Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49875 Brassica carinata HOM05D006563 ORTHO05D008154 3.3e-127 458.4 227 100.0
C01p32250 Brassica napus HOM05D006563 ORTHO05D008154 3.3e-127 458.4 227 100.0
A01p25680 Brassica napus HOM05D006563 ORTHO05D008154 4.3e-127 458.0 227 99.6
BraA01t02447Z Brassica rapa HOM05D006563 ORTHO05D008154 4.3e-127 458.0 227 99.6
BolC1t03129H Brassica oleracea HOM05D006563 ORTHO05D008154 4.7e-126 454.5 227 99.1
BcaB05g23009 Brassica carinata HOM05D006563 ORTHO05D008154 5.8e-124 447.6 227 96.5
Sp5g13440 Schrenkiella parvula HOM05D006563 ORTHO05D008154 7.8e-121 437.2 227 93.8
Thhalv10010696m.g Eutrema salsugineum HOM05D006563 ORTHO05D008154 1.2e-118 429.9 228 93.4
AT3G48540 Arabidopsis thaliana HOM05D006563 ORTHO05D008154 6.4e-115 417.5 227 89.4
Carub.0005s1473 Capsella rubella HOM05D006563 ORTHO05D008154 6.4e-115 417.5 225 90.7
AL5G27990 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 7.1e-114 414.1 227 89.0
CARHR157340 Cardamine hirsuta HOM05D006563 ORTHO05D008154 7.3e-111 404.1 226 87.2
Aa31LG4G17160 Aethionema arabicum HOM05D006563 ORTHO05D008154 9.2e-106 387.1 231 83.5
Cpa.g.sc13.115 Carica papaya HOM05D006563 ORTHO05D008154 6.2e-102 374.4 224 81.7
MD14G1156900 Malus domestica HOM05D006563 ORTHO05D008154 1.1e-98 363.6 224 78.1
Prupe.5G150900 Prunus persica HOM05D006563 ORTHO05D008154 9.3e-98 360.5 223 77.1
Atru.chr6.1794 Acer truncatum HOM05D006563 ORTHO05D008154 3.5e-97 358.6 223 78.0
FAN04G0682 Fragaria x ananassa HOM05D006563 ORTHO05D008154 6.0e-97 357.8 223 75.8
GSVIVG01008544001 Vitis vinifera HOM05D006563 ORTHO05D008154 6.0e-97 357.8 227 77.1
COL.COLO4_28130 Corchorus olitorius HOM05D006563 ORTHO05D008154 7.8e-97 357.5 223 78.9
Ciclev10032657m.g Citrus clementina HOM05D006563 ORTHO05D008154 1.0e-96 357.1 227 77.5
FAN18G2834 Fragaria x ananassa HOM05D006563 ORTHO05D008154 3.0e-96 355.5 223 74.9
Dinv23146 Davidia involucrata HOM05D006563 ORTHO05D008154 3.9e-96 355.1 222 75.2
ClCG03G003770 Citrullus lanatus HOM05D006563 ORTHO05D008154 1.5e-95 353.2 222 77.9
FvH4_5g08340 Fragaria vesca HOM05D006563 ORTHO05D008154 1.5e-95 353.2 223 74.4
FAN04G3009 Fragaria x ananassa HOM05D006563 ORTHO05D008154 1.5e-95 353.2 223 74.9
FAN13G1867 Fragaria x ananassa HOM05D006563 ORTHO05D008154 1.5e-95 353.2 223 74.9
Gohir.D12G192100 Gossypium hirsutum HOM05D006563 ORTHO05D008154 1.5e-95 353.2 223 78.5
RcHm_v2.0_Chr7g0190121 Rosa chinensis HOM05D006563 ORTHO05D008154 1.9e-95 352.8 223 75.3
Thecc.03G129300 Theobroma cacao HOM05D006563 ORTHO05D008154 2.5e-95 352.4 223 76.7
TAR374G0821 Trochodendron aralioides HOM05D006563 ORTHO05D008154 5.6e-95 351.3 223 76.2
MELO3C002362.2 Cucumis melo HOM05D006563 ORTHO05D008154 7.3e-95 350.9 223 77.6
Gorai.008G206400 Gossypium raimondii HOM05D006563 ORTHO05D008154 7.3e-95 350.9 223 78.0
Potri.015G096400 Populus trichocarpa HOM05D006563 ORTHO05D008154 7.3e-95 350.9 227 76.7
TWI39G0919 Tripterygium wilfordii HOM05D006563 ORTHO05D008154 9.6e-95 350.5 221 76.0
CANSAT80G0303 Cannabis sativa HOM05D006563 ORTHO05D008154 2.8e-94 349.0 225 75.1
Peaxi162Scf00089g00627 Petunia axillaris HOM05D006563 ORTHO05D008154 3.6e-94 348.6 224 75.4
Duzib205G1898 Durio zibethinus HOM05D006563 ORTHO05D008154 4.8e-94 348.2 223 75.8
Manes.06G119700 Manihot esculenta HOM05D006563 ORTHO05D008154 4.8e-94 348.2 225 76.0
Gohir.A12G189700 Gossypium hirsutum HOM05D006563 ORTHO05D008154 1.1e-93 347.1 223 77.1
CsaV3_1G009660 Cucumis sativus L. HOM05D006563 ORTHO05D008154 2.4e-93 345.9 222 76.6
QL10p002894 Quercus lobata HOM05D006563 ORTHO05D008154 1.5e-92 343.2 247 70.0
SalBow6G4201 Salvia bowleyana HOM05D006563 ORTHO05D008154 1.5e-92 343.2 221 73.3
SalBow6G4357 Salvia bowleyana HOM05D006563 ORTHO05D008154 1.5e-92 343.2 221 73.3
CAN.G352.13 Capsicum annuum HOM05D006563 ORTHO05D008154 3.4e-92 342.0 225 74.7
Actinidia08872 Actinidia chinensis HOM05D006563 ORTHO05D008154 7.6e-92 340.9 225 72.9
CSS0042372 Camellia sinensis var. sinensis HOM05D006563 ORTHO05D008154 1.7e-91 339.7 221 73.8
Hma1.2p1_0426F.1_g150610 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.7e-91 339.7 221 74.7
Phvul.003G211300 Phaseolus vulgaris HOM05D006563 ORTHO05D008154 1.7e-91 339.7 221 73.8
Nitab4.5_0003282g0060 Nicotiana tabacum HOM05D006563 ORTHO05D008154 2.2e-91 339.3 221 73.8
Sc04g0000640 Simmondsia chinensis HOM05D006563 ORTHO05D008154 2.2e-91 339.3 221 74.7
Lj4g0002806 Lotus japonicus HOM05D006563 ORTHO05D008154 3.8e-91 338.6 221 73.3
Hund02442 Selenicereus undatus HOM05D006563 ORTHO05D008154 4.9e-91 338.2 223 74.0
Oeu036009.4 Olea europaea HOM05D006563 ORTHO05D008154 8.4e-91 337.4 225 73.3
Nitab4.5_0004750g0020 Nicotiana tabacum HOM05D006563 ORTHO05D008154 1.1e-90 337.0 227 74.4
Sed0017169 Sechium edule HOM05D006563 ORTHO05D008154 1.9e-90 336.3 225 74.2
HanXRQChr13g0408701 Helianthus annuus HOM05D006563 ORTHO05D008154 4.2e-90 335.1 225 71.6
Aqoxy5G03376 Aquilegia oxysepala HOM05D006563 ORTHO05D008154 9.3e-90 334.0 232 70.3
Os01g0765000 Oryza sativa ssp. japonica HOM05D006563 ORTHO05D008154 1.2e-89 333.6 233 71.7
SGA_v2.0_scaffold7G04149 Striga asiatica HOM05D006563 ORTHO05D008154 1.6e-89 333.2 222 73.0
PGSC0003DMG400015182 Solanum tuberosum HOM05D006563 ORTHO05D008154 2.1e-89 332.8 226 73.0
Ca_26101_v3 Cicer arietinum L. HOM05D006563 ORTHO05D008154 3.5e-89 332.0 227 70.0
Solyc03g111350.3 Solanum lycopersicum HOM05D006563 ORTHO05D008154 4.6e-89 331.6 226 73.0
Sopen03g030480 Solanum pennellii HOM05D006563 ORTHO05D008154 4.6e-89 331.6 226 73.0
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 6.0e-89 331.3 219 70.8
Cc09_g04000 Coffea canephora HOM05D006563 ORTHO05D008154 7.8e-89 330.9 246 68.3
Rhsim12G0174600 Rhododendron simsii HOM05D006563 ORTHO05D008154 1.3e-88 330.1 229 71.6
Medtr4g103300 Medicago truncatula HOM05D006563 ORTHO05D008154 1.7e-88 329.7 230 69.6
Eucgr.B00111 Eucalyptus grandis HOM05D006563 ORTHO05D008154 2.3e-88 329.3 239 68.6
PSO017G5417 Papaver somniferum HOM05D006563 ORTHO05D008154 2.3e-88 329.3 227 69.2
MBI07_g16949_MAGBIO Magnolia biondii HOM05D006563 ORTHO05D008154 5.1e-88 328.2 226 70.4
Lsat_1_v5_gn_1_28920 Lactuca sativa HOM05D006563 ORTHO05D008154 6.6e-88 327.8 223 70.4
HPP92_025255 Vanilla planifolia HOM05D006563 ORTHO05D008154 1.5e-87 326.6 226 70.4
MSTRG.9682 Avicennia marina HOM05D006563 ORTHO05D008154 3.3e-87 325.5 221 69.7
Nn4g22315 Nelumbo nucifera HOM05D006563 ORTHO05D008154 1.3e-86 323.6 209 74.2
Oeu040847.2 Olea europaea HOM05D006563 ORTHO05D008154 1.3e-86 323.6 258 64.0
Migut.D01965 Erythranthe guttata HOM05D006563 ORTHO05D008154 6.2e-86 321.2 221 68.3
Sabra15G0117200 Salix brachista HOM05D006563 ORTHO05D008154 6.2e-86 321.2 233 69.1
AUR62029612 Chenopodium quinoa HOM05D006563 ORTHO05D008154 3.1e-85 318.9 205 72.7
FAN08G2924 Fragaria x ananassa HOM05D006563 ORTHO05D008154 5.3e-85 318.2 244 64.3
Glyma.05G048400 Glycine max HOM05D006563 ORTHO05D008154 9.0e-85 317.4 205 74.1
ATR0561G278 Amborella trichopoda HOM05D006563 ORTHO05D008154 1.7e-83 313.2 205 72.2
EL10Ac5g11412 Beta vulgaris HOM05D006563 ORTHO05D008154 2.2e-83 312.8 209 72.2
CDE05G1358 Ceratophyllum demersum HOM05D006563 ORTHO05D008154 8.4e-83 310.8 207 72.0
unitig_46.g18474 Utricularia gibba HOM05D006563 ORTHO05D008154 1.4e-82 310.1 226 68.1
CiPaw.11G007100 Carya illinoinensis HOM05D006563 ORTHO05D008154 4.2e-82 308.5 223 70.0
PGR044G0473 Punica granatum HOM05D006563 ORTHO05D008154 7.1e-82 307.8 223 69.1
PSO478G0702 Papaver somniferum HOM05D006563 ORTHO05D008154 5.1e-80 301.6 209 69.4
AUR62034825 Chenopodium quinoa HOM05D006563 ORTHO05D008154 6.7e-80 301.2 205 69.8
arahy.Tifrunner.gnm1.ann1.G9M8TR Arachis hypogaea HOM05D006563 ORTHO05D008154 2.8e-78 295.8 218 67.9
arahy.Tifrunner.gnm1.ann1.76974R Arachis hypogaea HOM05D006563 ORTHO05D008154 3.7e-78 295.4 232 66.8
SEGI_38890 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 1.1e-77 293.9 243 62.1
Potri.012G097800 Populus trichocarpa HOM05D006563 ORTHO05D008154 3.1e-77 292.4 225 66.7
TPR.G19207 Trifolium pratense HOM05D006563 ORTHO05D008154 1.6e-73 280.0 152 84.9
AagrBONN_evm.TU.Sc2ySwM_228.2386 Anthoceros agrestis HOM05D006563 ORTHO05D008154 1.1e-71 273.9 176 73.3
Haze_07139 Corylus avellana HOM05D006563 ORTHO05D008154 1.9e-71 273.1 206 68.4
Pp3c2_32260 Physcomitrium patens HOM05D006563 ORTHO05D008154 5.7e-71 271.6 175 70.9
VMungo1215G3263 Vigna mungo HOM05D006563 ORTHO05D008154 1.1e-69 267.3 172 75.0
Zm00001eb370270 Zea mays HOM05D006563 ORTHO05D008154 9.0e-69 264.2 228 60.5
DCAR_016389 Daucus carota HOM05D006563 ORTHO05D008154 5.8e-68 261.5 232 58.2
Medtr4g057655 Medicago truncatula HOM05D006563 ORTHO05D008154 1.3e-64 250.4 225 57.3
SMO116G0330 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 2.3e-64 249.6 147 78.2
vmacro16718 Vaccinium macrocarpon HOM05D006563 ORTHO05D008154 1.6e-62 243.4 327 44.0
Sc04g0000170 Simmondsia chinensis HOM05D006563 ORTHO05D008154 2.2e-62 243.0 207 62.3
PRCOL_00002657 Prasinoderma coloniale HOM05D006563 ORTHO05D008154 4.1e-61 238.8 173 61.8
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 4.5e-60 235.3 221 56.1
Medtr4g071665 Medicago truncatula HOM05D006563 ORTHO05D008154 7.7e-60 234.6 225 55.1
Lalb_Chr13g0297241 Lupinus albus HOM05D006563 ORTHO05D008154 1.9e-58 229.9 152 71.7
Cc09_g03990 Coffea canephora HOM05D006563 ORTHO05D008154 1.6e-57 226.9 123 84.6
Lj5A96G46 Lonicera japonica HOM05D006563 ORTHO05D008154 1.6e-57 226.9 145 77.9
MCO04G397 Micromonas commoda HOM05D006563 ORTHO05D008154 3.4e-52 209.1 135 67.4
Cre19.g750897 Chlamydomonas reinhardtii HOM05D006563 ORTHO05D008154 1.0e-43 181.0 174 52.9
CBR_g19095 Chara braunii HOM05D006563 ORTHO05D008154 4.7e-41 172.2 134 61.2
Haze_26466 Corylus avellana HOM05D006563 ORTHO05D008154 9.7e-39 164.5 168 48.2
AL1G65740 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 1.8e-29 133.7 63 95.2
SMO199G0092 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 2.5e-26 123.2 86 64.0
Hma1.2p1_0426F.1_g150620 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 4.7e-25 119.0 68 85.3
SMO361G0344 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 4.7e-25 119.0 63 79.4
MD06G1141700 Malus domestica HOM05D006563 ORTHO05D008154 4.4e-23 112.5 142 45.1
SEGI_22016 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 4.5e-20 102.4 122 47.5
Hma1.2p1_0426F.1_g150600 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.6e-17 94.0 88 53.4


User provided reference genes

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