Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 5.3e-273 943.7 468 100.0
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.3e-268 929.1 468 98.3
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 6.7e-268 926.8 468 98.3
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 6.7e-268 926.8 468 98.3
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 6.9e-265 916.8 468 96.6
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 6.9e-265 916.8 492 93.7
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 8.8e-252 873.2 468 91.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.2e-248 862.8 468 89.7
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 4.7e-245 850.9 476 88.0
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 6.7e-244 847.0 476 87.6
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.7e-239 832.4 472 86.9
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 8.0e-237 823.5 477 85.3
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.0e-231 806.6 473 82.9
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 6.6e-207 724.2 480 73.3
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 9.5e-206 720.3 480 72.7
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 6.1e-205 717.6 480 72.9
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 8.9e-204 713.8 480 73.1
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 3.4e-203 711.8 479 72.9
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 3.7e-202 708.4 480 72.5
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.4e-201 705.7 480 72.5
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.6e-200 703.0 481 70.7
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.0e-200 702.6 480 71.0
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 6.0e-200 701.0 480 70.4
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.7e-199 699.5 480 71.5
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.7e-199 699.5 485 71.8
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 8.6e-199 697.2 478 71.5
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.3e-198 694.9 474 71.7
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 5.6e-198 694.5 479 69.9
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 5.6e-198 694.5 479 69.9
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 7.3e-198 694.1 481 70.3
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 2.1e-197 692.6 481 69.2
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.1e-197 692.6 480 69.6
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 2.8e-197 692.2 480 69.8
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.2e-197 691.0 480 70.0
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.4e-196 689.9 482 69.3
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.4e-196 689.9 473 70.8
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 4.0e-196 688.3 482 70.1
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 6.8e-196 687.6 475 70.7
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 8.9e-196 687.2 486 70.0
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 2.0e-195 686.0 481 69.6
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 3.4e-195 685.3 507 66.9
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.4e-195 684.9 492 69.1
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.3e-194 683.3 484 69.2
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.3e-194 683.3 482 70.7
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.7e-194 682.9 477 70.2
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 6.4e-194 681.0 479 69.9
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.3e-194 680.6 477 69.8
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 4.1e-193 678.3 484 69.2
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 7.0e-193 677.6 481 67.8
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 4.6e-192 674.9 483 67.9
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 7.8e-192 674.1 481 68.6
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 2.3e-191 672.5 480 67.9
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 3.9e-191 671.8 481 68.6
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 6.6e-191 671.0 481 68.8
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 8.6e-191 670.6 484 68.6
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-190 670.2 485 69.3
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 1.1e-190 670.2 481 68.4
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 1.1e-190 670.2 481 68.2
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 2.5e-190 669.1 473 70.0
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.5e-190 669.1 477 68.3
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 9.5e-190 667.2 481 68.2
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 9.5e-190 667.2 480 67.9
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.2e-189 666.8 482 67.2
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 2.1e-189 666.0 474 68.8
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.8e-189 665.6 496 66.9
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 3.6e-189 665.2 476 67.2
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 3.6e-189 665.2 481 68.2
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 4.7e-189 664.8 486 66.9
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 4.7e-189 664.8 481 68.8
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 6.2e-189 664.5 481 68.4
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.8e-188 662.9 480 67.7
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.2e-188 661.4 481 68.2
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 6.8e-188 661.0 474 67.5
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 8.9e-188 660.6 474 68.6
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 3.4e-187 658.7 474 67.7
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 7.5e-187 657.5 475 67.6
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 2.2e-186 656.0 474 67.1
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 2.2e-186 656.0 474 67.3
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 5.4e-185 651.4 474 68.1
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 9.2e-185 650.6 516 64.1
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 9.2e-185 650.6 474 67.3
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 9.2e-185 650.6 474 66.2
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.1e-184 649.4 508 63.2
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 6.0e-184 647.9 474 66.7
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.0e-183 647.1 488 66.4
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.3e-183 646.7 494 64.8
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.7e-183 646.4 476 67.2
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 5.1e-183 644.8 488 65.8
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 9.5e-182 640.6 473 66.6
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 9.5e-182 640.6 472 65.5
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.2e-181 640.2 567 58.2
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.2e-181 640.2 428 72.2
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.1e-180 637.1 474 67.3
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 5.2e-180 634.8 471 65.4
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 9.9e-179 630.6 470 65.1
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 9.9e-179 630.6 445 69.0
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.3e-178 630.2 458 69.0
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.3e-178 630.2 482 64.3
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 3.8e-178 628.6 488 65.0
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 4.2e-177 625.2 489 64.8
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 3.5e-176 622.1 487 62.6
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.0e-175 620.5 416 70.2
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.7e-175 619.8 475 65.1
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.6e-173 613.2 427 69.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.4e-169 600.1 512 61.7
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.2e-169 598.6 488 61.9
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.7e-168 595.9 428 67.8
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 1.6e-165 586.6 470 62.3
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.8e-165 585.1 416 68.0
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.4e-164 583.6 475 62.7
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 5.1e-159 565.1 487 58.1
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.1e-158 563.9 483 61.1
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 3.7e-157 558.9 475 58.7
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 2.9e-154 549.3 553 54.8
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 7.4e-150 534.6 412 65.8
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.0e-143 512.7 355 71.8
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 7.7e-139 498.0 414 61.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.8e-135 486.9 487 54.6
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 3.2e-129 466.1 480 51.5
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.8e-101 373.2 597 39.5
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 3.8e-98 362.8 253 66.0
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 1.9e-97 360.5 518 43.1
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 3.9e-90 336.3 249 66.7
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 2.0e-86 323.9 533 39.0
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 4.6e-83 312.8 210 75.7
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.3e-74 284.6 210 63.8
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.0e-74 283.5 183 69.4
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 9.2e-68 261.9 250 52.8
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.5e-65 254.6 381 43.3
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 8.9e-63 245.4 185 73.0
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.4e-60 238.0 183 61.2
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 5.6e-57 226.1 474 34.8
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.3e-55 219.5 251 46.6
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 7.6e-46 189.1 438 33.3
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 3.0e-42 177.2 172 53.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.3e-41 173.7 368 33.4
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 6.2e-40 169.5 489 28.8
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.1e-39 167.2 443 28.4
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-31 142.1 212 42.9
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.8e-26 124.8 170 40.6
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.6e-19 101.7 183 40.4
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.4e-15 87.8 104 47.1
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.0e-14 84.7 66 65.2
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 5.9e-14 83.2 66 68.2
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 7.7e-14 82.8 66 68.2
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 4.7e-11 73.6 69 53.6
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 3.9e-10 70.5 68 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.0e-09 68.2 83 50.6
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-08 65.1 64 54.7


User provided reference genes

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