Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49989 Brassica carinata HOM05D000906 ORTHO05D000713 7.1e-29 129.8 61 100.0
C01p30350 Brassica napus HOM05D000906 ORTHO05D000713 7.1e-29 129.8 61 100.0
BcaC02g09833 Brassica carinata HOM05D000906 ORTHO05D000713 2.7e-28 127.9 61 98.4
C04p36050 Brassica napus HOM05D000906 ORTHO05D000713 2.7e-28 127.9 61 98.4
A05p31480 Brassica napus HOM05D000906 ORTHO05D000713 1.3e-25 119.0 61 93.4
A09p20900 Brassica napus HOM05D000906 ORTHO05D000713 1.4e-24 115.5 61 93.4
C02p20930 Brassica napus HOM05D000906 ORTHO05D000713 5.3e-24 113.6 61 91.8
BolC2t08235H Brassica oleracea HOM05D000906 ORTHO05D000713 5.5e-21 103.6 65 78.5
BcaC02g09588 Brassica carinata HOM05D000906 ORTHO05D000713 2.7e-20 101.3 50 94.0
A04p10740 Brassica napus HOM05D000906 ORTHO05D000713 2.7e-20 101.3 50 94.0
C04p44460 Brassica napus HOM05D000906 ORTHO05D000713 2.7e-20 101.3 50 94.0
BolC4t26016H Brassica oleracea HOM05D000906 ORTHO05D000713 2.7e-20 101.3 50 94.0
BraA04t16738Z Brassica rapa HOM05D000906 ORTHO05D000713 2.7e-20 101.3 50 94.0
BcaB06g27103 Brassica carinata HOM05D000906 ORTHO05D000713 4.6e-20 100.5 50 92.0
Sp7g04520 Schrenkiella parvula HOM05D000906 ORTHO05D000713 6.7e-19 96.7 50 88.0
Thhalv10027806m.g Eutrema salsugineum HOM05D000906 ORTHO05D000713 3.7e-17 90.9 50 82.0
CARHR103070 Cardamine hirsuta HOM05D000906 ORTHO05D000713 1.1e-16 89.4 50 78.0
AT2G05260 Arabidopsis thaliana HOM05D000906 ORTHO05D000713 1.8e-16 88.6 50 76.0
AL3G42810 Arabidopsis lyrata HOM05D000906 ORTHO05D000713 2.4e-16 88.2 50 76.0
Carub.0003s2672 Capsella rubella HOM05D000906 ORTHO05D000713 4.1e-16 87.4 50 76.0
Aa31LG9G110 Aethionema arabicum HOM05D000906 ORTHO05D000713 6.9e-16 86.7 50 78.0
THA.LOC104809327 Tarenaya hassleriana HOM05D000906 ORTHO05D000713 1.5e-15 85.5 48 72.9
MD06G1108800 Malus domestica HOM05D000906 ORTHO05D000713 4.4e-10 67.4 47 61.7
THA.LOC104813043 Tarenaya hassleriana HOM05D000906 ORTHO05D000713 4.4e-10 67.4 47 57.4
Manes.02G009100 Manihot esculenta HOM05D000906 ORTHO05D000713 5.7e-10 67.0 46 63.0
Cpa.g.sc79.19 Carica papaya HOM05D000906 ORTHO05D000713 7.4e-10 66.6 46 60.9
Duzib068G1046 Durio zibethinus HOM05D000906 ORTHO05D000713 1.3e-09 65.9 49 55.1
CANSAT21G1627 Cannabis sativa HOM05D000906 ORTHO05D000713 1.7e-09 65.5 46 56.5
MD14G1129700 Malus domestica HOM05D000906 ORTHO05D000713 1.7e-09 65.5 47 59.6
AL6G45050 Arabidopsis lyrata HOM05D000906 ORTHO05D000713 2.2e-09 65.1 47 55.3
Ciclev10020881m.g Citrus clementina HOM05D000906 ORTHO05D000713 2.2e-09 65.1 49 57.1
Oeu009967.1 Olea europaea HOM05D000906 ORTHO05D000713 2.2e-09 65.1 46 58.7
Prupe.5G121600 Prunus persica HOM05D000906 ORTHO05D000713 2.2e-09 65.1 47 59.6
AT4G10955 Arabidopsis thaliana HOM05D000906 ORTHO05D000713 2.8e-09 64.7 47 55.3
CARHR255650 Cardamine hirsuta HOM05D000906 ORTHO05D000713 2.8e-09 64.7 49 51.0
Potri.001G090500 Populus trichocarpa HOM05D000906 ORTHO05D000713 2.8e-09 64.7 46 58.7
Aa31LG9G11180 Aethionema arabicum HOM05D000906 ORTHO05D007307 3.7e-09 64.3 45 64.4
Sabra01G0066700 Salix brachista HOM05D000906 ORTHO05D000713 3.7e-09 64.3 46 58.7
Migut.E01255 Erythranthe guttata HOM05D000906 ORTHO05D000713 4.8e-09 63.9 46 58.7
Gohir.D12G238300 Gossypium hirsutum HOM05D000906 ORTHO05D000713 4.8e-09 63.9 56 51.8
Gorai.008G255200 Gossypium raimondii HOM05D000906 ORTHO05D000713 4.8e-09 63.9 56 51.8
Manes.01G049800 Manihot esculenta HOM05D000906 ORTHO05D000713 4.8e-09 63.9 46 58.7
Gohir.D08G125600 Gossypium hirsutum HOM05D000906 ORTHO05D000713 6.3e-09 63.5 50 54.0
Gorai.004G132500 Gossypium raimondii HOM05D000906 ORTHO05D000713 6.3e-09 63.5 50 54.0
HanXRQChr17g0534911 Helianthus annuus HOM05D000906 ORTHO05D000713 6.3e-09 63.5 57 54.4
PSO170G5849 Papaver somniferum HOM05D000906 ORTHO05D000713 6.3e-09 63.5 46 54.3
MSTRG.11916 Avicennia marina HOM05D000906 ORTHO05D000713 8.2e-09 63.2 47 59.6
Phvul.002G164900 Phaseolus vulgaris HOM05D000906 ORTHO05D000713 8.2e-09 63.2 44 59.1
Rhsim07G0081800 Rhododendron simsii HOM05D000906 ORTHO05D000713 8.2e-09 63.2 47 55.3
Glyma.01G226000 Glycine max HOM05D000906 ORTHO05D000713 1.1e-08 62.8 44 59.1
Gohir.A12G237100 Gossypium hirsutum HOM05D000906 ORTHO05D000713 1.1e-08 62.8 56 50.0
Potri.003G141100 Populus trichocarpa HOM05D000906 ORTHO05D000713 1.1e-08 62.8 46 56.5
Thecc.03G299500 Theobroma cacao HOM05D000906 ORTHO05D000713 1.1e-08 62.8 49 53.1
Glyma.05G217400 Glycine max HOM05D000906 ORTHO05D000713 1.4e-08 62.4 46 58.7
Glyma.08G023400 Glycine max HOM05D000906 ORTHO05D000713 1.4e-08 62.4 46 58.7
BcaC04g21090 Brassica carinata HOM05D000906 ORTHO05D000713 1.8e-08 62.0 49 53.1
A09p28250 Brassica napus HOM05D000906 ORTHO05D000713 1.8e-08 62.0 49 53.1
C09p35810 Brassica napus HOM05D000906 ORTHO05D000713 1.8e-08 62.0 49 53.1
BolC9t56415H Brassica oleracea HOM05D000906 ORTHO05D000713 1.8e-08 62.0 49 53.1
BraA09t38394Z Brassica rapa HOM05D000906 ORTHO05D000713 1.8e-08 62.0 49 53.1
CSS0049582 Camellia sinensis var. sinensis HOM05D000906 ORTHO05D000713 1.8e-08 62.0 47 53.2
FvH4_5g04760 Fragaria vesca HOM05D000906 ORTHO05D000713 1.8e-08 62.0 60 48.3
FAN13G1267 Fragaria x ananassa HOM05D000331 ORTHO05D000713 1.8e-08 62.0 60 48.3
FAN18G0378 Fragaria x ananassa HOM05D000906 ORTHO05D000713 1.8e-08 62.0 60 48.3
FAN18G4285 Fragaria x ananassa HOM05D000906 ORTHO05D000713 1.8e-08 62.0 60 48.3
Gohir.A08G112600 Gossypium hirsutum HOM05D000906 ORTHO05D000713 1.8e-08 62.0 50 52.0
BcaB01g01566 Brassica carinata HOM05D000906 ORTHO05D000713 2.4e-08 61.6 49 53.1
ECA233G4442 Erigeron canadensis HOM05D000906 ORTHO05D000713 2.4e-08 61.6 54 48.1
vmacro13892 Vaccinium macrocarpon HOM05D000906 ORTHO05D000713 2.4e-08 61.6 47 53.2
MSTRG.1803 Avicennia marina HOM05D000906 ORTHO05D000713 3.1e-08 61.2 47 57.4
CSS0012151 Camellia sinensis var. sinensis HOM05D000906 ORTHO05D000713 3.1e-08 61.2 47 53.2
CSS0025662 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 3.1e-08 61.2 47 53.2
CSS0046468 Camellia sinensis var. sinensis HOM05D000906 ORTHO05D000713 3.1e-08 61.2 47 53.2
Ca_17477_v3 Cicer arietinum L. HOM05D000906 ORTHO05D000713 3.1e-08 61.2 46 56.5
Sp6g06530 Schrenkiella parvula HOM05D000906 ORTHO05D000713 3.1e-08 61.2 49 49.0
VMungo1215G2633 Vigna mungo HOM05D000906 ORTHO05D000713 3.1e-08 61.2 44 56.8
Carub.0006s2970 Capsella rubella HOM05D000906 ORTHO05D000713 4.1e-08 60.8 47 48.9
TAR375G0072 Trochodendron aralioides HOM05D000906 ORTHO05D000713 4.1e-08 60.8 46 54.3
CiPaw.11G120000 Carya illinoinensis HOM05D000906 ORTHO05D000713 5.3e-08 60.5 46 54.3
Lsat_1_v5_gn_3_11060 Lactuca sativa HOM05D000906 ORTHO05D000713 5.3e-08 60.5 57 49.1
MBI06_g08482_MAGBIO Magnolia biondii HOM05D000906 ORTHO05D000713 5.3e-08 60.5 46 52.2
Lj8C207G14 Lonicera japonica HOM05D000776 ORTHO05D000713 6.9e-08 60.1 47 48.9
PGR042G3312 Punica granatum HOM05D000906 ORTHO05D000713 6.9e-08 60.1 46 56.5
MELO3C005767.2 Cucumis melo HOM05D000906 ORTHO05D000713 9.1e-08 59.7 46 52.2
Hma1.2p1_0440F.1_g153390 Hydrangea macrophylla HOM05D000906 ORTHO05D000713 9.1e-08 59.7 55 47.3
Hma1.2p1_1188F.1_g265310 Hydrangea macrophylla HOM05D000906 ORTHO05D000713 9.1e-08 59.7 46 47.8
Thecc.03G299300 Theobroma cacao HOM05D000906 ORTHO05D000713 9.1e-08 59.7 49 49.0
ECA246G1265 Erigeron canadensis HOM05D000906 ORTHO05D000713 1.2e-07 59.3 57 49.1
Eucgr.E00878 Eucalyptus grandis HOM05D000906 ORTHO05D000713 1.2e-07 59.3 59 44.1
Lalb_Chr05g0211501 Lupinus albus HOM05D000906 ORTHO05D000713 1.2e-07 59.3 46 52.2
Prupe.5G121400 Prunus persica HOM05D000906 ORTHO05D000713 1.2e-07 59.3 47 57.4
HanXRQChr09g0252851 Helianthus annuus HOM05D000906 ORTHO05D000713 1.5e-07 58.9 46 54.3
PSO135G0031 Papaver somniferum HOM05D000906 ORTHO05D000713 1.5e-07 58.9 44 54.5
Psat7g025000 Pisum sativum HOM05D000906 ORTHO05D000713 1.5e-07 58.9 52 50.0
TAR636G3694 Trochodendron aralioides HOM05D000906 ORTHO05D000713 1.5e-07 58.9 45 51.1
ClCG01G001720 Citrullus lanatus HOM05D000906 ORTHO05D000713 2.0e-07 58.5 46 50.0
HanXRQChr10g0316981 Helianthus annuus HOM05D000906 ORTHO05D000713 2.0e-07 58.5 54 50.0
Phvul.002G298800 Phaseolus vulgaris HOM05D000906 ORTHO05D000713 2.0e-07 58.5 46 54.3
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 2.0e-07 58.5 46 52.2
Lsat_1_v5_gn_6_12600 Lactuca sativa HOM05D000906 ORTHO05D000713 2.6e-07 58.2 54 48.1
SalBow6G3094 Salvia bowleyana HOM05D000906 ORTHO05D000713 2.6e-07 58.2 47 51.1
Cfa011990 Carpinus fangiana HOM05D000906 ORTHO05D000713 3.4e-07 57.8 45 53.3
SHI06964 Sapria himalayana HOM05D000906 ORTHO05D000713 3.4e-07 57.8 43 58.1
SGA_v2.0_scaffold111G31407 Striga asiatica HOM05D000906 ORTHO05D000713 3.4e-07 57.8 48 52.1
VMungo0251G1591 Vigna mungo HOM05D000906 ORTHO05D000713 3.4e-07 57.8 44 54.5
CSS0039118 Camellia sinensis var. sinensis HOM05D000906 ORTHO05D000713 4.5e-07 57.4 46 54.3
Ca_24499_v3 Cicer arietinum L. HOM05D000331 ORTHO05D000732 4.5e-07 57.4 44 56.8
FvH4_5g04751 Fragaria vesca HOM05D000906 ORTHO05D000713 4.5e-07 57.4 49 51.0
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 4.5e-07 57.4 46 54.3
LjContig00312_ERROPOS870357g0026565 Lotus japonicus HOM05D000906 ORTHO05D000713 4.5e-07 57.4 44 52.3
Lalb_Chr16g0376921 Lupinus albus HOM05D000906 ORTHO05D000713 4.5e-07 57.4 44 54.5
Nitab4.5_0001210g0120 Nicotiana tabacum HOM05D000906 ORTHO05D000713 4.5e-07 57.4 47 53.2
PSO384G1976 Papaver somniferum HOM05D000906 ORTHO05D000713 4.5e-07 57.4 44 54.5
SalBow8G0730 Salvia bowleyana HOM05D000906 ORTHO05D000713 4.5e-07 57.4 47 51.1
TWI60G0162 Tripterygium wilfordii HOM05D000906 ORTHO05D000713 4.5e-07 57.4 45 53.3
CSS0005245 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 5.9e-07 57.0 45 51.1
Medtr8g099555 Medicago truncatula HOM05D000906 ORTHO05D000713 5.9e-07 57.0 46 52.2
QL02p030180 Quercus lobata HOM05D000906 ORTHO05D000713 5.9e-07 57.0 43 51.2
RcHm_v2.0_Chr7g0194511 Rosa chinensis HOM05D000906 ORTHO05D000713 5.9e-07 57.0 49 51.0
Sed0012948 Sechium edule HOM05D000906 ORTHO05D000713 5.9e-07 57.0 46 47.8
arahy.Tifrunner.gnm1.ann1.CI0Z11 Arachis hypogaea HOM05D000906 ORTHO05D000713 7.7e-07 56.6 44 52.3
Dinv29287 Davidia involucrata HOM05D000906 ORTHO05D000713 7.7e-07 56.6 46 50.0
FAN08G3409 Fragaria x ananassa HOM05D000331 ORTHO05D000732 7.7e-07 56.6 49 51.0
FAN18G3858 Fragaria x ananassa HOM05D000906 ORTHO05D000713 7.7e-07 56.6 49 51.0
RcHm_v2.0_Chr7g0194501 Rosa chinensis HOM05D000906 ORTHO05D000713 7.7e-07 56.6 60 43.3
Aqoxy7G00088 Aquilegia oxysepala HOM05D000906 ORTHO05D000713 1.0e-06 56.2 44 50.0
PSO384G2569 Papaver somniferum HOM05D000906 ORTHO05D000713 1.0e-06 56.2 48 50.0
TAR636G0151 Trochodendron aralioides HOM05D000906 ORTHO05D000713 1.0e-06 56.2 46 50.0
TAR636G2621 Trochodendron aralioides HOM05D000906 ORTHO05D000713 1.0e-06 56.2 46 50.0
TAR636G2971 Trochodendron aralioides HOM05D000906 ORTHO05D000713 1.0e-06 56.2 46 50.0
Cc08_g16170 Coffea canephora HOM05D000906 ORTHO05D000713 1.3e-06 55.8 44 54.5
Dinv37522 Davidia involucrata HOM05D000906 ORTHO05D000713 1.3e-06 55.8 46 52.2
Nitab4.5_0006775g0070 Nicotiana tabacum HOM05D000906 ORTHO05D000713 1.3e-06 55.8 47 51.1
DCAR_001962 Daucus carota HOM05D000906 ORTHO05D000713 1.7e-06 55.5 47 51.1
Lj4g0027871 Lotus japonicus HOM05D000906 ORTHO05D000713 1.7e-06 55.5 46 52.2
Lalb_Chr09g0332381 Lupinus albus HOM05D000906 ORTHO05D000713 1.7e-06 55.5 46 50.0
PSO384G1964 Papaver somniferum HOM05D000906 ORTHO05D000713 1.7e-06 55.5 45 53.3
Psat2g185880 Pisum sativum HOM05D000906 ORTHO05D000713 1.7e-06 55.5 44 52.3
PGSC0003DMG400012273 Solanum tuberosum HOM05D000906 ORTHO05D000713 1.7e-06 55.5 47 51.1
TPR.G3417 Trifolium pratense HOM05D000906 ORTHO05D000713 1.7e-06 55.5 46 54.3
TAR636G0993 Trochodendron aralioides HOM05D000906 ORTHO05D000713 1.7e-06 55.5 44 50.0
CSS0037167 Camellia sinensis var. sinensis HOM05D000906 ORTHO05D000713 2.2e-06 55.1 46 50.0
CAN.G1804.13 Capsicum annuum HOM05D000906 ORTHO05D000713 2.2e-06 55.1 47 51.1
CiPaw.11G119900 Carya illinoinensis HOM05D000906 ORTHO05D000713 2.2e-06 55.1 46 50.0
CsaV3_5G001860 Cucumis sativus L. HOM05D000906 ORTHO05D000713 2.2e-06 55.1 46 47.8
Eucgr.E00874 Eucalyptus grandis HOM05D000906 ORTHO05D000713 2.2e-06 55.1 46 50.0
PSO135G0424 Papaver somniferum HOM05D000906 ORTHO05D000713 2.2e-06 55.1 45 44.4
SalBow4G2150 Salvia bowleyana HOM05D000906 ORTHO05D000713 2.2e-06 55.1 46 50.0
TAR636G1562 Trochodendron aralioides HOM05D000906 ORTHO05D000713 2.2e-06 55.1 45 46.7
HPP92_027382 Vanilla planifolia HOM05D000906 ORTHO05D000713 2.2e-06 55.1 44 50.0
Migut.F00221 Erythranthe guttata HOM05D000906 ORTHO05D000713 2.9e-06 54.7 45 48.9
Oeu022750.1 Olea europaea HOM05D000906 ORTHO05D000713 2.9e-06 54.7 45 48.9
PSO135G0650 Papaver somniferum HOM05D000906 ORTHO05D000713 2.9e-06 54.7 48 47.9
Phvul.002G043900 Phaseolus vulgaris HOM05D000906 ORTHO05D000713 2.9e-06 54.7 33 63.6
HPP92_024172 Vanilla planifolia HOM05D000906 ORTHO05D000713 2.9e-06 54.7 46 50.0
Lsat_1_v5_gn_2_18740 Lactuca sativa HOM05D000906 ORTHO05D000713 3.8e-06 54.3 59 44.1
Lsat_1_v5_gn_2_18760 Lactuca sativa HOM05D000906 ORTHO05D000713 3.8e-06 54.3 46 47.8
Nn3g18994 Nelumbo nucifera HOM05D000906 ORTHO05D000713 3.8e-06 54.3 48 47.9
Lalb_Chr05g0224081 Lupinus albus HOM05D000906 ORTHO05D000713 5.0e-06 53.9 46 50.0
Os01g0719900 Oryza sativa ssp. japonica HOM05D000906 ORTHO05D000713 5.0e-06 53.9 37 64.9
Medtr5g009140 Medicago truncatula HOM05D000906 ORTHO05D000713 6.5e-06 53.5 44 50.0
Sopen03g023120 Solanum pennellii HOM05D000906 ORTHO05D000713 6.5e-06 53.5 49 44.9
arahy.Tifrunner.gnm1.ann1.FY4DMZ Arachis hypogaea HOM05D000906 ORTHO05D000713 8.5e-06 53.1 46 47.8
CAN.G968.7 Capsicum annuum HOM05D000906 ORTHO05D000713 8.5e-06 53.1 49 46.9
ECA232G3720 Erigeron canadensis HOM05D000906 ORTHO05D000713 8.5e-06 53.1 44 47.7
PSO384G4424 Papaver somniferum HOM05D000906 ORTHO05D000713 8.5e-06 53.1 45 42.2
Solyc03g083370.3 Solanum lycopersicum HOM05D000906 ORTHO05D000713 8.5e-06 53.1 49 44.9
SGA_v2.0_scaffold44G16797 Striga asiatica HOM05D000906 ORTHO05D000713 8.5e-06 53.1 46 52.2


User provided reference genes

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