Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p28130 Brassica napus HOM05D001723 ORTHO05D001706 3.3e-101 371.7 184 100.0
BraA01t02174Z Brassica rapa HOM05D001723 ORTHO05D001706 5.8e-66 254.6 135 92.6
Sp7g13080 Schrenkiella parvula HOM05D001723 ORTHO05D001706 3.1e-59 232.3 140 83.6
BraA08t33146Z Brassica rapa HOM05D001723 ORTHO05D001706 5.3e-59 231.5 151 78.8
A08p11540 Brassica napus HOM05D001723 ORTHO05D001706 9.0e-59 230.7 151 78.1
BcaB04g18269 Brassica carinata HOM05D001723 ORTHO05D001706 2.6e-58 229.2 138 81.9
BcaC07g37861 Brassica carinata HOM05D001723 ORTHO05D001706 9.9e-58 227.3 151 76.8
BolC8t48252H Brassica oleracea HOM05D001723 ORTHO05D001706 9.9e-58 227.3 151 76.8
Thhalv10025783m.g Eutrema salsugineum HOM05D001723 ORTHO05D001706 1.1e-56 223.8 140 79.3
Aa31LG9G2390 Aethionema arabicum HOM05D001723 ORTHO05D001706 8.1e-52 207.6 151 67.5
Carub.0007s2718 Capsella rubella HOM05D001723 ORTHO05D001706 1.1e-51 207.2 152 68.4
AT4G14930 Arabidopsis thaliana HOM05D001723 ORTHO05D001706 1.8e-51 206.5 152 69.1
CARHR221540 Cardamine hirsuta HOM05D001723 ORTHO05D001706 6.9e-51 204.5 139 72.7
AL7G40900 Arabidopsis lyrata HOM05D001723 ORTHO05D001706 2.0e-50 203.0 152 67.8
BolC1t02747H Brassica oleracea HOM05D001723 ORTHO05D001706 3.0e-46 189.1 104 93.3
THA.LOC104808540 Tarenaya hassleriana HOM05D001723 ORTHO05D001706 3.3e-45 185.7 130 70.0
BcaC09g50175 Brassica carinata HOM05D001723 ORTHO05D001706 6.2e-44 181.4 113 84.1
TAR362G0934 Trochodendron aralioides HOM05D001723 ORTHO05D001706 1.9e-37 159.8 131 59.5
Actinidia36961 Actinidia chinensis HOM05D001723 ORTHO05D001706 3.3e-37 159.1 128 60.9
Cpa.g.sc58.115 Carica papaya HOM05D001723 ORTHO05D001706 9.6e-37 157.5 125 60.8
CSS0039979 Camellia sinensis var. sinensis HOM05D001723 ORTHO05D001706 4.8e-36 155.2 130 58.5
Lsat_1_v5_gn_5_148520 Lactuca sativa HOM05D001723 ORTHO05D001706 6.9e-35 151.4 130 57.7
Migut.N00180 Erythranthe guttata HOM05D001723 ORTHO05D001706 1.2e-34 150.6 127 56.7
Potri.010G088000 Populus trichocarpa HOM05D001723 ORTHO05D001706 2.6e-34 149.4 134 55.2
Dinv13991 Davidia involucrata HOM05D001723 ORTHO05D001706 7.6e-34 147.9 142 52.1
Eucgr.H03485 Eucalyptus grandis HOM05D001723 ORTHO05D001706 1.0e-33 147.5 173 45.7
Oeu031233.1 Olea europaea HOM05D001723 ORTHO05D001706 1.0e-33 147.5 130 56.2
DCAR_027213 Daucus carota HOM05D001723 ORTHO05D001706 1.3e-33 147.1 128 55.5
Lj6A609T79 Lonicera japonica HOM05D001723 ORTHO05D001706 1.3e-33 147.1 130 55.4
Oeu023396.1 Olea europaea HOM05D001723 ORTHO05D001706 2.9e-33 146.0 145 51.7
TWI73G0550 Tripterygium wilfordii HOM05D001723 ORTHO05D001706 3.8e-33 145.6 149 51.0
Hma1.2p1_3079F.1_g332430 Hydrangea macrophylla HOM05D001723 ORTHO05D001706 5.0e-33 145.2 140 53.6
SGA_v2.0_scaffold257G45721 Striga asiatica HOM05D001723 ORTHO05D001706 5.0e-33 145.2 136 54.4
Aqoxy2G03381 Aquilegia oxysepala HOM05D001723 ORTHO05D001706 8.4e-33 144.4 126 55.6
Thecc.04G231000 Theobroma cacao HOM05D001723 ORTHO05D001706 8.4e-33 144.4 148 52.0
DCAR_024152 Daucus carota HOM05D001723 ORTHO05D001706 1.1e-32 144.1 155 49.7
Haze_00907 Corylus avellana HOM05D001723 ORTHO05D001706 1.9e-32 143.3 141 49.6
Actinidia40150 Actinidia chinensis HOM05D001723 ORTHO05D001706 2.5e-32 142.9 139 51.1
Potri.010G088100 Populus trichocarpa HOM05D001723 ORTHO05D001706 4.2e-32 142.1 134 52.2
Prupe.1G013000 Prunus persica HOM05D001723 ORTHO05D001706 5.5e-32 141.7 127 59.8
Gorai.N008600 Gossypium raimondii HOM05D001723 ORTHO05D001706 9.3e-32 141.0 141 51.8
Manes.15G028700 Manihot esculenta HOM05D001723 ORTHO05D001706 9.3e-32 141.0 129 52.7
MSTRG.9984 Avicennia marina HOM05D001723 ORTHO05D001706 1.6e-31 140.2 139 51.8
ECA234G1047 Erigeron canadensis HOM05D001723 ORTHO05D001706 1.6e-31 140.2 130 53.8
Gohir.D09G055200 Gossypium hirsutum HOM05D001723 ORTHO05D001706 1.6e-31 140.2 141 51.8
Ciclev10005476m.g Citrus clementina HOM05D001723 ORTHO05D001706 2.1e-31 139.8 137 51.1
Cfa015637 Carpinus fangiana HOM05D001723 ORTHO05D001706 2.7e-31 139.4 141 48.2
MSTRG.21852 Avicennia marina HOM05D001723 ORTHO05D001706 3.5e-31 139.0 127 54.3
SalBow3G4500 Salvia bowleyana HOM05D001723 ORTHO05D001706 6.1e-31 138.3 153 44.4
MD16G1192900 Malus domestica HOM05D001723 ORTHO05D001706 7.9e-31 137.9 130 52.3
TWI09G0142 Tripterygium wilfordii HOM05D001723 ORTHO05D001706 7.9e-31 137.9 130 56.2
GSVIVG01017967001 Vitis vinifera HOM05D001723 ORTHO05D001706 1.0e-30 137.5 130 53.1
COL.COLO4_04249 Corchorus olitorius HOM05D001723 ORTHO05D001706 1.3e-30 137.1 130 50.8
Nitab4.5_0000043g0200 Nicotiana tabacum HOM05D001723 ORTHO05D001706 1.8e-30 136.7 139 47.5
Duzib212G0806 Durio zibethinus HOM05D001723 ORTHO05D001706 2.3e-30 136.3 142 50.0
HanXRQChr04g0110441 Helianthus annuus HOM05D001723 ORTHO05D001706 3.0e-30 136.0 147 50.3
Sabra10G0054800 Salix brachista HOM05D001723 ORTHO05D001706 3.9e-30 135.6 134 50.0
Peaxi162Scf00092g01118 Petunia axillaris HOM05D001723 ORTHO05D001706 5.1e-30 135.2 155 46.5
Sed0024117 Sechium edule HOM05D001723 ORTHO05D001706 5.1e-30 135.2 134 49.3
Gohir.A09G056000 Gossypium hirsutum HOM05D001723 ORTHO05D001706 6.7e-30 134.8 141 50.4
Psat6g207840 Pisum sativum HOM05D001723 ORTHO05D001706 1.1e-29 134.0 141 50.4
PSO761G0351 Papaver somniferum HOM05D001723 ORTHO05D001706 1.5e-29 133.7 128 49.2
QL06p002632 Quercus lobata HOM05D001723 ORTHO05D001706 1.9e-29 133.3 138 47.8
ClCG05G005180 Citrullus lanatus HOM05D001723 ORTHO05D001706 3.3e-29 132.5 134 47.0
MD13G1192300 Malus domestica HOM05D001723 ORTHO05D001706 3.3e-29 132.5 131 50.4
Medtr1g104500 Medicago truncatula HOM05D001723 ORTHO05D001706 3.3e-29 132.5 142 47.9
Nitab4.5_0012971g0010 Nicotiana tabacum HOM05D001723 ORTHO05D001706 3.3e-29 132.5 139 46.8
CsaV3_3G013340 Cucumis sativus L. HOM05D001723 ORTHO05D001706 4.3e-29 132.1 134 47.0
TPR.G5535 Trifolium pratense HOM05D001723 ORTHO05D001706 4.3e-29 132.1 142 49.3
Lj3C737G2 Lonicera japonica HOM05D001723 ORTHO05D001706 5.7e-29 131.7 149 48.3
Sc13g0004350 Simmondsia chinensis HOM05D001723 ORTHO05D001706 5.7e-29 131.7 147 48.3
Thecc.04G230900 Theobroma cacao HOM05D001723 ORTHO05D001706 5.7e-29 131.7 133 51.9
Sopen09g030820 Solanum pennellii HOM05D001723 ORTHO05D001706 7.4e-29 131.3 129 49.6
CAN.G873.2 Capsicum annuum HOM05D001723 ORTHO05D001706 1.3e-28 130.6 130 50.8
DCAR_024601 Daucus carota HOM05D001723 ORTHO05D001706 1.3e-28 130.6 155 46.5
Cc03_g03720 Coffea canephora HOM05D001723 ORTHO05D001706 1.6e-28 130.2 133 47.4
PGSC0003DMG400030079 Solanum tuberosum HOM05D001723 ORTHO05D001706 2.2e-28 129.8 129 48.8
Peaxi162Scf00192g01118 Petunia axillaris HOM05D001723 ORTHO05D001706 2.8e-28 129.4 129 51.2
Sed0011568 Sechium edule HOM05D001723 ORTHO05D001706 6.3e-28 128.3 134 45.5
CiPaw.01G165400 Carya illinoinensis HOM05D001723 ORTHO05D001706 8.2e-28 127.9 136 48.5
Nn1g02293 Nelumbo nucifera HOM05D001723 ORTHO05D001706 1.1e-27 127.5 167 43.1
MELO3C006534.2 Cucumis melo HOM05D001723 ORTHO05D001706 1.4e-27 127.1 131 47.3
Lalb_Chr21g0304661 Lupinus albus HOM05D001723 ORTHO05D001706 1.4e-27 127.1 131 46.6
arahy.Tifrunner.gnm1.ann1.CNDQ24 Arachis hypogaea HOM05D001723 ORTHO05D001706 1.8e-27 126.7 134 49.3
CAN.G907.2 Capsicum annuum HOM05D001723 ORTHO05D001706 1.8e-27 126.7 139 45.3
Glyma.01G238400 Glycine max HOM05D001723 ORTHO05D001706 1.8e-27 126.7 154 45.5
LjContig00408g0025118 Lotus japonicus HOM05D001723 ORTHO05D001706 3.1e-27 125.9 135 48.1
Eucgr.B01087 Eucalyptus grandis HOM05D001723 ORTHO05D001706 4.1e-27 125.6 129 49.6
Glyma.11G005100 Glycine max HOM05D001723 ORTHO05D001706 5.3e-27 125.2 132 47.0
DCAR_002387 Daucus carota HOM05D001723 ORTHO05D001706 6.9e-27 124.8 139 45.3
Phvul.002G045800 Phaseolus vulgaris HOM05D001723 ORTHO05D001706 6.9e-27 124.8 127 49.6
VMungo1215G1889 Vigna mungo HOM05D001723 ORTHO05D001706 6.9e-27 124.8 127 50.4
Ah.04g154540 Amaranthus hybridus HOM05D001723 ORTHO05D001706 1.5e-26 123.6 130 49.2
Nitab4.5_0000321g0100 Nicotiana tabacum HOM05D001723 ORTHO05D001706 2.0e-26 123.2 124 50.8
Sopen06g019370 Solanum pennellii HOM05D001723 ORTHO05D001706 4.5e-26 122.1 128 48.4
PGSC0003DMG400011823 Solanum tuberosum HOM05D001723 ORTHO05D001706 4.5e-26 122.1 130 46.9
EL10Ac3g06419 Beta vulgaris HOM05D001723 ORTHO05D001706 1.0e-25 120.9 125 49.6
Solyc06g054250.4 Solanum lycopersicum HOM05D001723 ORTHO05D001706 1.3e-25 120.6 128 47.7
RcHm_v2.0_Chr4g0416341 Rosa chinensis HOM05D001723 ORTHO05D001706 2.2e-25 119.8 147 43.5
Medtr5g006290 Medicago truncatula HOM05D001723 ORTHO05D001706 2.9e-25 119.4 145 44.8
Nitab4.5_0008118g0040 Nicotiana tabacum HOM05D001723 ORTHO05D001706 3.8e-25 119.0 125 49.6
FvH4_4g15450 Fragaria vesca HOM05D001723 ORTHO05D001706 1.9e-24 116.7 148 43.2
FAN12G0266 Fragaria x ananassa HOM05D001723 ORTHO05D001706 1.9e-24 116.7 148 43.2
Manes.03G179300 Manihot esculenta HOM05D001723 ORTHO05D001706 1.9e-24 116.7 141 44.7
FAN22G0095 Fragaria x ananassa HOM05D001723 ORTHO05D001706 2.5e-24 116.3 148 42.6
Atru.chr4.2474 Acer truncatum HOM05D001723 ORTHO05D001706 2.7e-23 112.8 129 45.7
FAN07G2576 Fragaria x ananassa HOM05D001723 ORTHO05D001706 4.6e-23 112.1 147 42.9
FAN17G0924 Fragaria x ananassa HOM05D001723 ORTHO05D001706 4.6e-23 112.1 148 41.9
Rhsim02G0023800 Rhododendron simsii HOM05D001723 ORTHO05D001706 4.6e-23 112.1 176 40.3
ECA234G2775 Erigeron canadensis HOM05D000917 ORTHO05D000764 1.0e-22 110.9 128 45.3
PGR004G2010 Punica granatum HOM05D001723 ORTHO05D001706 1.0e-22 110.9 131 45.0
Lalb_Chr05g0210981 Lupinus albus HOM05D001723 ORTHO05D001706 2.3e-22 109.8 135 43.7
Hund12135 Selenicereus undatus HOM05D001723 ORTHO05D001706 2.3e-22 109.8 164 37.2
A01p22610 Brassica napus HOM05D001723 ORTHO05D001706 3.0e-22 109.4 51 98.0
Ca_10909_v3 Cicer arietinum L. HOM05D001723 ORTHO05D001706 8.8e-22 107.8 122 46.7
CANSAT78G1709 Cannabis sativa HOM05D001723 ORTHO05D001706 1.5e-21 107.1 153 41.8
HanXRQChr16g0513011 Helianthus annuus HOM05D001723 ORTHO05D001706 2.0e-21 106.7 129 47.3
TPR.G37936 Trifolium pratense HOM05D001723 ORTHO05D001706 2.5e-21 106.3 131 42.0
CAN.G873.8 Capsicum annuum HOM05D001723 ORTHO05D001706 4.3e-21 105.5 156 40.4
Psat4g210600 Pisum sativum HOM05D001723 ORTHO05D001706 5.7e-21 105.1 124 46.0
Atru.ctg752_3.87 Acer truncatum HOM05D001723 ORTHO05D001706 1.7e-20 103.6 91 57.1
unitig_748.g8542 Utricularia gibba HOM05D001723 ORTHO05D001706 4.8e-20 102.1 112 50.0
Ca_24395_v3 Cicer arietinum L. HOM05D001723 ORTHO05D001706 4.1e-19 99.0 130 39.2
Gohir.D09G055100 Gossypium hirsutum HOM05D001723 ORTHO05D001706 5.3e-19 98.6 130 39.2
Gorai.N008700 Gossypium raimondii HOM05D001723 ORTHO05D001706 5.3e-19 98.6 130 39.2
Sopen06g019360 Solanum pennellii HOM05D001723 ORTHO05D001706 6.9e-19 98.2 133 42.1
Atru.chr4.2473 Acer truncatum HOM05D001723 ORTHO05D001706 2.6e-18 96.3 77 57.1
CAN.G873.1 Capsicum annuum HOM05D001723 ORTHO05D001706 2.6e-18 96.3 129 40.3
CDE05G2834 Ceratophyllum demersum HOM05D001723 ORTHO05D001706 3.4e-18 95.9 152 38.8
Os07g0204500 Oryza sativa ssp. japonica HOM05D001723 ORTHO05D001706 1.7e-17 93.6 130 40.8
PGSC0003DMG400011824 Solanum tuberosum HOM05D001723 ORTHO05D001706 2.9e-17 92.8 126 39.7
MBI04_g20816_MAGBIO Magnolia biondii HOM05D001723 ORTHO05D001706 3.8e-17 92.4 159 37.7
Solyc06g054240.3 Solanum lycopersicum HOM05D001723 ORTHO05D001706 8.5e-17 91.3 130 40.0
DCAR_030634 Daucus carota HOM05D001723 ORTHO05D001706 7.2e-16 88.2 143 35.7
Solyc09g075990.3 Solanum lycopersicum HOM05D001723 ORTHO05D001706 7.2e-16 88.2 86 51.2
AUR62038608 Chenopodium quinoa HOM05D001723 ORTHO05D001706 1.6e-15 87.0 86 54.7
AUR62033615 Chenopodium quinoa HOM05D001723 ORTHO05D001706 2.7e-15 86.3 89 52.8
Oeu011623.1 Olea europaea HOM05D001723 ORTHO05D001706 6.1e-15 85.1 81 48.1
HanXRQChr16g0513411 Helianthus annuus HOM05D001723 ORTHO05D001706 8.8e-14 81.3 129 37.2
vmacro13184 Vaccinium macrocarpon HOM05D001723 ORTHO05D051541 4.4e-13 79.0 112 43.8
Rhsim04G0202900 Rhododendron simsii HOM05D001723 ORTHO05D001706 1.3e-12 77.4 157 31.8
Zm00001eb302930 Zea mays HOM05D001723 ORTHO05D001706 1.7e-12 77.0 132 34.1
Medtr5g006300 Medicago truncatula HOM05D001723 ORTHO05D001706 2.8e-12 76.3 84 50.0
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 1.8e-11 73.6 118 40.7
Atru.ctg752_3.88 Acer truncatum HOM05D001723 ORTHO05D001706 2.6e-10 69.7 128 35.2
Cpa.g.sc4127.1 Carica papaya HOM05D001723 ORTHO05D001706 7.7e-10 68.2 44 61.4
CANSAT35G0790 Cannabis sativa HOM05D001723 ORTHO05D001706 1.7e-09 67.0 60 55.0
SalBow2G0264 Salvia bowleyana HOM05D001723 ORTHO05D001706 3.8e-09 65.9 76 42.1
SalBow2G2943 Salvia bowleyana HOM05D001723 ORTHO05D001706 3.8e-09 65.9 67 44.8
HPP92_015927 Vanilla planifolia HOM05D001723 ORTHO05D001706 1.2e-07 60.8 103 35.9
BcaB03g15026 Brassica carinata HOM05D001723 ORTHO05D001706 3.0e-06 56.2 156 25.0
Mapoly0086s0025 Marchantia polymorpha HOM05D001723 ORTHO05D001706 3.0e-06 56.2 159 25.8
Gohir.D10G060000 Gossypium hirsutum HOM05D001723 ORTHO05D001706 4.0e-06 55.8 151 25.8
Gorai.011G064000 Gossypium raimondii HOM05D001723 ORTHO05D001706 5.2e-06 55.5 151 25.8
BcaC03g15432 Brassica carinata HOM05D001723 ORTHO05D001706 6.7e-06 55.1 156 25.0
C02p30420 Brassica napus HOM05D001723 ORTHO05D001706 6.7e-06 55.1 156 25.0
AL2G32610 Arabidopsis lyrata HOM05D001723 ORTHO05D001706 8.8e-06 54.7 153 24.8
Gohir.A09G055950 Gossypium hirsutum HOM05D001723 ORTHO05D001706 8.8e-06 54.7 68 39.7
Gohir.A10G058200 Gossypium hirsutum HOM05D001723 ORTHO05D001706 8.8e-06 54.7 151 25.8


User provided reference genes

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