Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.7e-173 612.5 292 100.0
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-173 612.5 292 100.0
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 2.9e-152 542.0 298 89.9
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 4.8e-147 524.6 303 87.5
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-145 519.6 299 86.6
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 8.4e-144 513.8 304 85.5
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 3.2e-143 511.9 304 85.2
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 3.2e-143 511.9 304 85.2
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 4.2e-143 511.5 301 84.4
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 5.5e-143 511.1 302 85.8
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-142 509.6 304 84.2
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.3e-141 506.5 305 84.6
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.3e-141 505.8 301 84.4
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 3.9e-141 505.0 304 84.2
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 7.4e-140 500.7 301 82.7
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 1.3e-139 500.0 301 83.1
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 2.8e-139 498.8 301 82.4
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 6.2e-139 497.7 301 83.4
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.4e-138 495.7 289 86.9
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 8.7e-125 450.7 300 75.0
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 2.2e-123 446.0 314 75.8
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.3e-120 436.8 299 73.2
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 3.8e-120 435.3 299 72.9
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 1.1e-119 433.7 294 73.5
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.4e-119 433.3 299 72.6
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 5.5e-119 431.4 298 73.2
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.2e-118 430.3 301 70.4
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 6.1e-118 427.9 292 70.2
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 1.4e-117 426.8 299 70.9
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.7e-115 419.9 280 73.2
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 2.8e-115 419.1 299 67.6
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 6.3e-115 417.9 296 70.6
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 8.2e-115 417.5 297 68.4
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.1e-114 415.6 297 68.0
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 4.1e-114 415.2 285 70.2
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 4.1e-114 415.2 296 69.3
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 6.9e-114 414.5 299 68.9
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 3.4e-113 412.1 295 68.5
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 4.5e-113 411.8 299 68.6
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.0e-112 410.6 293 68.3
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.0e-112 410.6 297 68.4
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.3e-112 410.2 325 67.7
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.3e-112 410.2 296 68.6
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.3e-112 410.2 284 69.7
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.7e-112 409.8 295 68.1
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 1.7e-112 409.8 286 69.2
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 2.2e-112 409.5 297 68.7
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 3.8e-112 408.7 287 69.3
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 6.5e-112 407.9 299 69.2
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.1e-111 407.1 297 69.7
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 1.4e-111 406.8 293 68.6
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.4e-111 406.8 287 69.0
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 1.4e-111 406.8 287 68.6
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 1.9e-111 406.4 296 67.9
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 4.2e-111 405.2 297 67.7
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.2e-110 403.7 283 68.9
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 1.6e-110 403.3 298 68.5
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 2.7e-110 402.5 303 66.7
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 1.4e-109 400.2 297 66.3
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 1.8e-109 399.8 301 65.8
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 3.0e-109 399.1 300 65.7
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 3.9e-109 398.7 292 66.4
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 6.7e-109 397.9 298 67.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 8.8e-109 397.5 295 65.4
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.5e-108 396.7 291 67.7
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.0e-108 396.4 292 69.2
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.7e-108 394.8 303 66.7
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 5.7e-108 394.8 304 66.1
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 9.7e-108 394.0 298 64.4
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 9.7e-108 394.0 298 64.8
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 2.8e-107 392.5 299 67.6
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 4.8e-107 391.7 261 72.8
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 6.3e-107 391.3 292 66.4
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.4e-106 390.2 296 67.2
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 9.1e-106 387.5 297 63.3
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 5.9e-105 384.8 322 62.1
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.3e-104 383.6 301 64.1
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 2.2e-104 382.9 301 62.8
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 2.9e-104 382.5 285 66.3
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 3.8e-104 382.1 287 67.2
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 1.9e-103 379.8 295 62.7
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 3.2e-103 379.0 317 60.9
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.6e-102 376.7 296 63.2
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 2.1e-102 376.3 301 62.1
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 2.7e-102 375.9 301 62.8
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 2.7e-102 375.9 298 63.1
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 2.0e-100 369.8 281 64.1
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 9.7e-100 367.5 241 73.4
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 9.7e-100 367.5 407 50.4
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 4.8e-99 365.2 274 63.1
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 6.5e-96 354.8 290 62.4
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 8.0e-94 347.8 279 63.4
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 3.0e-93 345.9 289 62.3
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 9.1e-90 334.3 265 63.4
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 5.9e-89 331.6 297 59.3
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 6.5e-88 328.2 274 60.2
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.2e-86 323.9 240 67.1
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 8.8e-85 317.8 279 58.8
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 9.2e-82 307.8 250 62.0
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 2.9e-80 302.8 320 50.6
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 2.5e-79 299.7 213 71.4
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 3.7e-75 285.8 212 68.4
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 5.9e-73 278.5 286 53.5
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 9.5e-71 271.2 244 59.4
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 2.1e-70 270.0 203 66.0
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 2.8e-70 269.6 203 65.0
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 8.0e-70 268.1 258 58.1
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.2e-67 260.0 203 63.5
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.3e-59 234.2 293 47.8
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 3.3e-55 219.5 269 44.2
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 8.9e-53 211.5 175 60.0
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.2e-49 201.1 128 72.7
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 3.0e-48 196.4 261 41.4
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 2.4e-45 186.8 149 63.8
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 2.4e-45 186.8 264 44.7
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 1.7e-40 170.6 108 78.7
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 9.6e-39 164.9 261 39.5
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 4.5e-36 156.0 288 40.3
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 1.7e-35 154.1 93 76.3
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.9e-31 140.6 71 88.7
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.6e-30 137.5 65 90.8
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 5.3e-29 132.5 65 84.6
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 9.6e-23 111.7 162 43.8
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.9e-16 89.7 67 64.2
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 1.1e-15 88.2 59 69.5
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 5.7e-07 59.3 57 56.1
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 3.7e-06 56.6 37 75.7
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 8.2e-06 55.5 35 71.4


User provided reference genes

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