Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 0.0e+00 1225.3 612 100.0
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1194.5 598 99.7
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 0.0e+00 1184.9 600 98.7
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 5.4e-302 1040.4 602 89.7
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 3.8e-287 991.1 626 83.5
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 1.8e-268 929.1 600 83.5
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 8.8e-244 847.0 684 69.9
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 4.5e-232 808.1 663 68.9
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 2.0e-224 782.7 670 65.8
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 5.9e-224 781.2 677 66.9
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 7.2e-222 774.2 670 65.5
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 3.7e-202 708.8 627 65.1
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 1.5e-166 590.5 668 54.3
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 3.8e-162 575.9 684 51.5
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 4.3e-89 333.2 684 36.7
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 2.8e-88 330.5 725 34.3
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 4.0e-87 326.6 698 37.1
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 5.2e-87 326.2 711 35.6
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 7.5e-86 322.4 769 33.7
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 9.8e-86 322.0 625 36.8
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 1.3e-85 321.6 719 35.3
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 4.9e-85 319.7 642 36.6
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 1.4e-84 318.2 647 36.3
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 1.5e-81 308.1 706 36.4
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 7.3e-81 305.8 742 34.1
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 1.6e-80 304.7 812 32.9
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 8.1e-80 302.4 705 34.9
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 8.1e-80 302.4 735 33.7
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 3.1e-79 300.4 625 36.5
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 5.2e-79 299.7 649 35.0
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 6.8e-79 299.3 648 35.2
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.2e-78 298.5 646 35.1
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 7.5e-78 295.8 623 36.8
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 7.5e-78 295.8 757 32.5
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.3e-77 292.4 738 32.8
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 1.9e-76 291.2 657 35.9
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 4.1e-76 290.0 762 33.1
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 9.2e-76 288.9 764 32.3
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 9.2e-76 288.9 751 31.3
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.2e-75 288.5 766 32.6
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.7e-75 287.3 751 31.3
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 7.8e-75 285.8 736 31.7
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.3e-74 285.0 751 31.2
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 2.3e-74 284.3 810 31.9
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 8.6e-74 282.3 697 33.1
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.1e-73 282.0 674 33.4
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 1.1e-73 282.0 526 37.8
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 2.5e-73 280.8 739 31.4
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 4.3e-73 280.0 745 31.5
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 7.3e-73 279.3 745 32.3
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 1.2e-72 278.5 782 30.2
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 1.2e-72 278.5 750 32.0
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 1.2e-72 278.5 784 31.4
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 1.6e-72 278.1 770 31.7
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 8.1e-72 275.8 637 33.6
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.1e-71 275.4 753 31.7
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 1.1e-71 275.4 691 32.9
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 1.4e-71 275.0 653 32.6
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.8e-71 274.6 694 32.6
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 3.1e-71 273.9 731 31.9
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 5.2e-71 273.1 641 34.5
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.0e-70 271.2 597 33.5
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 2.0e-70 271.2 607 35.1
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 3.4e-70 270.4 695 31.8
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 4.4e-70 270.0 763 30.7
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 9.9e-70 268.9 773 32.0
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 1.7e-69 268.1 753 31.2
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 1.4e-68 265.0 686 32.9
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 3.2e-68 263.8 531 37.1
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 5.4e-68 263.1 627 33.5
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.6e-67 261.5 728 31.7
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 1.6e-67 261.5 695 31.5
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 2.1e-67 261.2 745 30.5
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 3.9e-66 256.9 755 30.3
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 5.1e-66 256.5 683 31.9
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 5.1e-66 256.5 738 30.9
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 5.6e-65 253.1 217 59.9
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 2.8e-64 250.8 642 31.5
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 3.6e-64 250.4 628 33.1
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 4.7e-64 250.0 769 31.1
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 1.1e-63 248.8 758 29.8
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 1.4e-63 248.4 626 31.8
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.8e-63 248.1 220 57.7
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 1.2e-62 245.4 645 30.9
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.5e-62 245.0 652 31.6
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 1.5e-62 245.0 722 31.7
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 3.4e-62 243.8 623 31.3
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 5.8e-62 243.0 666 30.6
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 1.3e-61 241.9 526 34.6
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 1.3e-61 241.9 498 34.3
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 1.7e-61 241.5 640 31.9
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 2.4e-60 237.7 725 31.4
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 4.2e-60 236.9 566 33.7
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 2.1e-59 234.6 470 35.7
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 2.7e-59 234.2 714 31.7
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 2.7e-59 234.2 235 54.0
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 7.8e-59 232.6 740 29.3
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.7e-58 231.5 536 32.8
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 3.0e-58 230.7 227 54.6
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 3.0e-58 230.7 532 34.0
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 6.6e-58 229.6 191 56.0
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 3.3e-57 227.3 670 31.2
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 2.6e-54 217.6 190 57.4
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 2.2e-53 214.5 177 58.2
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 4.3e-49 200.3 695 28.6
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 4.9e-45 186.8 195 49.7
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 8.4e-45 186.0 189 52.4
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 2.4e-44 184.5 670 27.9
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 1.9e-41 174.9 194 49.0
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 2.4e-39 167.9 178 51.1
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 4.9e-37 160.2 524 28.4
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 6.7e-34 149.8 178 47.2
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 1.8e-31 141.7 185 47.0
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 6.9e-31 139.8 193 42.0
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 5.9e-30 136.7 201 44.3
C03p37040 Brassica napus HOM05D000922 ORTHO05D007418 1.6e-27 128.6 81 79.0
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 1.4e-18 99.0 109 46.8
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 5.2e-10 70.5 50 70.0
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.4e-07 62.4 79 48.1
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 1.2e-06 59.3 77 46.8
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.6e-06 58.2 86 44.2


User provided reference genes

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