Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 6.3e-85 317.4 158 100.0
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 6.3e-85 317.4 158 100.0
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 6.9e-84 313.9 158 99.4
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 2.5e-73 278.9 152 93.4
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-72 276.2 158 89.2
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.0e-63 246.9 158 80.4
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 3.0e-63 245.4 157 80.3
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 3.3e-62 241.9 141 88.7
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 3.8e-58 228.4 150 80.7
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 3.8e-58 228.4 150 80.7
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 3.8e-58 228.4 150 80.7
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 5.0e-58 228.0 150 80.7
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-57 226.9 150 80.0
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 3.6e-56 221.9 150 78.0
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 8.0e-56 220.7 149 78.5
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.8e-55 219.5 149 78.5
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 6.7e-55 217.6 149 77.2
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.8e-52 209.5 151 72.8
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.5e-41 173.3 164 57.3
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 2.5e-41 172.6 157 59.9
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 3.6e-40 168.7 150 56.0
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 6.1e-40 167.9 137 64.2
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.4e-39 166.8 159 57.9
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.4e-39 166.8 154 59.7
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.8e-39 166.4 157 59.9
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.3e-39 166.0 155 58.1
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 5.2e-39 164.9 148 58.8
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 5.2e-39 164.9 148 58.8
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 6.8e-39 164.5 160 57.5
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 6.8e-39 164.5 160 57.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 8.8e-39 164.1 155 58.7
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 8.8e-39 164.1 139 62.6
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 2.0e-38 162.9 157 57.3
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 3.4e-38 162.2 152 57.2
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.7e-38 161.4 129 62.8
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 7.5e-38 161.0 152 56.6
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 7.5e-38 161.0 152 57.9
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 7.5e-38 161.0 147 57.1
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 7.5e-38 161.0 148 59.5
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-37 160.2 151 58.9
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.7e-37 159.8 131 63.4
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.2e-37 159.5 155 54.8
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 2.2e-37 159.5 160 55.6
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.2e-37 159.5 143 56.6
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 3.7e-37 158.7 152 57.2
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 3.7e-37 158.7 152 55.9
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 4.9e-37 158.3 147 55.8
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 6.3e-37 157.9 157 58.6
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 6.3e-37 157.9 157 58.6
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 8.3e-37 157.5 152 56.6
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 9.2e-36 154.1 147 56.5
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 2.0e-35 152.9 128 61.7
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 5.9e-35 151.4 138 57.2
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.7e-34 149.8 126 59.5
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 8.0e-32 141.0 149 54.4
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.5e-27 125.6 148 47.3
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.3e-26 123.6 133 48.9
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.7e-26 123.2 132 47.7
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.3e-26 122.9 90 65.6
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 8.6e-26 120.9 136 47.1
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.5e-25 119.4 171 41.5
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 7.3e-25 117.9 132 46.2
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 9.5e-25 117.5 133 46.6
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.2e-24 117.1 133 45.9
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.6e-24 116.7 132 46.2
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 1.6e-24 116.7 140 44.3
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.8e-24 115.9 132 45.5
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 2.8e-24 115.9 132 50.0
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 2.8e-24 115.9 131 46.6
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.6e-24 115.5 140 42.9
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 3.6e-24 115.5 155 43.9
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 4.7e-24 115.2 133 45.9
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.0e-24 114.4 141 40.4
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 1.0e-23 114.0 164 42.7
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.8e-23 113.2 137 44.5
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.3e-23 112.8 139 45.3
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.1e-23 112.5 164 40.9
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.0e-23 112.1 126 46.8
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 4.0e-23 112.1 135 46.7
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 4.0e-23 112.1 134 41.0
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 5.2e-23 111.7 173 38.2
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 5.2e-23 111.7 136 44.1
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 6.8e-23 111.3 137 43.8
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.8e-23 111.3 172 38.4
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 6.8e-23 111.3 136 44.1
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 8.9e-23 110.9 139 41.7
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.2e-22 110.5 133 46.6
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.5e-22 110.2 156 40.4
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.5e-22 110.2 137 43.1
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.5e-22 110.2 170 39.4
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 1.5e-22 110.2 130 44.6
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.5e-22 110.2 134 44.8
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.6e-22 109.4 133 43.6
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.6e-22 109.4 133 43.6
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 3.4e-22 109.0 151 39.1
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 3.4e-22 109.0 146 41.1
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 4.4e-22 108.6 148 39.9
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 4.4e-22 108.6 132 49.2
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 5.8e-22 108.2 166 44.0
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 7.5e-22 107.8 135 43.7
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 9.8e-22 107.5 140 44.3
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.3e-21 107.1 182 36.3
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.3e-21 107.1 135 41.5
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.7e-21 106.7 136 44.1
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.7e-21 106.7 137 40.9
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.7e-21 106.7 137 40.9
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 2.9e-21 105.9 137 43.1
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 2.9e-21 105.9 158 40.5
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.9e-21 105.9 164 39.0
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 3.7e-21 105.5 138 42.8
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.7e-21 105.5 136 44.1
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 3.7e-21 105.5 139 43.9
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 4.9e-21 105.1 128 44.5
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 4.9e-21 105.1 160 40.0
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 4.9e-21 105.1 129 45.0
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 8.3e-21 104.4 145 41.4
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.1e-20 104.0 133 42.9
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.4e-20 103.6 146 37.7
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-20 103.6 134 41.8
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.4e-20 103.6 172 36.6
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.4e-20 102.8 139 45.3
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 2.4e-20 102.8 133 44.4
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 3.2e-20 102.4 136 43.4
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 3.2e-20 102.4 136 43.4
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 3.2e-20 102.4 158 38.0
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 3.2e-20 102.4 136 43.4
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 4.1e-20 102.1 165 37.6
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 4.1e-20 102.1 142 42.3
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 5.4e-20 101.7 137 43.1
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 1.2e-19 100.5 124 44.4
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.2e-19 100.5 133 42.1
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.6e-19 100.1 132 40.2
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.6e-19 100.1 133 39.8
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.0e-19 99.8 135 40.7
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 3.5e-19 99.0 130 42.3
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 3.5e-19 99.0 136 42.6
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 3.5e-19 99.0 140 40.7
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 4.6e-19 98.6 139 42.4
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 7.8e-19 97.8 136 41.2
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 7.8e-19 97.8 141 40.4
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 7.8e-19 97.8 129 46.5
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.0e-18 97.4 137 38.0
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 1.0e-18 97.4 129 41.9
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.0e-18 97.4 133 42.9
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.0e-18 97.4 129 46.5
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-18 97.1 81 59.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.3e-18 97.1 143 39.9
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.7e-18 96.7 124 44.4
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.7e-18 96.7 152 38.8
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 3.0e-18 95.9 161 37.9
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 3.0e-18 95.9 186 36.0
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 3.9e-18 95.5 123 43.9
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 3.9e-18 95.5 131 38.2
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 3.9e-18 95.5 133 42.1
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 3.9e-18 95.5 142 36.6
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.9e-18 95.5 153 39.9
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 5.0e-18 95.1 126 43.7
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 5.0e-18 95.1 138 40.6
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 8.6e-18 94.4 131 46.6
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.9e-17 93.2 142 37.3
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 3.3e-17 92.4 136 37.5
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 3.3e-17 92.4 142 35.2
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.2e-16 90.5 136 37.5
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 2.1e-16 89.7 146 35.6
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 3.6e-16 89.0 136 36.8
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 8.1e-16 87.8 150 37.3
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.8e-15 86.7 130 40.8
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.3e-15 86.3 135 37.8
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 4.0e-15 85.5 92 45.7
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.0e-15 85.5 127 39.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 4.0e-15 85.5 136 39.7
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.2e-14 84.0 92 42.4
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 9.8e-14 80.9 181 31.5
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.9e-12 76.6 92 42.4
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 7.1e-12 74.7 167 32.9
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.2e-11 73.9 147 35.4
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.7e-11 72.8 125 34.4
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 3.0e-10 69.3 91 37.4
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 1.1e-07 60.8 63 52.4
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 1.8e-07 60.1 94 39.4
Solyc02g089250.4 Solanum lycopersicum HOM05D003328 ORTHO05D003722 7.6e-06 54.7 96 32.3
PGSC0003DMG400001380 Solanum tuberosum HOM05D003328 ORTHO05D003722 9.9e-06 54.3 96 32.3


User provided reference genes

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