Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p26660 Brassica napus HOM05D004788 ORTHO05D030769 1.0e-30 136.0 61 100.0
BolC8t47937H Brassica oleracea HOM05D004788 ORTHO05D030769 4.1e-24 114.0 56 92.9
Aa31LG5G7350 Aethionema arabicum HOM05D004788 ORTHO05D006465 9.4e-13 76.3 54 64.8
AL4G23410 Arabidopsis lyrata HOM05D004788 ORTHO05D006465 1.6e-12 75.5 54 63.0
AT2G28880 Arabidopsis thaliana HOM05D004788 ORTHO05D006465 1.6e-12 75.5 54 63.0
BcaB02g10208 Brassica carinata HOM05D004788 ORTHO05D006465 1.6e-12 75.5 54 63.0
BcaC02g11019 Brassica carinata HOM05D004788 ORTHO05D006465 1.6e-12 75.5 54 63.0
Carub.0004s0987 Capsella rubella HOM05D004788 ORTHO05D006465 3.6e-12 74.3 54 63.0
Thhalv10016200m.g Eutrema salsugineum HOM05D004788 ORTHO05D006465 3.6e-12 74.3 54 63.0
BcaB06g28261 Brassica carinata HOM05D004788 ORTHO05D006465 4.6e-12 73.9 54 61.1
BcaC02g08128 Brassica carinata HOM05D004788 ORTHO05D006465 4.6e-12 73.9 38 81.6
A04p21930 Brassica napus HOM05D004788 ORTHO05D006465 4.6e-12 73.9 38 81.6
A07p19340 Brassica napus HOM05D004788 ORTHO05D006465 4.6e-12 73.9 38 81.6
C04p22120 Brassica napus HOM05D004788 ORTHO05D006465 4.6e-12 73.9 38 81.6
C04p58070 Brassica napus HOM05D004788 ORTHO05D006465 4.6e-12 73.9 38 81.6
BolC4t23734H Brassica oleracea HOM05D004788 ORTHO05D006465 4.6e-12 73.9 38 81.6
BolC4t27333H Brassica oleracea HOM05D004788 ORTHO05D006465 4.6e-12 73.9 38 81.6
BraA04t17760Z Brassica rapa HOM05D004788 ORTHO05D006465 4.6e-12 73.9 38 81.6
Sp4g11690 Schrenkiella parvula HOM05D004788 ORTHO05D006465 4.6e-12 73.9 38 81.6
PSO063G3786 Papaver somniferum HOM05D004788 ORTHO05D006465 2.0e-10 68.6 44 68.2
PSO170G4427 Papaver somniferum HOM05D004788 ORTHO05D006465 2.0e-10 68.6 44 68.2
MBI13_g34045_MAGBIO Magnolia biondii HOM05D004788 ORTHO05D006465 2.6e-10 68.2 38 76.3
CAN.G4.2 Capsicum annuum HOM05D004788 ORTHO05D006465 3.3e-10 67.8 38 76.3
AagrBONN_evm.TU.Sc2ySwM_368.18 Anthoceros agrestis HOM05D004788 ORTHO05D006465 7.4e-10 66.6 38 73.7
AagrBONN_evm.TU.Sc2ySwM_368.2427 Anthoceros agrestis HOM05D004788 ORTHO05D006465 7.4e-10 66.6 38 73.7
Aqoxy7G02809 Aquilegia oxysepala HOM05D004788 ORTHO05D006465 7.4e-10 66.6 38 71.1
arahy.Tifrunner.gnm1.ann1.6SV6NI Arachis hypogaea HOM05D004788 ORTHO05D006465 7.4e-10 66.6 38 68.4
arahy.Tifrunner.gnm1.ann1.CYD8BJ Arachis hypogaea HOM05D004788 ORTHO05D006465 7.4e-10 66.6 38 68.4
arahy.Tifrunner.gnm1.ann1.L4RTFU Arachis hypogaea HOM05D004788 ORTHO05D006465 7.4e-10 66.6 38 68.4
arahy.Tifrunner.gnm1.ann1.M3N3P9 Arachis hypogaea HOM05D004788 ORTHO05D006465 7.4e-10 66.6 38 68.4
Lj5g0009066 Lotus japonicus HOM05D004788 ORTHO05D006465 7.4e-10 66.6 38 71.1
SEGI_34163 Sequoiadendron giganteum HOM05D004788 ORTHO05D006465 7.4e-10 66.6 38 76.3
Solyc04g049360.3 Solanum lycopersicum HOM05D004788 ORTHO05D006465 7.4e-10 66.6 46 63.0
Sopen04g019320 Solanum pennellii HOM05D004788 ORTHO05D006465 7.4e-10 66.6 46 63.0
Ah.12g052940 Amaranthus hybridus HOM05D004788 ORTHO05D006465 9.7e-10 66.2 60 50.0
CDE05G0857 Ceratophyllum demersum HOM05D004788 ORTHO05D006465 9.7e-10 66.2 44 61.4
ClCG05G020950 Citrullus lanatus HOM05D004788 ORTHO05D006465 9.7e-10 66.2 54 59.3
CsaV3_5G036360 Cucumis sativus L. HOM05D004788 ORTHO05D006465 9.7e-10 66.2 54 59.3
MD01G1109300 Malus domestica HOM05D004788 ORTHO05D006465 9.7e-10 66.2 38 73.7
Sed0008505 Sechium edule HOM05D004788 ORTHO05D006465 9.7e-10 66.2 54 59.3
ATR0626G067 Amborella trichopoda HOM05D004788 ORTHO05D006465 1.3e-09 65.9 38 73.7
BcaC09g50322 Brassica carinata HOM05D004788 ORTHO05D017669 1.3e-09 65.9 28 100.0
MELO3C012434.2 Cucumis melo HOM05D004788 ORTHO05D006465 1.3e-09 65.9 54 59.3
Migut.F01772 Erythranthe guttata HOM05D004788 ORTHO05D006465 1.3e-09 65.9 38 68.4
TWI38G1549 Tripterygium wilfordii HOM05D004788 ORTHO05D006465 1.3e-09 65.9 38 68.4
CiPaw.02G174400 Carya illinoinensis HOM05D004788 ORTHO05D006465 1.7e-09 65.5 46 63.0
Glyma.10G211600 Glycine max HOM05D004788 ORTHO05D006465 1.7e-09 65.5 54 53.7
Nn8g40780 Nelumbo nucifera HOM05D004788 ORTHO05D006465 1.7e-09 65.5 38 73.7
PGR142G2437 Punica granatum HOM05D004788 ORTHO05D006465 1.7e-09 65.5 38 76.3
Atru.chr12.738 Acer truncatum HOM05D004788 ORTHO05D030769 2.2e-09 65.1 34 79.4
TAR626G1809 Trochodendron aralioides HOM05D004788 ORTHO05D006465 2.2e-09 65.1 38 73.7
Peaxi162Scf00747g00211 Petunia axillaris HOM05D004788 ORTHO05D006465 2.8e-09 64.7 38 73.7
Phvul.007G094100 Phaseolus vulgaris HOM05D004788 ORTHO05D006465 2.8e-09 64.7 54 51.9
VMungo0720G1279 Vigna mungo HOM05D004788 ORTHO05D006465 2.8e-09 64.7 54 51.9
Oeu043947.4 Olea europaea HOM05D004788 ORTHO05D006465 3.7e-09 64.3 45 64.4
SalBow5G2521 Salvia bowleyana HOM05D004788 ORTHO05D006465 3.7e-09 64.3 38 65.8
SGA_v2.0_scaffold341G49365 Striga asiatica HOM05D004788 ORTHO05D006465 3.7e-09 64.3 38 68.4
Lalb_Chr02g0142131 Lupinus albus HOM05D004788 ORTHO05D006465 4.8e-09 63.9 38 71.1
Manes.07G101300 Manihot esculenta HOM05D004788 ORTHO05D006465 4.8e-09 63.9 45 60.0
Medtr1g095360 Medicago truncatula HOM05D004788 ORTHO05D006465 4.8e-09 63.9 38 71.1
RcHm_v2.0_Chr1g0363521 Rosa chinensis HOM05D004788 ORTHO05D006465 4.8e-09 63.9 38 73.7
AUR62019882 Chenopodium quinoa HOM05D004788 ORTHO05D006465 6.3e-09 63.5 38 68.4
Ca_10574_v3 Cicer arietinum L. HOM05D004788 ORTHO05D006465 6.3e-09 63.5 38 68.4
Ca_29597_v3 Cicer arietinum L. HOM05D004788 ORTHO05D006465 6.3e-09 63.5 38 68.4
MD07G1175300 Malus domestica HOM05D004788 ORTHO05D006465 6.3e-09 63.5 38 73.7
TPR.G1941 Trifolium pratense HOM05D004788 ORTHO05D006465 6.3e-09 63.5 38 68.4
DCAR_015314 Daucus carota HOM05D004788 ORTHO05D006465 8.2e-09 63.2 38 71.1
Glyma.20G179400 Glycine max HOM05D004788 ORTHO05D006465 8.2e-09 63.2 38 65.8
Gohir.D10G214700 Gossypium hirsutum HOM05D004788 ORTHO05D006465 8.2e-09 63.2 54 51.9
Gorai.011G240300 Gossypium raimondii HOM05D004788 ORTHO05D006465 8.2e-09 63.2 54 51.9
GSVIVG01016291001 Vitis vinifera HOM05D004788 ORTHO05D006465 8.2e-09 63.2 38 71.1
CSS0002233 Camellia sinensis var. sinensis HOM05D004788 ORTHO05D006465 1.1e-08 62.8 38 71.1
CSS0028648 Camellia sinensis var. sinensis HOM05D004788 ORTHO05D006465 1.1e-08 62.8 38 71.1
Ciclev10030655m.g Citrus clementina HOM05D004788 ORTHO05D006465 1.1e-08 62.8 45 60.0
FvH4_7g19690 Fragaria vesca HOM05D004788 ORTHO05D006465 1.1e-08 62.8 38 71.1
FAN06G3031 Fragaria x ananassa HOM05D004788 ORTHO05D006465 1.1e-08 62.8 38 71.1
Lj1C915G0 Lonicera japonica HOM05D004788 ORTHO05D006465 1.1e-08 62.8 38 68.4
QL08p056120 Quercus lobata HOM05D004788 ORTHO05D006465 1.1e-08 62.8 38 71.1
Potri.010G221500 Populus trichocarpa HOM05D004788 ORTHO05D006465 1.4e-08 62.4 38 71.1
Sabra10G0171400 Salix brachista HOM05D004788 ORTHO05D006465 1.4e-08 62.4 38 71.1
COL.COLO4_23692 Corchorus olitorius HOM05D004788 ORTHO05D006465 1.8e-08 62.0 44 59.1
Psat6g184480 Pisum sativum HOM05D004788 ORTHO05D006465 1.8e-08 62.0 38 68.4
Rhsim09G0110900 Rhododendron simsii HOM05D004788 ORTHO05D006465 1.8e-08 62.0 38 71.1
Thecc.10G072500 Theobroma cacao HOM05D004788 ORTHO05D006465 1.8e-08 62.0 44 59.1
Hma1.2p1_0030F.1_g018320 Hydrangea macrophylla HOM05D004788 ORTHO05D006465 2.4e-08 61.6 38 68.4
Hma1.2p1_0030F.1_g018330 Hydrangea macrophylla HOM05D004788 ORTHO05D006465 2.4e-08 61.6 38 68.4
ECA232G0614 Erigeron canadensis HOM05D004788 ORTHO05D006465 3.1e-08 61.2 38 68.4
Lsat_1_v5_gn_4_181581 Lactuca sativa HOM05D004788 ORTHO05D006465 3.1e-08 61.2 38 71.1
Pp3c26_2070 Physcomitrium patens HOM05D004788 ORTHO05D006465 3.1e-08 61.2 34 79.4
Prupe.2G214500 Prunus persica HOM05D004788 ORTHO05D006465 3.1e-08 61.2 38 71.1
HanXRQChr08g0208591 Helianthus annuus HOM05D004788 ORTHO05D006465 4.1e-08 60.8 38 68.4
unitig_60.g25702 Utricularia gibba HOM05D004788 ORTHO05D006465 4.1e-08 60.8 38 65.8
Cpa.g.sc53.70 Carica papaya HOM05D004788 ORTHO05D006465 5.3e-08 60.5 38 68.4
Gohir.A10G206600 Gossypium hirsutum HOM05D004788 ORTHO05D006465 5.3e-08 60.5 54 50.0
CANSAT25G2619 Cannabis sativa HOM05D004788 ORTHO05D006465 6.9e-08 60.1 38 68.4
Duzib128G1556 Durio zibethinus HOM05D004788 ORTHO05D006465 6.9e-08 60.1 44 56.8
Mapoly0009s0140 Marchantia polymorpha HOM05D004788 ORTHO05D006465 9.1e-08 59.7 34 73.5
GSVIVG01016290001 Vitis vinifera HOM05D004788 ORTHO05D006465 9.1e-08 59.7 38 60.5
Actinidia16628 Actinidia chinensis HOM05D004788 ORTHO05D006465 2.0e-07 58.5 38 65.8
CBR_g2786 Chara braunii HOM05D004788 ORTHO05D006465 4.5e-07 57.4 32 75.0
HPP92_010286 Vanilla planifolia HOM05D004788 ORTHO05D006465 5.9e-07 57.0 45 57.8
Cc09_g02020 Coffea canephora HOM05D004788 ORTHO05D006465 2.9e-06 54.7 33 69.7
PRCOL_00000505 Prasinoderma coloniale HOM05D004788 ORTHO05D006465 3.8e-06 54.3 44 56.8
SMO356G0457 Selaginella moellendorffii HOM05D004788 ORTHO05D006465 8.5e-06 53.1 36 63.9


User provided reference genes

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