Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 1.8e-144 516.2 315 100.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 5.1e-70 268.9 358 50.8
BolC1t03005H Brassica oleracea HOM05D004041 ORTHO05D004564 1.1e-40 171.4 92 97.8
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 7.2e-40 168.7 140 70.7
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 7.2e-40 168.7 140 70.7
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 7.2e-40 168.7 140 70.7
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 7.2e-40 168.7 141 69.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.1e-39 167.2 141 69.5
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 2.1e-39 167.2 141 69.5
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 1.8e-38 164.1 140 69.3
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.5e-37 161.0 145 64.8
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.9e-37 160.6 141 66.7
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.3e-37 159.8 141 65.2
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 5.7e-37 159.1 139 66.9
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 7.4e-37 158.7 140 65.0
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.2e-36 157.1 138 65.9
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 8.5e-33 145.2 144 58.3
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 3.2e-32 143.3 160 53.8
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 5.5e-32 142.5 144 56.9
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 5.5e-32 142.5 161 52.2
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 5.5e-32 142.5 142 57.0
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 7.2e-32 142.1 145 57.9
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.2e-31 141.4 145 56.6
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.6e-31 141.0 154 53.9
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.6e-31 141.0 144 55.6
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.6e-31 139.8 144 57.6
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 4.7e-31 139.4 140 56.4
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 7.9e-31 138.7 142 54.9
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 7.9e-31 138.7 145 55.2
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 7.9e-31 138.7 144 55.6
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.0e-30 138.3 138 57.2
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.4e-30 137.9 139 56.1
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.8e-30 137.5 144 54.9
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 2.3e-30 137.1 142 54.9
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.3e-30 137.1 145 56.6
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 2.3e-30 137.1 144 54.2
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 3.0e-30 136.7 139 55.4
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 3.0e-30 136.7 144 55.6
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.9e-30 136.3 139 55.4
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 3.9e-30 136.3 143 57.3
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 3.9e-30 136.3 142 54.9
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.1e-30 136.0 144 53.5
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.1e-30 136.0 144 53.5
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 6.7e-30 135.6 145 54.5
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 6.7e-30 135.6 149 53.7
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 6.7e-30 135.6 149 53.7
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.5e-29 134.4 146 54.8
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.0e-29 134.0 164 51.2
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 2.6e-29 133.7 144 54.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 3.3e-29 133.3 139 56.8
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 4.4e-29 132.9 143 55.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 4.4e-29 132.9 171 48.5
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 7.4e-29 132.1 144 54.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 9.7e-29 131.7 146 54.8
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 9.7e-29 131.7 167 47.9
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.8e-28 130.2 161 47.8
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 3.7e-28 129.8 163 49.7
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.7e-28 129.8 161 47.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.7e-28 129.8 126 59.5
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 4.8e-28 129.4 146 55.5
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.8e-28 129.4 140 53.6
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 6.3e-28 129.0 146 55.5
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.3e-28 129.0 144 54.9
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.3e-28 129.0 144 54.9
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 6.3e-28 129.0 140 54.3
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 6.3e-28 129.0 145 53.1
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 8.2e-28 128.6 163 49.1
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 8.2e-28 128.6 144 54.9
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.2e-28 128.6 144 54.9
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.1e-27 128.3 146 53.4
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.4e-27 127.9 144 54.9
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.8e-27 127.5 137 54.7
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.4e-27 127.1 155 50.3
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 3.1e-27 126.7 146 54.1
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.3e-27 125.9 144 52.8
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 5.3e-27 125.9 145 51.0
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 5.3e-27 125.9 137 54.0
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 5.3e-27 125.9 141 53.9
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.5e-26 124.4 147 53.1
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 2.0e-26 124.0 143 53.1
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-26 124.0 147 52.4
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.0e-26 124.0 143 50.3
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.6e-26 123.6 147 52.4
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 7.7e-26 122.1 143 51.7
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 7.7e-26 122.1 143 53.8
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.3e-25 121.3 238 38.7
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.7e-25 120.9 133 54.9
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.2e-25 120.6 141 50.4
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.2e-25 120.6 139 52.5
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.2e-25 120.6 143 53.8
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.9e-25 120.2 136 50.7
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.1e-24 118.2 136 55.1
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 5.5e-24 115.9 139 51.1
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 9.4e-24 115.2 238 39.5
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.2e-23 114.8 138 50.0
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.2e-23 114.8 146 50.0
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.6e-23 114.4 146 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 2.7e-23 113.6 136 46.3
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 3.6e-23 113.2 92 69.6
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 3.6e-23 113.2 104 61.5
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 4.7e-23 112.8 140 50.0
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.0e-22 111.7 139 47.5
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.0e-22 111.7 224 37.1
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.4e-22 111.3 139 49.6
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 3.0e-22 110.2 152 48.0
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 9.7e-21 105.1 107 56.1
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.7e-20 104.4 128 48.4
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 2.8e-20 103.6 75 73.3
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.8e-20 103.6 103 56.3
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.7e-20 103.2 113 51.3
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 4.8e-20 102.8 104 57.7
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 8.2e-20 102.1 111 54.1
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-19 101.7 109 53.2
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.4e-19 101.3 102 55.9
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.4e-19 100.5 101 57.4
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 3.1e-19 100.1 79 67.1
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 4.1e-19 99.8 159 42.8
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.2e-18 98.2 136 42.6
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 5.9e-18 95.9 103 53.4
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 7.7e-18 95.5 96 56.2
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 7.7e-18 95.5 147 41.5
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.7e-17 94.4 131 46.6
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 2.9e-17 93.6 87 59.8
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.9e-17 93.6 129 48.8
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.9e-17 93.6 129 48.8
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.2e-16 89.0 104 51.9
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.6e-15 87.8 98 54.1
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.1e-15 87.4 96 53.1
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.6e-15 86.7 126 45.2
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.6e-15 86.7 104 51.0
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 3.6e-15 86.7 79 59.5
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 6.1e-15 85.9 96 52.1
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-14 85.1 103 52.4
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 5.2e-14 82.8 108 49.1
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.7e-14 82.4 94 48.9
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.0e-13 80.9 105 46.7
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 4.4e-13 79.7 103 46.6
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 9.7e-13 78.6 109 45.0
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.2e-12 77.4 100 46.0
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 6.3e-12 75.9 96 46.9
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 6.3e-12 75.9 90 52.2
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 6.3e-12 75.9 103 44.7
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 6.3e-12 75.9 100 45.0
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.1e-11 75.1 105 43.8
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.8e-11 74.3 98 45.9
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.1e-11 73.6 91 51.6
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.1e-11 72.0 93 50.5
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 9.1e-11 72.0 96 45.8
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 9.1e-11 72.0 87 49.4
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 4.5e-10 69.7 131 41.2
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 4.5e-10 69.7 101 44.6
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.7e-10 68.9 96 45.8
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 7.7e-10 68.9 102 42.2
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.1e-08 65.1 60 60.0
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.5e-08 63.9 88 42.0
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 8.0e-07 58.9 97 36.1
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 4.0e-06 56.6 62 53.2
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.8e-06 55.8 79 44.3


User provided reference genes

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