Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.2e-189 666.4 338 100.0
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.2e-189 666.4 338 100.0
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 3.8e-188 661.4 338 99.1
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 5.5e-187 657.5 337 98.5
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 3.0e-185 651.7 333 99.1
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 6.2e-183 644.0 336 95.8
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 4.9e-180 634.4 336 94.3
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 9.0e-166 587.0 337 89.6
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 9.0e-166 587.0 304 96.1
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 3.6e-162 575.1 337 86.1
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 8.8e-161 570.5 321 87.5
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 3.3e-160 568.5 342 83.9
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 3.3e-160 568.5 337 84.6
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.8e-158 562.8 318 87.7
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 4.5e-157 558.1 333 83.8
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.9e-156 555.4 338 81.7
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 8.5e-156 553.9 337 81.3
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 3.2e-155 552.0 337 81.3
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 4.2e-155 551.6 321 83.5
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 7.2e-155 550.8 337 81.0
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 4.7e-154 548.1 337 79.5
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 2.3e-153 545.8 333 80.8
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 3.0e-153 545.4 321 82.2
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 5.2e-153 544.7 320 82.8
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.5e-152 543.1 339 79.9
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 3.3e-152 542.0 338 79.9
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 3.3e-152 542.0 334 81.4
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 5.7e-152 541.2 339 79.6
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 7.4e-152 540.8 338 79.6
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 2.8e-151 538.9 338 79.0
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.8e-151 538.9 338 79.0
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 3.7e-151 538.5 319 83.1
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.4e-150 536.6 316 82.3
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.8e-150 536.2 338 78.1
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.4e-150 535.8 321 81.3
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 7.0e-150 534.3 322 81.4
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 3.5e-149 531.9 338 78.1
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 5.9e-149 531.2 323 79.9
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 5.9e-149 531.2 337 77.7
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 7.7e-149 530.8 337 77.4
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.7e-148 529.6 337 78.0
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 2.2e-148 529.3 338 78.1
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 2.9e-148 528.9 336 77.7
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 2.9e-148 528.9 338 78.4
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 5.0e-148 528.1 338 77.8
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.1e-147 526.9 339 79.1
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 3.2e-147 525.4 324 78.4
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 5.5e-147 524.6 338 76.6
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.6e-146 523.1 338 76.6
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.7e-146 522.3 338 76.3
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.7e-146 522.3 374 71.4
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 4.7e-146 521.5 337 77.2
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 6.1e-146 521.2 340 76.8
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.0e-145 520.4 323 77.7
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.4e-145 520.0 341 76.0
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-145 520.0 337 76.9
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.0e-145 518.8 336 77.1
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 3.0e-145 518.8 337 77.2
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 6.7e-145 517.7 341 76.8
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 6.7e-145 517.7 319 79.9
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.6e-144 515.8 318 77.7
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 3.3e-144 515.4 318 77.7
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 3.3e-144 515.4 329 77.5
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 9.7e-144 513.8 338 76.0
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.3e-143 513.5 320 78.4
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 2.2e-143 512.7 324 76.2
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 8.2e-143 510.8 338 75.4
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-142 510.4 350 74.0
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.8e-142 509.6 336 75.9
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 2.4e-142 509.2 334 73.4
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 7.0e-142 507.7 374 69.8
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 9.1e-142 507.3 341 73.3
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 2.0e-141 506.1 378 69.3
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.0e-141 506.1 327 74.9
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 2.0e-141 506.1 339 73.5
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.5e-141 505.4 350 73.7
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 4.5e-141 505.0 317 78.9
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.3e-140 503.4 315 78.1
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 2.2e-140 502.7 320 76.6
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 3.8e-140 501.9 381 68.2
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.1e-139 500.4 339 72.9
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.1e-139 500.4 320 75.3
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 2.5e-139 499.2 337 74.5
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 7.2e-139 497.7 329 76.3
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 9.4e-139 497.3 329 76.3
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.2e-138 496.9 320 74.7
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 8.8e-137 490.7 335 73.1
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.5e-136 490.0 407 65.1
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.8e-135 485.7 338 72.8
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 3.7e-135 485.3 337 72.4
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 8.3e-135 484.2 324 75.6
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 7.7e-133 477.6 318 72.6
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 9.5e-131 470.7 316 70.9
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.4e-126 456.1 337 69.1
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 3.1e-126 455.7 350 65.1
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.9e-123 446.4 349 64.8
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 9.5e-123 444.1 332 67.5
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 4.0e-121 438.7 344 64.2
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 3.3e-115 419.1 250 81.2
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 9.5e-115 417.5 249 82.7
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.1e-114 416.4 248 79.8
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 3.4e-112 409.1 250 79.2
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 3.2e-110 402.5 243 79.0
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 8.6e-108 394.4 306 64.4
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.7e-106 388.7 325 63.7
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.4e-105 387.1 339 63.7
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.8e-105 386.7 361 59.3
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.7e-103 380.2 324 62.0
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 3.2e-102 375.9 242 75.2
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 9.5e-99 364.4 233 78.5
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 5.8e-96 355.1 316 59.8
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 4.7e-90 335.5 198 81.3
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 3.4e-72 276.2 226 66.4
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 4.6e-69 265.8 346 44.2
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 4.3e-67 259.2 263 50.2
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.6e-66 257.3 168 72.6
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 5.8e-64 248.8 353 44.5
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 6.7e-60 235.3 134 81.3
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.4e-57 227.6 136 78.7
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 2.0e-56 223.8 234 49.6
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 4.6e-53 212.6 130 77.7
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-36 157.9 137 62.8
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 3.9e-36 156.4 137 62.0
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-35 154.1 148 52.7
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.4e-35 152.9 139 61.2
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 7.4e-35 152.1 113 67.3
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 9.7e-35 151.8 102 75.5
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-32 144.1 130 60.8
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-32 144.1 130 60.8
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.0e-31 141.7 130 60.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 4.2e-30 136.3 199 46.2
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 5.5e-30 136.0 107 64.5
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 4.7e-29 132.9 72 90.3
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 3.8e-23 113.2 66 89.4
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 4.2e-22 109.8 100 60.0
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 8.0e-21 105.5 60 86.7
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 8.0e-21 105.5 77 64.9
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.0e-19 100.9 208 38.9
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 4.4e-19 99.8 61 80.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 7.5e-19 99.0 67 74.6
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 2.2e-18 97.4 81 64.2
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 4.1e-17 93.2 81 63.0
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 6.1e-13 79.3 50 78.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 6.1e-13 79.3 51 74.5
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.8e-10 70.5 59 61.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 3.3e-06 57.0 55 50.9
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 9.5e-06 55.5 163 29.4


User provided reference genes

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