Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p29660 Brassica napus HOM05D003435 ORTHO05D004032 5.8e-141 504.2 254 100.0
BolC1t02908H Brassica oleracea HOM05D003435 ORTHO05D004032 5.8e-141 504.2 254 100.0
BcaC09g50042 Brassica carinata HOM05D003435 ORTHO05D004032 6.5e-100 367.9 187 100.0
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 5.6e-59 231.9 213 66.7
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 1.6e-58 230.3 214 66.8
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 2.1e-58 229.9 214 66.4
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 2.1e-58 229.9 214 66.4
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 2.1e-58 229.9 214 66.4
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 4.7e-58 228.8 214 65.9
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 6.1e-58 228.4 214 65.9
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 6.1e-58 228.4 214 65.9
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 3.0e-57 226.1 215 66.0
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 3.0e-57 226.1 215 66.0
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 6.8e-57 224.9 215 65.6
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 1.5e-56 223.8 215 65.6
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 1.7e-52 210.3 215 61.4
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 5.0e-52 208.8 216 61.1
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 8.6e-52 208.0 215 61.4
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 1.1e-51 207.6 215 60.9
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 1.1e-51 207.6 214 60.7
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 1.5e-51 207.2 208 61.1
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 1.5e-51 207.2 208 61.1
Lalb_Chr16g0388361 Lupinus albus HOM05D003435 ORTHO05D004032 2.5e-51 206.5 214 57.9
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 3.3e-51 206.1 212 61.8
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 3.3e-51 206.1 215 60.0
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 1.6e-50 203.8 207 59.4
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 2.1e-50 203.4 207 60.4
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 2.1e-50 203.4 207 58.9
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 2.1e-50 203.4 207 60.4
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 2.1e-50 203.4 212 61.3
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 3.6e-50 202.6 214 58.4
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 4.7e-50 202.2 207 59.4
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 4.7e-50 202.2 207 60.4
Hund13566 Selenicereus undatus HOM05D003435 ORTHO05D004032 6.2e-50 201.8 216 59.3
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 8.0e-50 201.4 215 59.5
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 8.0e-50 201.4 207 59.9
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 1.0e-49 201.1 207 58.9
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 1.4e-49 200.7 213 58.7
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.3e-49 199.9 213 58.7
QL06p042284 Quercus lobata HOM05D003435 ORTHO05D004032 2.3e-49 199.9 215 59.5
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 3.1e-49 199.5 215 58.6
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 3.1e-49 199.5 214 58.4
TPR.G19005 Trifolium pratense HOM05D003435 ORTHO05D004032 3.1e-49 199.5 207 59.4
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 4.0e-49 199.1 214 58.4
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 4.0e-49 199.1 214 57.9
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 4.0e-49 199.1 214 57.9
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 4.0e-49 199.1 215 58.6
Lalb_Chr09g0323051 Lupinus albus HOM05D003435 ORTHO05D004032 5.2e-49 198.7 220 55.9
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 6.8e-49 198.4 215 58.6
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 8.9e-49 198.0 213 57.7
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 1.5e-48 197.2 213 58.2
Medtr5g017800 Medicago truncatula HOM05D003435 ORTHO05D004032 1.5e-48 197.2 206 58.7
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 1.5e-48 197.2 213 57.7
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 1.5e-48 197.2 215 58.1
VMungo1215G2578 Vigna mungo HOM05D003435 ORTHO05D004032 1.5e-48 197.2 207 57.5
Actinidia02768 Actinidia chinensis HOM05D003435 ORTHO05D004032 2.0e-48 196.8 214 56.5
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 2.0e-48 196.8 216 57.9
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.0e-48 196.8 214 57.5
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 2.0e-48 196.8 213 58.2
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 2.6e-48 196.4 220 56.8
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 2.6e-48 196.4 220 56.8
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 2.6e-48 196.4 207 58.9
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 4.4e-48 195.7 215 56.7
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 4.4e-48 195.7 214 56.1
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 7.5e-48 194.9 207 57.0
MELO3C020891.2 Cucumis melo HOM05D003435 ORTHO05D004032 9.8e-48 194.5 214 58.4
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 9.8e-48 194.5 214 56.5
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 9.8e-48 194.5 207 58.0
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 9.8e-48 194.5 215 57.7
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 1.3e-47 194.1 214 57.0
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 1.3e-47 194.1 214 57.0
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 2.2e-47 193.4 214 57.0
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 2.9e-47 193.0 207 57.5
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 3.7e-47 192.6 214 57.0
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 3.7e-47 192.6 214 57.0
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 3.7e-47 192.6 215 56.3
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 4.9e-47 192.2 214 57.5
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 4.9e-47 192.2 215 57.2
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 4.9e-47 192.2 205 57.1
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 6.4e-47 191.8 207 57.5
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 6.4e-47 191.8 135 75.6
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 6.4e-47 191.8 135 75.6
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 6.4e-47 191.8 214 56.1
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 6.4e-47 191.8 213 56.3
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 1.1e-46 191.0 214 57.5
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 1.9e-46 190.3 213 57.3
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 2.4e-46 189.9 217 54.8
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 2.4e-46 189.9 135 73.3
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 3.2e-46 189.5 135 74.8
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 3.2e-46 189.5 135 74.8
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 4.1e-46 189.1 214 55.6
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 4.1e-46 189.1 213 56.3
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 5.4e-46 188.7 135 73.3
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 9.2e-46 188.0 214 55.6
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 1.6e-45 187.2 251 50.6
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 1.6e-45 187.2 214 55.6
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 1.6e-45 187.2 213 54.5
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 2.7e-45 186.4 135 71.1
Potri.005G136300 Populus trichocarpa HOM05D003435 ORTHO05D004032 2.7e-45 186.4 213 54.9
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 3.5e-45 186.0 135 71.9
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 6.0e-45 185.3 214 56.1
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 6.0e-45 185.3 213 54.5
unitig_27.g25323 Utricularia gibba HOM05D003435 ORTHO05D004032 6.0e-45 185.3 135 70.4
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 1.7e-44 183.7 214 54.7
VMungo0251G2411 Vigna mungo HOM05D003435 ORTHO05D004032 1.7e-44 183.7 135 71.1
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 1.1e-43 181.0 135 71.1
Ah.10g029830 Amaranthus hybridus HOM05D003435 ORTHO05D004032 1.5e-43 180.6 135 70.4
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 1.9e-43 180.3 136 69.9
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 1.9e-43 180.3 136 69.9
CDE05G1509 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.8e-42 176.4 135 67.4
Os09g0408000 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 4.7e-42 175.6 205 50.2
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 4.7e-42 175.6 205 50.7
HPP92_006173 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.4e-41 174.1 134 67.9
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 8.9e-41 171.4 205 51.2
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 1.5e-40 170.6 215 54.4
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.5e-40 170.6 190 54.2
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 2.1e-37 160.2 134 61.9
vmacro17936 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 3.9e-36 156.0 122 65.6
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 1.5e-35 154.1 175 53.1
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 1.6e-34 150.6 133 58.6
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 4.0e-33 146.0 134 56.0
GSVIVG01004485001 Vitis vinifera HOM05D003435 ORTHO05D004032 1.2e-32 144.4 92 78.3
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 2.6e-32 143.3 134 58.2
CDE05G0314 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 5.8e-32 142.1 92 73.9
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 5.8e-32 142.1 143 52.4
SHI23027 Sapria himalayana HOM05D003435 ORTHO05D004032 4.9e-31 139.0 92 72.8
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 2.7e-29 133.3 131 50.4
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 5.1e-28 129.0 131 48.9
HPP92_006266 Vanilla planifolia HOM05D003435 ORTHO05D004032 6.2e-10 68.9 54 63.0
Mapoly0072s0002 Marchantia polymorpha HOM05D003435 ORTHO05D004032 1.8e-09 67.4 57 59.6
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 3.8e-07 59.7 107 43.9
GSVIVG01002902001 Vitis vinifera HOM05D003435 ORTHO05D004032 8.4e-07 58.5 107 46.7


User provided reference genes

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