Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 0.0e+00 1260.7 630 100.0
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 0.0e+00 1209.9 618 98.5
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 0.0e+00 1146.3 628 92.4
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 0.0e+00 1115.5 618 91.6
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 1.9e-302 1042.0 553 95.1
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 9.9e-291 1003.0 621 83.4
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 2.0e-275 952.2 629 78.2
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 2.2e-258 895.6 623 73.7
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 4.8e-253 877.9 621 73.8
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 1.7e-237 826.2 636 69.5
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 2.8e-237 825.5 628 69.7
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 2.1e-224 782.7 660 62.9
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 4.7e-192 675.2 452 76.1
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 7.1e-156 555.1 582 52.4
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 9.0e-127 458.4 680 42.2
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 5.1e-122 442.6 683 39.4
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.4e-121 438.7 675 40.1
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.2e-120 435.3 675 40.6
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 3.4e-118 429.9 662 40.8
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 7.7e-118 428.7 673 39.5
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 2.9e-117 426.8 694 39.9
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 7.2e-116 422.2 662 39.9
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 3.6e-115 419.9 670 39.3
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.7e-115 419.5 707 38.8
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 6.1e-115 419.1 682 38.4
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 1.0e-114 418.3 672 38.8
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.0e-114 418.3 672 38.7
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 1.3e-112 411.4 654 38.7
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 1.7e-112 411.0 661 39.9
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 4.8e-112 409.5 661 39.3
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.1e-111 408.3 687 38.1
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.4e-111 407.1 594 40.7
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 7.7e-110 402.1 664 38.3
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.7e-109 401.0 635 40.5
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 9.4e-108 395.2 634 39.7
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 2.1e-107 394.0 647 38.6
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.7e-107 393.7 634 39.6
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 4.7e-107 392.9 708 36.9
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 6.1e-107 392.5 590 40.5
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 8.0e-107 392.1 651 38.6
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 2.3e-106 390.6 679 37.4
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 2.0e-105 387.5 663 38.0
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 2.2e-104 384.0 663 37.1
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 2.2e-104 384.0 640 38.3
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 2.8e-104 383.6 645 37.5
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 4.1e-103 379.8 647 37.9
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.6e-102 377.9 615 38.0
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 4.2e-100 369.8 650 36.2
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 4.2e-100 369.8 682 35.9
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 5.5e-100 369.4 596 37.6
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 2.7e-99 367.1 648 36.7
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 4.7e-99 366.3 668 35.8
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 1.5e-97 361.3 641 36.0
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 3.4e-97 360.1 619 37.8
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 5.7e-97 359.4 555 38.4
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 5.7e-97 359.4 678 34.7
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 1.3e-96 358.2 676 34.8
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 2.2e-96 357.5 653 37.1
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 1.8e-95 354.4 677 37.2
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 7.0e-95 352.4 665 35.5
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 7.7e-94 349.0 675 35.3
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 3.8e-93 346.7 667 35.1
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 8.5e-93 345.5 706 34.3
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 2.5e-92 344.0 598 36.3
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 3.6e-91 340.1 573 36.3
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 8.0e-91 339.0 675 34.1
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.0e-90 338.6 647 35.2
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 1.4e-90 338.2 665 34.4
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 4.4e-89 333.2 664 34.3
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 8.3e-88 328.9 682 34.0
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 2.4e-87 327.4 597 35.3
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 4.5e-86 323.2 624 34.8
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 8.6e-85 318.9 582 34.7
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 4.3e-84 316.6 532 39.3
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 1.6e-83 314.7 561 36.0
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 6.1e-83 312.8 530 37.0
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 1.4e-82 311.6 646 34.7
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 6.8e-82 309.3 649 33.1
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 7.3e-76 289.3 482 36.3
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 9.5e-76 288.9 620 32.9
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.6e-75 288.1 621 32.7
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 2.1e-75 287.7 724 30.2
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 5.2e-74 283.1 619 33.8
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 1.2e-73 282.0 632 32.8
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.4e-73 280.4 554 33.2
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 2.9e-72 277.3 426 38.0
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 7.8e-70 269.2 393 40.2
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 5.0e-69 266.5 663 30.8
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 5.2e-66 256.5 417 37.9
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 1.5e-65 255.0 328 44.8
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 3.4e-65 253.8 645 30.4
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 1.4e-63 248.4 646 30.2
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 7.1e-63 246.1 646 30.3
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 1.0e-61 242.3 666 29.3
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 3.0e-61 240.7 650 28.8
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 4.3e-60 236.9 688 31.1
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 4.6e-54 216.9 382 34.6
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 4.6e-54 216.9 364 38.5
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.2e-39 167.5 193 51.3
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 6.2e-35 153.3 363 31.4
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.2e-33 149.1 321 34.6
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 1.5e-33 148.7 316 33.5
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.1e-31 142.5 154 48.1
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 6.3e-19 100.1 159 39.0
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 4.1e-18 97.4 136 42.6
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 1.3e-16 92.4 296 30.4
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.4e-15 89.0 59 72.9
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.4e-15 89.0 59 72.9
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.9e-15 88.6 96 54.2
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 1.0e-13 82.8 299 27.8
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.2e-09 69.3 365 24.7
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 7.7e-09 66.6 214 29.0
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 2.5e-07 61.6 168 31.0
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.2e-06 59.3 137 29.2
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 2.7e-06 58.2 87 37.9


User provided reference genes

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