Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 8.2e-129 463.8 240 100.0
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.2e-126 455.7 236 100.0
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 7.5e-114 414.1 242 91.3
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 7.5e-114 414.1 242 91.3
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.5e-101 373.2 246 86.2
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 6.8e-91 337.8 265 72.5
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 6.4e-81 304.7 262 66.8
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 8.4e-65 251.1 209 70.3
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 5.8e-58 228.4 206 65.5
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 3.2e-56 222.6 258 58.5
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 8.1e-52 208.0 298 50.0
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 7.9e-47 191.4 296 44.9
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 3.9e-46 189.1 312 45.5
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 1.3e-44 184.1 311 44.1
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.1e-44 183.3 208 57.7
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 2.8e-44 183.0 302 45.7
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.7e-41 173.7 311 44.4
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 4.2e-40 169.1 311 42.8
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 1.6e-39 167.2 305 42.3
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.6e-39 167.2 311 42.1
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 7.9e-39 164.9 308 41.9
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.9e-37 160.2 297 42.1
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.4e-35 154.1 222 49.5
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 5.3e-35 152.1 228 50.9
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 2.6e-34 149.8 223 47.1
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 4.5e-34 149.1 217 49.8
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 5.8e-34 148.7 217 48.4
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 3.8e-33 146.0 221 47.5
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 6.5e-33 145.2 214 49.5
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 1.1e-32 144.4 238 42.9
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.4e-32 144.1 267 42.3
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.9e-32 143.7 223 48.0
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 4.2e-32 142.5 211 46.9
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 4.2e-32 142.5 216 47.2
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 4.2e-32 142.5 314 38.2
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 5.5e-32 142.1 225 48.0
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 7.1e-32 141.7 319 39.5
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 7.1e-32 141.7 245 42.9
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 9.3e-32 141.4 318 38.4
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 9.3e-32 141.4 238 41.6
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.1e-31 140.2 225 45.3
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 7.9e-31 138.3 219 46.1
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 3.0e-30 136.3 225 45.8
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 6.7e-30 135.2 227 45.8
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 8.7e-30 134.8 218 47.2
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.7e-30 134.8 238 41.2
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 8.7e-30 134.8 247 44.5
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.9e-29 133.7 319 37.6
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.9e-29 133.7 325 37.2
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.9e-29 133.7 238 41.2
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.5e-29 133.3 245 45.3
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 1.6e-28 130.6 214 50.0
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 2.2e-28 130.2 219 47.0
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.8e-28 129.8 212 46.7
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 3.7e-28 129.4 223 45.3
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 4.8e-28 129.0 221 45.2
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 4.8e-28 129.0 224 45.1
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 4.8e-28 129.0 253 41.9
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 4.8e-28 129.0 212 42.9
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 4.8e-28 129.0 211 46.4
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 6.3e-28 128.6 220 47.3
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 6.3e-28 128.6 221 47.1
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 8.2e-28 128.3 218 46.3
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 1.1e-27 127.9 226 44.2
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-27 127.9 215 43.7
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.4e-27 127.5 211 46.4
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.8e-27 127.1 219 45.2
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.8e-27 127.1 247 41.3
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 2.4e-27 126.7 225 43.6
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.4e-27 126.7 219 45.2
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.1e-27 126.3 248 41.5
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.1e-27 126.3 215 45.1
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 4.1e-27 125.9 226 45.6
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.1e-27 125.9 225 45.3
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.1e-27 125.9 219 45.7
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.1e-27 125.9 215 42.8
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 5.3e-27 125.6 213 44.6
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 5.3e-27 125.6 229 46.7
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 9.0e-27 124.8 211 46.0
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 9.0e-27 124.8 215 42.3
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 9.0e-27 124.8 244 40.2
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.5e-26 124.0 226 44.7
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.5e-26 124.0 224 43.8
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.0e-26 123.6 295 36.6
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 2.0e-26 123.6 239 42.3
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 2.6e-26 123.2 250 40.8
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.6e-26 123.2 177 47.5
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.5e-26 122.5 181 47.5
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.5e-26 122.5 224 46.0
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 5.9e-26 122.1 214 45.3
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 7.6e-26 121.7 185 51.4
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 7.6e-26 121.7 181 47.0
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 1.0e-25 121.3 246 40.7
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.0e-25 121.3 207 44.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.7e-25 120.6 267 38.2
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 2.9e-25 119.8 254 38.6
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 5.0e-25 119.0 216 41.2
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.1e-24 117.9 225 47.1
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.4e-24 117.5 280 36.1
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.4e-24 117.5 273 37.4
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.4e-24 117.5 203 45.3
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.5e-24 116.7 211 43.1
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.2e-24 116.3 226 43.4
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 3.2e-24 116.3 214 41.1
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 3.2e-24 116.3 226 45.1
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.2e-24 115.9 268 39.6
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 4.2e-24 115.9 271 33.9
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.5e-24 115.5 318 35.2
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 7.2e-24 115.2 212 44.3
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 9.3e-24 114.8 226 41.2
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.6e-23 114.0 213 44.1
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.7e-23 113.2 226 42.9
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 2.7e-23 113.2 207 42.0
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 7.9e-23 111.7 212 42.5
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 1.0e-22 111.3 208 44.2
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 1.8e-22 110.5 213 41.3
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.3e-22 110.2 213 42.7
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 3.0e-22 109.8 239 38.9
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 8.7e-22 108.2 212 39.6
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.5e-21 107.5 312 33.3
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.5e-21 107.5 204 42.2
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.5e-21 107.5 223 39.0
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.5e-21 107.5 158 48.7
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.3e-21 106.3 268 37.3
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 5.7e-21 105.5 232 39.2
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 5.7e-21 105.5 275 37.8
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 5.7e-21 105.5 209 39.2
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.4e-21 105.1 292 34.9
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-20 104.0 187 42.2
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.7e-20 104.0 253 37.2
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.7e-20 102.8 220 37.7
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 2.4e-19 100.1 209 37.8
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.3e-19 99.0 242 38.0
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 5.3e-19 99.0 185 40.5
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 5.3e-19 99.0 215 41.4
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 6.9e-19 98.6 148 49.3
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.5e-18 97.4 235 39.1
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.6e-18 96.7 106 55.7
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 5.9e-18 95.5 124 54.0
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 5.9e-18 95.5 202 38.6
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 7.7e-18 95.1 204 40.7
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 3.8e-17 92.8 187 41.7
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.8e-17 92.8 239 37.2
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.8e-17 92.8 325 32.0
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 5.0e-17 92.4 206 40.8
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 8.5e-17 91.7 304 32.2
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 8.5e-17 91.7 116 50.0
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.4e-16 90.9 211 38.9
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 2.5e-16 90.1 168 41.1
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 4.2e-16 89.4 244 38.1
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 9.4e-16 88.2 258 35.7
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.2e-15 87.8 232 37.5
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.2e-15 87.8 210 34.8
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.6e-15 87.4 303 33.7
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 2.1e-15 87.0 288 32.3
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.7e-15 86.7 259 32.4
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 3.6e-15 86.3 216 36.1
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 3.6e-15 86.3 146 43.8
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.0e-14 84.7 135 45.9
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.8e-14 84.0 119 50.4
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 5.1e-14 82.4 215 34.0
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 2.6e-13 80.1 281 32.0
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 4.4e-13 79.3 256 33.2
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 2.2e-12 77.0 185 35.7
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 6.3e-12 75.5 267 32.6
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.4e-08 64.3 255 28.6
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.5e-08 62.4 157 34.4
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.5e-08 62.4 157 34.4
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 7.2e-08 62.0 131 40.5
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 2.1e-07 60.5 157 33.1
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.1e-07 58.9 86 43.0
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 5.2e-06 55.8 174 34.5


User provided reference genes

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