Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 9.4e-53 209.9 106 100.0
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 6.2e-20 100.9 59 93.2
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 6.4e-17 90.9 56 87.5
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 9.2e-16 87.0 47 95.7
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.2e-15 86.7 49 93.9
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.2e-15 86.7 65 73.8
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 2.7e-15 85.5 50 88.0
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 3.5e-15 85.1 51 82.4
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 6.0e-15 84.3 47 89.4
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 7.8e-15 84.0 44 97.7
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 1.3e-14 83.2 45 93.3
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 3.0e-14 82.0 48 89.6
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 3.9e-14 81.6 53 79.2
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 5.1e-14 81.3 52 88.5
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 8.6e-14 80.5 70 70.0
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 8.6e-14 80.5 46 89.1
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.5e-13 79.7 69 60.9
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.9e-13 79.3 41 97.6
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.9e-13 79.3 41 97.6
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 2.5e-13 79.0 51 80.4
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 2.5e-13 79.0 47 85.1
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 2.5e-13 79.0 68 64.7
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 2.5e-13 79.0 51 78.4
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 3.3e-13 78.6 55 78.2
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 3.3e-13 78.6 65 66.2
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.3e-13 78.2 48 81.2
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 5.6e-13 77.8 41 95.1
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 5.6e-13 77.8 55 76.4
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.6e-13 77.8 48 81.2
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.6e-13 77.8 48 81.2
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 5.6e-13 77.8 44 86.4
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 7.3e-13 77.4 41 95.1
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 7.3e-13 77.4 45 84.4
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 9.5e-13 77.0 55 78.2
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 9.5e-13 77.0 55 78.2
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 9.5e-13 77.0 48 81.2
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 1.2e-12 76.6 45 86.7
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 1.2e-12 76.6 61 75.4
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.6e-12 76.3 44 88.6
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 1.6e-12 76.3 44 86.4
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 1.6e-12 76.3 44 86.4
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 1.6e-12 76.3 67 62.7
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 2.1e-12 75.9 46 80.4
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 2.8e-12 75.5 51 78.4
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.6e-12 75.1 41 92.7
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 4.7e-12 74.7 45 91.1
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 6.2e-12 74.3 53 77.4
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 6.2e-12 74.3 41 90.2
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 6.2e-12 74.3 58 70.7
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 1.1e-11 73.6 44 84.1
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.1e-11 73.6 45 84.4
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.4e-11 73.2 41 85.4
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.8e-11 72.8 41 87.8
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 2.3e-11 72.4 41 87.8
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 3.1e-11 72.0 41 85.4
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 3.1e-11 72.0 41 87.8
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 4.0e-11 71.6 41 85.4
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 4.0e-11 71.6 41 85.4
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.0e-11 71.6 41 87.8
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 5.2e-11 71.2 49 79.6
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 8.9e-11 70.5 46 78.3
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.2e-10 70.1 40 85.0
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 1.2e-10 70.1 41 82.9
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.2e-10 70.1 41 85.4
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.2e-10 70.1 41 85.4
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.5e-10 69.7 42 83.3
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 1.5e-10 69.7 45 77.8
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 2.0e-10 69.3 41 85.4
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 2.6e-10 68.9 41 80.5
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.6e-10 68.9 41 85.4
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.8e-10 67.8 41 82.9
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 9.9e-10 67.0 41 85.4
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.3e-09 66.6 51 66.7
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.3e-09 66.6 49 73.5
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.7e-09 66.2 39 84.6
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 2.2e-09 65.9 41 78.0
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 8.4e-09 63.9 47 70.2
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.1e-08 63.5 41 78.0
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.4e-08 63.2 35 88.6
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 1.9e-08 62.8 35 88.6
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 2.4e-08 62.4 38 81.6
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 2.4e-08 62.4 36 86.1
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 3.2e-08 62.0 94 43.6
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 4.1e-08 61.6 39 79.5
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 7.1e-08 60.8 31 96.8
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 1.2e-07 60.1 31 93.5
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 1.6e-07 59.7 34 82.4
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 2.1e-07 59.3 31 93.5
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.1e-07 59.3 38 78.9
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 3.5e-07 58.5 30 96.7
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 3.5e-07 58.5 31 90.3
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 4.6e-07 58.2 31 90.3
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 4.6e-07 58.2 37 81.1
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 6.0e-07 57.8 32 84.4
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 6.0e-07 57.8 31 90.3
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 7.8e-07 57.4 31 87.1
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 7.8e-07 57.4 31 87.1
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 7.8e-07 57.4 31 87.1
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 1.0e-06 57.0 32 84.4
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.0e-06 57.0 32 90.6
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.7e-06 56.2 33 87.9
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 1.7e-06 56.2 31 87.1
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 2.3e-06 55.8 27 100.0
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 2.3e-06 55.8 27 100.0
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 5.1e-06 54.7 38 76.3
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.1e-06 54.7 30 90.0
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 6.6e-06 54.3 46 69.6
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 6.6e-06 54.3 31 87.1
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 6.6e-06 54.3 39 71.8
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 6.6e-06 54.3 37 73.0
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 8.6e-06 53.9 31 83.9
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 8.6e-06 53.9 31 83.9
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 8.6e-06 53.9 39 74.4


User provided reference genes

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