Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49825 Brassica carinata HOM05D006123 ORTHO05D007578 6.4e-91 337.4 173 100.0
C01p32570 Brassica napus HOM05D006123 ORTHO05D007578 6.4e-91 337.4 173 100.0
BolC4t24736H Brassica oleracea HOM05D006123 ORTHO05D007578 1.2e-89 333.2 173 98.8
BcaC09g49821 Brassica carinata HOM05D006123 ORTHO05D007578 1.1e-61 240.4 123 99.2
C08p27270 Brassica napus HOM05D006123 ORTHO05D007578 1.1e-29 134.0 319 37.3
BolC8t50344H Brassica oleracea HOM05D006123 ORTHO05D007578 1.1e-29 134.0 319 37.3
BcaB01g00454 Brassica carinata HOM05D006123 ORTHO05D007578 1.2e-28 130.6 319 36.7
BcaB01g00394 Brassica carinata HOM05D006123 ORTHO05D007578 1.5e-28 130.2 318 37.1
A09p45080 Brassica napus HOM05D006123 ORTHO05D007578 2.2e-27 126.3 319 35.7
Sp5g10290 Schrenkiella parvula HOM05D006123 ORTHO05D007578 2.2e-27 126.3 318 35.2
BraA09t39969Z Brassica rapa HOM05D006123 ORTHO05D007578 6.5e-27 124.8 319 35.4
BcaC09g49822 Brassica carinata HOM05D006123 ORTHO05D007578 2.1e-25 119.8 59 98.3
CARHR161640 Cardamine hirsuta HOM05D006123 ORTHO05D007578 8.0e-25 117.9 72 83.3
Carub.0005s1833 Capsella rubella HOM05D006123 ORTHO05D007578 6.7e-24 114.8 72 83.3
Thhalv10010449m.g Eutrema salsugineum HOM05D006123 ORTHO05D007578 1.1e-23 114.0 72 81.9
AL5G32490 Arabidopsis lyrata HOM05D006123 ORTHO05D007578 2.6e-23 112.8 72 81.9
Aa31LG10G7030 Aethionema arabicum HOM05D006123 ORTHO05D007578 4.4e-23 112.1 72 80.6
AT3G51980 Arabidopsis thaliana HOM05D006123 ORTHO05D007578 9.7e-23 110.9 72 80.6
THA.LOC104823032 Tarenaya hassleriana HOM05D006123 ORTHO05D007578 1.9e-18 96.7 67 73.1
CiPaw.05G096700 Carya illinoinensis HOM05D006123 ORTHO05D007578 5.2e-16 88.6 69 62.3
Haze_12544 Corylus avellana HOM05D006123 ORTHO05D007578 2.6e-15 86.3 69 60.9
Atru.chr12.1487 Acer truncatum HOM05D006123 ORTHO05D007578 1.7e-14 83.6 67 58.2
Ciclev10028563m.g Citrus clementina HOM05D006123 ORTHO05D007578 1.7e-14 83.6 122 42.6
Manes.08G098100 Manihot esculenta HOM05D006123 ORTHO05D007578 2.8e-14 82.8 69 59.4
TAR374G1410 Trochodendron aralioides HOM05D006123 ORTHO05D007578 2.8e-14 82.8 310 28.1
CSS0017548 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 3.7e-14 82.4 67 61.2
CSS0037190 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 3.7e-14 82.4 67 61.2
Cpa.g.sc252.15 Carica papaya HOM05D006123 ORTHO05D007578 3.7e-14 82.4 71 56.3
QL03p046914 Quercus lobata HOM05D006123 ORTHO05D007578 4.8e-14 82.0 69 58.0
Thecc.01G233200 Theobroma cacao HOM05D006123 ORTHO05D007578 4.8e-14 82.0 69 60.9
Eucgr.B03575 Eucalyptus grandis HOM05D006123 ORTHO05D007578 6.3e-14 81.6 69 56.5
Sabra01G0050800 Salix brachista HOM05D006123 ORTHO05D007578 6.3e-14 81.6 69 56.5
Potri.001G072200 Populus trichocarpa HOM05D006123 ORTHO05D007578 8.3e-14 81.3 69 55.1
Gohir.D11G063700 Gossypium hirsutum HOM05D006123 ORTHO05D007578 1.1e-13 80.9 69 58.0
Gohir.A11G059600 Gossypium hirsutum HOM05D006123 ORTHO05D007578 2.4e-13 79.7 69 56.5
Gorai.007G068900 Gossypium raimondii HOM05D006123 ORTHO05D007578 2.4e-13 79.7 69 56.5
RcHm_v2.0_Chr4g0428181 Rosa chinensis HOM05D006123 ORTHO05D007578 2.4e-13 79.7 67 56.7
MD13G1135300 Malus domestica HOM05D006123 ORTHO05D007578 1.2e-12 77.4 169 34.3
TWI36G1213 Tripterygium wilfordii HOM05D006123 ORTHO05D007578 1.2e-12 77.4 69 52.2
FvH4_4g21990 Fragaria vesca HOM05D006123 ORTHO05D007578 1.6e-12 77.0 67 55.2
FAN07G1474 Fragaria x ananassa HOM05D006123 ORTHO05D007578 1.6e-12 77.0 67 55.2
AUR62007355 Chenopodium quinoa HOM05D006123 ORTHO05D007578 2.0e-12 76.6 67 56.7
AUR62018638 Chenopodium quinoa HOM05D006123 ORTHO05D007578 2.0e-12 76.6 121 41.3
Prupe.1G210000 Prunus persica HOM05D006123 ORTHO05D007578 2.0e-12 76.6 120 38.3
Sed0027865 Sechium edule HOM05D006123 ORTHO05D007578 3.5e-12 75.9 69 53.6
vmacro15977 Vaccinium macrocarpon HOM05D006123 ORTHO05D007578 3.5e-12 75.9 70 52.9
Duzib264G0674 Durio zibethinus HOM05D006123 ORTHO05D007578 4.5e-12 75.5 69 55.1
PGR102G0396 Punica granatum HOM05D006123 ORTHO05D007578 4.5e-12 75.5 69 53.6
TPR.G310 Trifolium pratense HOM05D006123 ORTHO05D007578 5.9e-12 75.1 67 56.7
GSVIVG01001139001 Vitis vinifera HOM05D006123 ORTHO05D007578 7.7e-12 74.7 69 52.2
Rhsim12G0090900 Rhododendron simsii HOM05D006123 ORTHO05D007578 1.0e-11 74.3 67 50.7
Lalb_Chr12g0202061 Lupinus albus HOM05D006123 ORTHO05D007578 1.3e-11 73.9 171 32.7
Lj3C1079T4 Lonicera japonica HOM05D006123 ORTHO05D007578 1.7e-11 73.6 67 55.2
MBI11_g04258_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 1.7e-11 73.6 67 55.2
EL10Ac5g12009 Beta vulgaris HOM05D006123 ORTHO05D007578 2.2e-11 73.2 67 52.2
Nn3g16171 Nelumbo nucifera HOM05D006123 ORTHO05D007578 2.2e-11 73.2 67 55.2
Dinv07617 Davidia involucrata HOM05D006123 ORTHO05D007578 2.9e-11 72.8 67 58.2
Hma1.2p1_0073F.1_g038620 Hydrangea macrophylla HOM05D006123 ORTHO05D007578 2.9e-11 72.8 67 52.2
Actinidia13519 Actinidia chinensis HOM05D006123 ORTHO05D007578 5.0e-11 72.0 67 55.2
Hund14375 Selenicereus undatus HOM05D006123 ORTHO05D007578 5.0e-11 72.0 67 52.2
Aqoxy6G00002 Aquilegia oxysepala HOM05D006123 ORTHO05D007578 6.5e-11 71.6 67 50.7
Psat5g111880 Pisum sativum HOM05D006123 ORTHO05D007578 6.5e-11 71.6 67 55.2
MBI07_g11054_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 8.5e-11 71.2 113 41.6
arahy.Tifrunner.gnm1.ann1.BTS312 Arachis hypogaea HOM05D006123 ORTHO05D007578 1.1e-10 70.9 67 55.2
Ca_16273_v3 Cicer arietinum L. HOM05D006123 ORTHO05D007578 1.1e-10 70.9 67 53.7
MELO3C022368.2 Cucumis melo HOM05D006123 ORTHO05D007578 1.5e-10 70.5 88 42.0
CsaV3_6G007640 Cucumis sativus L. HOM05D006123 ORTHO05D007578 1.5e-10 70.5 69 47.8
arahy.Tifrunner.gnm1.ann1.9L3MVK Arachis hypogaea HOM05D006123 ORTHO05D007578 1.9e-10 70.1 67 53.7
arahy.Tifrunner.gnm1.ann1.XG2HYZ Arachis hypogaea HOM05D006123 ORTHO05D007578 1.9e-10 70.1 67 53.7
ATR0582G035 Amborella trichopoda HOM05D006123 ORTHO05D007578 2.5e-10 69.7 67 50.7
CDE04G2001 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 3.2e-10 69.3 69 52.2
ClCG06G001650 Citrullus lanatus HOM05D006123 ORTHO05D007578 3.2e-10 69.3 69 49.3
Glyma.20G054400 Glycine max HOM05D006123 ORTHO05D007578 3.2e-10 69.3 120 40.0
Oeu036874.2 Olea europaea HOM05D006123 ORTHO05D007578 5.5e-10 68.6 67 50.7
Lj6g0015569 Lotus japonicus HOM05D006123 ORTHO05D007578 9.4e-10 67.8 67 52.2
Sc07g0008580 Simmondsia chinensis HOM05D006123 ORTHO05D007578 9.4e-10 67.8 67 49.3
VMungo0540G0877 Vigna mungo HOM05D006123 ORTHO05D007578 9.4e-10 67.8 101 40.6
CDE07G0286 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 2.7e-09 66.2 70 52.9
HanXRQChr16g0516431 Helianthus annuus HOM05D006123 ORTHO05D007578 3.6e-09 65.9 68 50.0
Nitab4.5_0002113g0090 Nicotiana tabacum HOM05D006123 ORTHO05D007578 6.1e-09 65.1 67 47.8
Ah.07g200930 Amaranthus hybridus HOM05D006123 ORTHO05D007578 8.0e-09 64.7 67 44.8
Cc11_g14840 Coffea canephora HOM05D006123 ORTHO05D007578 8.0e-09 64.7 64 46.9
Medtr3g080080 Medicago truncatula HOM05D006123 ORTHO05D007578 8.0e-09 64.7 67 49.3
Lsat_1_v5_gn_4_1741 Lactuca sativa HOM05D006123 ORTHO05D007578 1.0e-08 64.3 67 46.3
SalBow2G0521 Salvia bowleyana HOM05D006123 ORTHO05D007578 1.0e-08 64.3 67 44.8
ECA234G2504 Erigeron canadensis HOM05D006123 ORTHO05D007578 1.8e-08 63.5 67 49.3
Migut.K01149 Erythranthe guttata HOM05D006123 ORTHO05D007578 3.0e-08 62.8 67 46.3
Nitab4.5_0007261g0070 Nicotiana tabacum HOM05D006123 ORTHO05D007578 4.0e-08 62.4 67 46.3
HPP92_007055 Vanilla planifolia HOM05D006123 ORTHO05D007578 5.2e-08 62.0 68 51.5
SEGI_37385 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 7.5e-07 58.2 67 41.8
HPP92_025319 Vanilla planifolia HOM05D006123 ORTHO05D007578 9.8e-07 57.8 70 47.1
PSO478G0970 Papaver somniferum HOM05D006123 ORTHO05D007578 1.3e-06 57.4 67 43.3
SEGI_34276 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 1.7e-06 57.0 62 50.0
DCAR_023486 Daucus carota HOM05D006123 ORTHO05D007578 2.8e-06 56.2 67 41.8
COL.COLO4_15650 Corchorus olitorius HOM05D006123 ORTHO05D007578 4.9e-06 55.5 135 31.1


User provided reference genes

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