Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p25580 Brassica napus HOM05D016273 ORTHO05D019880 8.3e-44 179.9 84 100.0
BolC1t02154H Brassica oleracea HOM05D016273 ORTHO05D106340 1.4e-38 162.5 79 93.7
BcaC09g50697 Brassica carinata HOM05D016273 ORTHO05D019880 1.0e-33 146.4 81 86.4
A10p05650 Brassica napus HOM05D016273 ORTHO05D019880 5.6e-32 140.6 76 89.5
BraA10t42826Z Brassica rapa HOM05D016273 ORTHO05D019880 5.6e-32 140.6 76 89.5
C03p82190 Brassica napus HOM05D016273 ORTHO05D019880 1.2e-31 139.4 76 88.2
BolC3t20533H Brassica oleracea HOM05D016273 ORTHO05D019880 1.2e-31 139.4 76 88.2
C01p22240 Brassica napus HOM05D016273 ORTHO05D019880 4.0e-30 134.4 71 90.1
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 2.1e-10 68.9 87 47.1
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 2.1e-10 68.9 87 47.1
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 2.1e-10 68.9 87 47.1
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 2.1e-10 68.9 87 47.1
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 2.1e-10 68.9 87 48.3
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 2.7e-10 68.6 89 49.4
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 3.5e-10 68.2 89 49.4
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 6.0e-10 67.4 87 47.1
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 6.0e-10 67.4 87 47.1
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 6.0e-10 67.4 87 46.0
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 6.0e-10 67.4 87 46.0
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.3e-09 66.2 89 48.3
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 3.0e-09 65.1 89 47.2
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 9.6e-08 60.1 84 39.3
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 9.6e-08 60.1 87 39.1
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.6e-07 59.3 87 39.1
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.1e-07 58.9 86 40.7
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 3.6e-07 58.2 84 35.7
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 3.6e-07 58.2 86 40.7
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 6.2e-07 57.4 86 40.7
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.2e-07 57.4 86 40.7
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 6.2e-07 57.4 86 40.7
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 8.1e-07 57.0 37 73.0
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 8.1e-07 57.0 84 34.5
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 8.1e-07 57.0 84 36.9
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 8.1e-07 57.0 85 36.5
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.1e-06 56.6 84 36.9
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.1e-06 56.6 87 37.9
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 1.4e-06 56.2 84 36.9
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.4e-06 56.2 84 36.9
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.4e-06 56.2 84 36.9
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 1.4e-06 56.2 84 36.9
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.4e-06 56.2 84 38.1
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.8e-06 55.8 84 36.9
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.8e-06 55.8 84 35.7
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 2.4e-06 55.5 84 38.1
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 2.4e-06 55.5 84 39.3
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.1e-06 55.1 86 39.5
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 3.1e-06 55.1 86 37.2
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 3.1e-06 55.1 89 38.2
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 4.0e-06 54.7 87 36.8
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 5.2e-06 54.3 84 34.5
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 5.2e-06 54.3 84 35.7
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 5.2e-06 54.3 86 38.4
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 5.2e-06 54.3 86 38.4
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 5.2e-06 54.3 42 54.8
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.2e-06 54.3 84 36.9
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.2e-06 54.3 84 36.9
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 5.2e-06 54.3 87 37.9
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 6.9e-06 53.9 83 36.1
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 6.9e-06 53.9 84 35.7
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 6.9e-06 53.9 85 40.0
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 6.9e-06 53.9 86 37.2
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 9.0e-06 53.5 84 35.7
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 9.0e-06 53.5 84 35.7


User provided reference genes

Program Settings