Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1573.9 800 100.0
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 0.0e+00 1486.5 802 96.0
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 0.0e+00 1431.4 759 97.6
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1100.9 830 75.3
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 0.0e+00 1100.9 830 75.3
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 0.0e+00 1097.8 890 70.4
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 1.3e-247 860.1 928 57.2
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.3e-239 833.6 956 56.7
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 3.2e-238 828.9 950 56.9
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 9.1e-233 810.8 945 56.6
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 1.6e-232 810.1 935 55.8
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 1.6e-232 810.1 935 55.8
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 3.4e-227 792.3 953 53.7
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 1.0e-223 780.8 965 54.0
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 9.5e-214 747.7 924 54.5
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 1.8e-212 743.4 924 54.3
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 7.5e-211 738.0 914 54.4
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 6.4e-210 734.9 928 53.9
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 2.5e-182 643.3 901 49.3
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 3.3e-182 642.9 901 49.2
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 1.7e-170 604.0 894 48.9
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 6.9e-164 582.0 896 47.0
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 9.0e-164 581.6 896 47.0
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 7.3e-89 332.8 1051 33.4
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.4e-78 297.4 894 32.4
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.2e-22 112.8 193 39.9
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 5.1e-18 97.4 453 26.0
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 8.8e-18 96.7 230 31.3
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.1e-17 96.3 449 25.4
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 2.6e-17 95.1 173 35.8
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.4e-17 94.4 325 28.3
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 9.7e-17 93.2 535 24.5
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.3e-16 92.8 578 24.6
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 1.7e-16 92.4 722 22.4
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.7e-16 92.4 353 26.1
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 6.3e-16 90.5 252 30.6
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 6.3e-16 90.5 388 29.1
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.4e-15 89.4 502 24.9
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.8e-15 89.0 243 31.3
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 4.1e-15 87.8 404 28.2
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 5.9e-14 84.0 429 24.7
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 7.7e-14 83.6 474 23.8
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.7e-13 82.4 344 28.5
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 2.9e-13 81.6 341 27.6
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 6.5e-13 80.5 495 25.1
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.1e-12 79.7 201 28.9
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.5e-12 79.3 378 24.3
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 1.5e-12 79.3 325 26.2
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 1.9e-12 79.0 201 34.3
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 1.9e-12 79.0 104 41.3
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.9e-12 79.0 374 24.9
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.9e-12 79.0 711 24.2
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.5e-12 78.6 368 24.7
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.5e-12 78.6 374 25.1
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 3.2e-12 78.2 300 27.3
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 3.2e-12 78.2 353 27.2
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.2e-12 78.2 194 30.4
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 4.2e-12 77.8 196 29.1
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 5.5e-12 77.4 436 24.5
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.5e-12 77.4 341 28.2
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.2e-12 77.0 352 25.3
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 7.2e-12 77.0 388 24.2
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 9.4e-12 76.6 335 26.9
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 9.4e-12 76.6 246 28.5
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.2e-11 76.3 334 26.6
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 1.2e-11 76.3 318 26.4
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.2e-11 76.3 323 26.9
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.7e-11 75.1 425 24.5
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 3.6e-11 74.7 463 24.6
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 3.6e-11 74.7 262 28.6
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 4.7e-11 74.3 61 55.7
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 4.7e-11 74.3 285 28.8
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 6.1e-11 73.9 336 27.1
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 6.1e-11 73.9 193 30.6
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.1e-11 73.9 70 55.7
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 8.0e-11 73.6 185 31.4
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.0e-10 73.2 376 24.5
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.4e-10 72.8 260 27.3
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.4e-10 72.8 216 29.2
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.8e-10 72.4 185 30.8
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.8e-10 72.4 314 29.0
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 2.3e-10 72.0 182 30.2
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 4.0e-10 71.2 185 30.3
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 6.7e-10 70.5 182 29.1
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 8.8e-10 70.1 185 30.3
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.1e-09 69.7 194 28.9
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 2.0e-09 68.9 249 26.9
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.6e-09 68.6 314 23.6
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.4e-09 67.8 203 26.6
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 4.4e-09 67.8 214 29.0
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 4.4e-09 67.8 395 22.5
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 5.7e-09 67.4 298 27.9
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 7.5e-09 67.0 193 28.0
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.7e-08 65.9 478 23.6
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.7e-08 65.9 310 25.8
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.2e-08 65.5 183 29.5
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 2.2e-08 65.5 350 23.7
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 2.8e-08 65.1 253 25.7
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 3.7e-08 64.7 409 23.2
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 3.7e-08 64.7 161 31.1
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 3.7e-08 64.7 167 32.9
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 4.8e-08 64.3 514 23.5
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 6.3e-08 63.9 314 25.2
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 6.3e-08 63.9 281 28.5
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 8.2e-08 63.5 231 23.8
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 1.1e-07 63.2 260 25.4
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 1.1e-07 63.2 357 26.1
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.4e-07 62.8 184 29.3
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 1.8e-07 62.4 298 24.8
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 2.4e-07 62.0 225 28.4
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 3.1e-07 61.6 165 28.5
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 3.1e-07 61.6 382 24.3
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 4.1e-07 61.2 239 26.4
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 4.1e-07 61.2 189 28.0
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 5.3e-07 60.8 346 22.5
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 5.3e-07 60.8 346 22.5
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 7.0e-07 60.5 309 24.6
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.6e-06 59.3 165 30.3
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 2.0e-06 58.9 62 51.6
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 3.5e-06 58.2 161 26.7
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.5e-06 58.2 258 24.4
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.5e-06 58.2 258 24.4
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 4.5e-06 57.8 204 24.5
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 4.5e-06 57.8 51 52.9
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 5.9e-06 57.4 115 33.0
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 7.7e-06 57.0 57 50.9


User provided reference genes

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