-19 99.8 136 52.9
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 1.8e-19 99.8 136 52.9
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.3e-19 99.4 91 73.6
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 2.3e-19 99.4 91 69.2
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 3.0e-19 99.0 139 49.6
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 5.1e-19 98.2 139 46.0
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 5.1e-19 98.2 89 70.8
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 6.7e-19 97.8 98 64.3
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 8.8e-19 97.4 138 55.8
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.1e-18 97.1 141 44.7
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 1.5e-18 96.7 141 48.2
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 1.9e-18 96.3 137 54.0
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 1.9e-18 96.3 140 57.9
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 2.5e-18 95.9 137 57.7
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 3.3e-18 95.5 143 46.2
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 4.3e-18 95.1 89 68.5
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 5.7e-18 94.7 140 50.0
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 5.7e-18 94.7 97 50.5
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 5.7e-18 94.7 145 51.7
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 7.4e-18 94.4 136 50.7
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 9.7e-18 94.0 138 43.5
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 1.7e-17 93.2 139 39.6
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 1.7e-17 93.2 143 50.3
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.8e-17 92.4 144 44.4
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 2.8e-17 92.4 144 44.4
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 2.8e-17 92.4 91 49.5
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 3.7e-17 92.0 104 64.4
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 3.7e-17 92.0 98 55.1
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.7e-17 92.0 141 50.4
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.7e-17 92.0 91 69.2
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 4.8e-17 91.7 143 39.9
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 4.8e-17 91.7 142 50.7
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 6.3e-17 91.3 140 45.7
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 6.3e-17 91.3 145 53.1
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 8.2e-17 90.9 141 41.8
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-16 90.5 143 42.0
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 1.1e-16 90.5 139 40.3
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.4e-16 90.1 88 64.8
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.4e-16 90.1 142 43.0
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 1.4e-16 90.1 145 40.7
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 1.4e-16 90.1 101 59.4
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 4.1e-16 88.6 141 45.4
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.1e-16 88.6 139 38.8
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 4.1e-16 88.6 139 38.8
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 4.1e-16 88.6 139 42.4
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 5.3e-16 88.2 99 48.5
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 6.9e-16 87.8 138 44.2
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 6.9e-16 87.8 141 50.4
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.9e-16 87.8 97 48.5
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.9e-16 87.8 97 48.5
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 6.9e-16 87.8 141 44.0
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 9.1e-16 87.4 141 50.4
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 1.5e-15 86.7 154 35.7
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 2.0e-15 86.3 138 43.5
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 2.0e-15 86.3 131 42.7
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.0e-15 86.3 97 50.5
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 2.6e-15 85.9 91 48.4
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 2.6e-15 85.9 139 49.6
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 2.6e-15 85.9 98 66.3
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 4.5e-15 85.1 82 53.7
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 5.9e-15 84.7 91 52.7
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 7.7e-15 84.3 148 54.7
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 7.7e-15 84.3 91 70.3
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 1.0e-14 84.0 142 37.3
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.2e-14 82.8 58 75.9
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 2.9e-14 82.4 93 68.8
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 3.8e-14 82.0 94 60.6
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 3.8e-14 82.0 138 44.2
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 6.5e-14 81.3 85 65.9
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 6.5e-14 81.3 82 50.0
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.5e-14 80.9 94 45.7
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 8.5e-14 80.9 80 57.5
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 8.5e-14 80.9 138 39.9
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.1e-13 80.5 128 53.9
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 1.4e-13 80.1 95 66.3
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 1.4e-13 80.1 143 41.3
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 1.4e-13 80.1 93 63.4
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.9e-13 79.7 143 39.2
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 2.5e-13 79.3 96 56.2
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 3.2e-13 79.0 89 44.9
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 3.2e-13 79.0 85 67.1
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 3.2e-13 79.0 140 49.3
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 3.2e-13 79.0 110 47.3
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.2e-13 78.6 92 60.9
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 4.2e-13 78.6 80 50.0
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 5.5e-13 78.2 135 51.1
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 7.2e-13 77.8 89 44.9
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 7.2e-13 77.8 99 58.6
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 1.6e-12 76.6 80 46.2
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.6e-12 76.6 92 62.0
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.1e-12 76.3 89 49.4
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 2.7e-12 75.9 116 40.5
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 2.7e-12 75.9 121 44.6
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 3.6e-12 75.5 135 39.3
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 3.6e-12 75.5 90 63.3
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 3.6e-12 75.5 74 48.6
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 3.6e-12 75.5 81 69.1
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 4.7e-12 75.1 93 45.2
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 4.7e-12 75.1 100 64.0
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 4.7e-12 75.1 80 71.2
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 6.1e-12 74.7 138 46.4
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 6.1e-12 74.7 80 70.0
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 6.1e-12 74.7 154 40.9
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 6.1e-12 74.7 90 55.6
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 7.9e-12 74.3 82 58.5
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.0e-11 73.9 82 56.1
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.0e-11 73.9 129 39.5
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.4e-11 73.6 80 46.2
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.4e-11 73.6 80 46.2
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.4e-11 73.6 118 52.5
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.4e-11 73.6 81 54.3
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 1.4e-11 73.6 78 57.7
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.4e-11 73.6 141 46.8
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 2.3e-11 72.8 136 51.5
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 3.9e-11 72.0 133 39.1
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 6.7e-11 71.2 91 48.4
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 6.7e-11 71.2 77 53.2
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 6.7e-11 71.2 82 58.5
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 8.8e-11 70.9 68 51.5
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-10 70.5 90 47.8
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 1.1e-10 70.5 75 52.0
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.5e-10 70.1 83 61.4
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 2.6e-10 69.3 107 38.3
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 3.3e-10 68.9 89 62.9
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 4.4e-10 68.6 122 49.2
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 7.4e-10 67.8 69 46.4
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.3e-09 67.0 68 48.5
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 1.7e-09 66.6 95 41.1
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 2.8e-09 65.9 87 59.8
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.8e-09 65.9 87 59.8
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.8e-09 65.9 87 59.8
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 2.8e-09 65.9 88 59.1
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 3.7e-09 65.5 113 36.3
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 4.8e-09 65.1 61 59.0
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 6.3e-09 64.7 81 48.1
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 2.0e-07 59.7 121 35.5
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 2.6e-07 59.3 117 35.0
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 7.7e-07 57.8 69 44.9


User provided reference genes

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