Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p25240 Brassica napus HOM05D050009 ORTHO05D042842 1.7e-60 235.7 114 100.0
BolC1t02474H Brassica oleracea HOM05D050009 ORTHO05D042842 5.6e-27 124.4 59 94.9
BcaC06g33545 Brassica carinata HOM05D000919 ORTHO05D001187 7.9e-13 77.4 51 84.3
BcaNung03468 Brassica carinata HOM05D000919 ORTHO05D001187 7.9e-13 77.4 51 84.3
A03p50380 Brassica napus HOM05D000919 ORTHO05D001187 7.9e-13 77.4 51 84.3
C07p48700 Brassica napus HOM05D000919 ORTHO05D001187 7.9e-13 77.4 51 84.3
BolC7t45377H Brassica oleracea HOM05D000919 ORTHO05D001187 7.9e-13 77.4 51 84.3
BraA03t14128Z Brassica rapa HOM05D000919 ORTHO05D001187 7.9e-13 77.4 51 84.3
Sp7g16900 Schrenkiella parvula HOM05D000919 ORTHO05D001187 1.0e-12 77.0 69 69.6
CARHR223900 Cardamine hirsuta HOM05D000919 ORTHO05D001187 1.8e-12 76.3 51 82.4
A01p20090 Brassica napus HOM05D000919 ORTHO05D001187 2.3e-12 75.9 51 84.3
BraA01t01933Z Brassica rapa HOM05D000919 ORTHO05D001187 2.3e-12 75.9 51 84.3
Thhalv10025583m.g Eutrema salsugineum HOM05D000919 ORTHO05D001187 5.1e-12 74.7 68 67.6
AT4G17270 Arabidopsis thaliana HOM05D000919 ORTHO05D001187 1.1e-11 73.6 51 78.4
Carub.0007s2412 Capsella rubella HOM05D000919 ORTHO05D001187 1.1e-11 73.6 51 80.4
AL7G37430 Arabidopsis lyrata HOM05D000919 ORTHO05D001187 1.5e-11 73.2 51 78.4
Aa31sc118G110 Aethionema arabicum HOM05D000919 ORTHO05D001187 6.2e-10 67.8 51 70.6
Carub.0008s0024 Capsella rubella HOM05D000919 ORTHO05D001187 6.2e-10 67.8 68 61.8
Thhalv10000952m.g Eutrema salsugineum HOM05D000919 ORTHO05D001187 6.2e-10 67.8 51 70.6
THA.LOC104798372 Tarenaya hassleriana HOM05D000919 ORTHO05D001187 6.2e-10 67.8 51 72.5
AL8G10430 Arabidopsis lyrata HOM05D000919 ORTHO05D001187 8.1e-10 67.4 51 70.6
BcaB07g30772 Brassica carinata HOM05D000919 ORTHO05D001187 1.4e-09 66.6 53 66.0
BcaC03g16969 Brassica carinata HOM05D000919 ORTHO05D001187 1.8e-09 66.2 51 68.6
A02p31410 Brassica napus HOM05D000919 ORTHO05D001187 1.8e-09 66.2 51 68.6
C02p48750 Brassica napus HOM05D000919 ORTHO05D001187 1.8e-09 66.2 51 68.6
BolC2t10967H Brassica oleracea HOM05D000919 ORTHO05D001187 1.8e-09 66.2 51 68.6
BraA02t08143Z Brassica rapa HOM05D000919 ORTHO05D001187 1.8e-09 66.2 51 68.6
QL05p069195 Quercus lobata HOM05D000919 ORTHO05D001187 1.8e-09 66.2 51 68.6
PGSC0003DMG401013284 Solanum tuberosum HOM05D000919 ORTHO05D001187 1.8e-09 66.2 51 68.6
THA.LOC104812803 Tarenaya hassleriana HOM05D000919 ORTHO05D001187 1.8e-09 66.2 51 70.6
PSO210G6147 Papaver somniferum HOM05D000919 ORTHO05D001187 2.4e-09 65.9 50 70.0
PSO302G0199 Papaver somniferum HOM05D000919 ORTHO05D001187 2.4e-09 65.9 50 70.0
Phvul.006G142500 Phaseolus vulgaris HOM05D000919 ORTHO05D001187 2.4e-09 65.9 69 60.9
Sp2g12270 Schrenkiella parvula HOM05D000919 ORTHO05D001187 2.4e-09 65.9 51 68.6
AT5G47540 Arabidopsis thaliana HOM05D000919 ORTHO05D001187 3.1e-09 65.5 51 68.6
Dinv13974 Davidia involucrata HOM05D000919 ORTHO05D001187 3.1e-09 65.5 51 70.6
VMungo0540G0204 Vigna mungo HOM05D000919 ORTHO05D001187 3.1e-09 65.5 67 62.7
FvH4_3g00790 Fragaria vesca HOM05D000919 ORTHO05D001187 4.0e-09 65.1 51 68.6
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 4.0e-09 65.1 51 68.6
FAN21G3723 Fragaria x ananassa HOM05D000919 ORTHO05D004442 4.0e-09 65.1 51 68.6
FAN25G1217 Fragaria x ananassa HOM05D000919 ORTHO05D004442 4.0e-09 65.1 51 68.6
MD05G1359100 Malus domestica HOM05D000919 ORTHO05D001187 4.0e-09 65.1 51 70.6
RcHm_v2.0_Chr5g0001041 Rosa chinensis HOM05D000919 ORTHO05D001187 4.0e-09 65.1 51 68.6
TWI63G1802 Tripterygium wilfordii HOM05D000919 ORTHO05D001187 4.0e-09 65.1 61 59.0
CSS0016248 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 5.3e-09 64.7 51 70.6
CSS0020272 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 5.3e-09 64.7 51 70.6
CiPaw.09G103600 Carya illinoinensis HOM05D000919 ORTHO05D001187 5.3e-09 64.7 51 70.6
Glyma.09G011000 Glycine max HOM05D000919 ORTHO05D001187 5.3e-09 64.7 51 68.6
CiPaw.10G078700 Carya illinoinensis HOM05D000919 ORTHO05D001187 6.9e-09 64.3 51 70.6
DCAR_004906 Daucus carota HOM05D000919 ORTHO05D001187 6.9e-09 64.3 51 68.6
BraA09t37912Z Brassica rapa HOM05D000919 ORTHO05D001187 9.0e-09 63.9 64 57.8
Cfa000087 Carpinus fangiana HOM05D000919 ORTHO05D001187 9.0e-09 63.9 68 60.3
HanXRQChr05g0129091 Helianthus annuus HOM05D000919 ORTHO05D001187 9.0e-09 63.9 51 72.5
Lalb_Chr18g0057051 Lupinus albus HOM05D000919 ORTHO05D001187 9.0e-09 63.9 51 66.7
Lalb_Chr20g0119311 Lupinus albus HOM05D000919 ORTHO05D001187 9.0e-09 63.9 51 66.7
Manes.15G064400 Manihot esculenta HOM05D000919 ORTHO05D001187 9.0e-09 63.9 63 61.9
Glyma.15G115400 Glycine max HOM05D000919 ORTHO05D001187 1.2e-08 63.5 52 67.3
MD10G1334800 Malus domestica HOM05D000919 ORTHO05D001187 1.2e-08 63.5 51 68.6
arahy.Tifrunner.gnm1.ann1.1G3A4W Arachis hypogaea HOM05D000919 ORTHO05D001187 1.5e-08 63.2 51 66.7
arahy.Tifrunner.gnm1.ann1.321WPP Arachis hypogaea HOM05D000919 ORTHO05D001187 1.5e-08 63.2 51 66.7
Ciclev10015837m.g Citrus clementina HOM05D000919 ORTHO05D001187 1.5e-08 63.2 51 64.7
Prupe.4G008800 Prunus persica HOM05D000919 ORTHO05D001187 1.5e-08 63.2 51 66.7
EL10Ac8g20216 Beta vulgaris HOM05D000919 ORTHO05D001187 2.0e-08 62.8 67 62.7
CAN.G696.23 Capsicum annuum HOM05D000919 ORTHO05D001187 2.0e-08 62.8 51 64.7
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 2.0e-08 62.8 51 66.7
Duzib160G0201 Durio zibethinus HOM05D000919 ORTHO05D001187 2.0e-08 62.8 51 66.7
Gohir.A05G174900 Gossypium hirsutum HOM05D000919 ORTHO05D001187 2.0e-08 62.8 51 66.7
Gohir.D05G177900 Gossypium hirsutum HOM05D000919 ORTHO05D001187 2.0e-08 62.8 51 66.7
Gorai.009G183300 Gossypium raimondii HOM05D000919 ORTHO05D001187 2.0e-08 62.8 51 66.7
Lsat_1_v5_gn_7_13780 Lactuca sativa HOM05D000919 ORTHO05D001187 2.0e-08 62.8 51 70.6
C07p31190 Brassica napus HOM05D000919 ORTHO05D001187 2.6e-08 62.4 50 66.0
CAN.G449.21 Capsicum annuum HOM05D000919 ORTHO05D001187 2.6e-08 62.4 66 53.0
Thecc.06G234800 Theobroma cacao HOM05D000919 ORTHO05D001187 2.6e-08 62.4 51 66.7
HPP92_024885 Vanilla planifolia HOM05D000919 ORTHO05D001187 2.6e-08 62.4 61 62.3
Atru.chr1.2380 Acer truncatum HOM05D000919 ORTHO05D001187 3.4e-08 62.0 51 64.7
BcaC04g21618 Brassica carinata HOM05D000919 ORTHO05D001187 3.4e-08 62.0 64 56.2
Cpa.g.sc75.102 Carica papaya HOM05D000919 ORTHO05D001187 3.4e-08 62.0 51 64.7
Gohir.A06G154200 Gossypium hirsutum HOM05D000919 ORTHO05D001187 3.4e-08 62.0 49 69.4
Gohir.D06G160900 Gossypium hirsutum HOM05D000919 ORTHO05D001187 3.4e-08 62.0 49 69.4
Gorai.010G187800 Gossypium raimondii HOM05D000919 ORTHO05D001187 3.4e-08 62.0 49 69.4
Sopen11g007150 Solanum pennellii HOM05D000919 ORTHO05D001187 3.4e-08 62.0 51 64.7
CANSAT56G3054 Cannabis sativa HOM05D000919 ORTHO05D001187 4.5e-08 61.6 51 62.7
Gohir.A10G008800 Gossypium hirsutum HOM05D000919 ORTHO05D001187 4.5e-08 61.6 51 64.7
Gohir.D10G008500 Gossypium hirsutum HOM05D000919 ORTHO05D001187 4.5e-08 61.6 51 64.7
Gorai.011G009300 Gossypium raimondii HOM05D000919 ORTHO05D001187 4.5e-08 61.6 51 64.7
GSVIVG01006719001 Vitis vinifera HOM05D000919 ORTHO05D001187 4.5e-08 61.6 51 68.6
Ah.09g234150 Amaranthus hybridus HOM05D000919 ORTHO05D001187 5.8e-08 61.2 50 66.0
CDE04G1618 Ceratophyllum demersum HOM05D000919 ORTHO05D001187 5.8e-08 61.2 49 67.3
CDE07G0061 Ceratophyllum demersum HOM05D000919 ORTHO05D001187 5.8e-08 61.2 49 67.3
AUR62012810 Chenopodium quinoa HOM05D000919 ORTHO05D001187 5.8e-08 61.2 50 66.0
AUR62021843 Chenopodium quinoa HOM05D000919 ORTHO05D001187 5.8e-08 61.2 50 66.0
Haze_06954 Corylus avellana HOM05D000919 ORTHO05D001187 5.8e-08 61.2 52 67.3
MBI19_g06158_MAGBIO Magnolia biondii HOM05D000919 ORTHO05D001187 5.8e-08 61.2 49 67.3
Nitab4.5_0000143g0130 Nicotiana tabacum HOM05D000919 ORTHO05D001187 5.8e-08 61.2 51 62.7
Nitab4.5_0003626g0110 Nicotiana tabacum HOM05D000919 ORTHO05D001187 5.8e-08 61.2 51 62.7
Dinv07413 Davidia involucrata HOM05D000919 ORTHO05D001187 7.6e-08 60.8 67 55.2
ECA234G2161 Erigeron canadensis HOM05D000919 ORTHO05D001187 7.6e-08 60.8 51 66.7
Rhsim02G0100800 Rhododendron simsii HOM05D000919 ORTHO05D001187 7.6e-08 60.8 61 59.0
Rhsim02G0103000 Rhododendron simsii HOM05D000919 ORTHO05D001187 7.6e-08 60.8 61 59.0
SEGI_32732 Sequoiadendron giganteum HOM05D000919 ORTHO05D001187 7.6e-08 60.8 67 55.2
BcaC06g31375 Brassica carinata HOM05D000919 ORTHO05D001187 9.9e-08 60.5 53 60.4
BcaC06g34245 Brassica carinata HOM05D000919 ORTHO05D001187 9.9e-08 60.5 53 60.4
ClCG01G010420 Citrullus lanatus HOM05D000919 ORTHO05D001187 9.9e-08 60.5 51 62.7
Cc09_g00780 Coffea canephora HOM05D000919 ORTHO05D001187 9.9e-08 60.5 61 57.4
DCAR_027814 Daucus carota HOM05D000919 ORTHO05D001187 9.9e-08 60.5 51 64.7
Eucgr.E03918 Eucalyptus grandis HOM05D000919 ORTHO05D001187 9.9e-08 60.5 51 64.7
Sed0012657 Sechium edule HOM05D000919 ORTHO05D001187 9.9e-08 60.5 52 63.5
Actinidia11889 Actinidia chinensis HOM05D000919 ORTHO05D001187 1.3e-07 60.1 51 64.7
CSS0037254 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 1.3e-07 60.1 51 64.7
CsaV3_1G017130 Cucumis sativus L. HOM05D000919 ORTHO05D001187 1.3e-07 60.1 52 63.5
Solyc05g054130.4 Solanum lycopersicum HOM05D000919 ORTHO05D001187 1.3e-07 60.1 51 56.9
Solyc11g012400.2 Solanum lycopersicum HOM05D000919 ORTHO05D001187 1.3e-07 60.1 51 62.7
Sopen05g032620 Solanum pennellii HOM05D000919 ORTHO05D001187 1.3e-07 60.1 51 56.9
PGSC0003DMG400008459 Solanum tuberosum HOM05D000919 ORTHO05D001187 1.3e-07 60.1 51 56.9
TPR.G30454 Trifolium pratense HOM05D000919 ORTHO05D001187 1.3e-07 60.1 50 66.0
Ca_00731_v3 Cicer arietinum L. HOM05D000919 ORTHO05D001187 1.7e-07 59.7 50 66.0
MELO3C025555.2 Cucumis melo HOM05D000919 ORTHO05D001187 1.7e-07 59.7 52 63.5
Medtr2g026050 Medicago truncatula HOM05D000919 ORTHO05D001187 1.7e-07 59.7 50 66.0
Potri.010G155300 Populus trichocarpa HOM05D000919 ORTHO05D001187 1.7e-07 59.7 67 56.7
Potri.010G155400 Populus trichocarpa HOM05D000919 ORTHO05D001187 1.7e-07 59.7 67 56.7
Potri.016G011100 Populus trichocarpa HOM05D000919 ORTHO05D001187 1.7e-07 59.7 67 56.7
Potri.016G011300 Populus trichocarpa HOM05D000919 ORTHO05D001187 1.7e-07 59.7 67 55.2
Sabra16G0014500 Salix brachista HOM05D000919 ORTHO05D001187 1.7e-07 59.7 67 56.7
Sed0007328 Sechium edule HOM05D000919 ORTHO05D001187 1.7e-07 59.7 51 60.8
arahy.Tifrunner.gnm1.ann1.6R3P3K Arachis hypogaea HOM05D000919 ORTHO05D001187 2.2e-07 59.3 51 62.7
arahy.Tifrunner.gnm1.ann1.NCUU5J Arachis hypogaea HOM05D000919 ORTHO05D001187 2.2e-07 59.3 51 62.7
BcaC06g34242 Brassica carinata HOM05D000919 ORTHO05D001187 2.2e-07 59.3 50 64.0
BolC7t43660H Brassica oleracea HOM05D000919 ORTHO05D001187 2.2e-07 59.3 50 64.0
MBI16_g42316_MAGBIO Magnolia biondii HOM05D000919 ORTHO05D001187 2.2e-07 59.3 51 64.7
Nitab4.5_0001735g0120 Nicotiana tabacum HOM05D000919 ORTHO05D001187 2.2e-07 59.3 51 60.8
Nitab4.5_0005135g0020 Nicotiana tabacum HOM05D000919 ORTHO05D001187 2.2e-07 59.3 51 60.8
PGR004G2894 Punica granatum HOM05D000919 ORTHO05D001187 2.2e-07 59.3 51 60.8
Sabra16G0014600 Salix brachista HOM05D000919 ORTHO05D019355 2.2e-07 59.3 50 64.0
Sabra16G0014800 Salix brachista HOM05D000919 ORTHO05D001187 2.2e-07 59.3 50 64.0
Sc17g0007830 Simmondsia chinensis HOM05D000919 ORTHO05D001187 2.2e-07 59.3 49 67.3
Atru.chr2.3599 Acer truncatum HOM05D000919 ORTHO05D001187 2.9e-07 58.9 51 62.7
vmacro15766 Vaccinium macrocarpon HOM05D000919 ORTHO05D001187 2.9e-07 58.9 51 64.7
Lj1C1241T3 Lonicera japonica HOM05D000919 ORTHO05D001187 3.8e-07 58.5 51 62.7
Lj4g0017450 Lotus japonicus HOM05D000919 ORTHO05D001187 3.8e-07 58.5 68 52.9
Lj6g0026420 Lotus japonicus HOM05D000919 ORTHO05D004442 3.8e-07 58.5 51 62.7
Manes.08G069730 Manihot esculenta HOM05D000919 ORTHO05D001187 3.8e-07 58.5 51 58.8
TAR627G0643 Trochodendron aralioides HOM05D000919 ORTHO05D001187 3.8e-07 58.5 49 65.3
ATR0712G048 Amborella trichopoda HOM05D000919 ORTHO05D001187 4.9e-07 58.2 49 63.3
Psat1g175240 Pisum sativum HOM05D000919 ORTHO05D001187 4.9e-07 58.2 52 61.5
Potri.006G014800 Populus trichocarpa HOM05D000919 ORTHO05D001187 4.9e-07 58.2 50 64.0
Hund23402 Selenicereus undatus HOM05D000919 ORTHO05D001187 4.9e-07 58.2 49 67.3
A09p23080 Brassica napus HOM05D000919 ORTHO05D001187 6.4e-07 57.8 47 66.0
Migut.H01611 Erythranthe guttata HOM05D000919 ORTHO05D001187 6.4e-07 57.8 65 52.3
SGA_v2.0_scaffold7G03742 Striga asiatica HOM05D000919 ORTHO05D004442 6.4e-07 57.8 51 60.8
Ah.14g087530 Amaranthus hybridus HOM05D000919 ORTHO05D001187 8.4e-07 57.4 50 62.0
A09p24420 Brassica napus HOM05D000919 ORTHO05D001187 8.4e-07 57.4 54 59.3
HanXRQChr10g0306401 Helianthus annuus HOM05D000919 ORTHO05D001187 8.4e-07 57.4 66 51.5
Nn1g07422 Nelumbo nucifera HOM05D000919 ORTHO05D001187 8.4e-07 57.4 61 59.0
TAR629G0864 Trochodendron aralioides HOM05D000919 ORTHO05D001187 8.4e-07 57.4 49 63.3
PGR042G0511 Punica granatum HOM05D000919 ORTHO05D001187 1.1e-06 57.0 68 51.5
Sc05g0009660 Simmondsia chinensis HOM05D000919 ORTHO05D001187 1.1e-06 57.0 45 68.9
Aqoxy4G02193 Aquilegia oxysepala HOM05D000919 ORTHO05D001187 1.4e-06 56.6 45 66.7
Oeu009406.1 Olea europaea HOM05D000919 ORTHO05D001187 1.4e-06 56.6 51 58.8
unitig_748.g7916 Utricularia gibba HOM05D000919 ORTHO05D001187 1.4e-06 56.6 51 58.8
Glyma.14G006200 Glycine max HOM05D000919 ORTHO05D001187 1.9e-06 56.2 60 55.0
Nn1g03276 Nelumbo nucifera HOM05D000919 ORTHO05D001187 1.9e-06 56.2 44 65.9
C09p29830 Brassica napus HOM05D000919 ORTHO05D001187 2.4e-06 55.8 47 63.8
Oeu016817.1 Olea europaea HOM05D000919 ORTHO05D001187 2.4e-06 55.8 51 56.9
Migut.M01411 Erythranthe guttata HOM05D000919 ORTHO05D001187 3.2e-06 55.5 51 56.9
Glyma.02G306900 Glycine max HOM05D000919 ORTHO05D001187 3.2e-06 55.5 60 53.3
Phvul.003G084400 Phaseolus vulgaris HOM05D000919 ORTHO05D001187 3.2e-06 55.5 44 65.9
Pp3c17_23520 Physcomitrium patens HOM05D000919 ORTHO05D001187 3.2e-06 55.5 44 61.4
Pp3c2_380 Physcomitrium patens HOM05D000919 ORTHO05D001187 3.2e-06 55.5 48 58.3
VMungo1215G2407 Vigna mungo HOM05D000919 ORTHO05D001187 3.2e-06 55.5 44 65.9
MSTRG.16029 Avicennia marina HOM05D000919 ORTHO05D001187 4.2e-06 55.1 51 56.9
BcaC04g21489 Brassica carinata HOM05D000919 ORTHO05D001187 4.2e-06 55.1 51 60.8
C09p31210 Brassica napus HOM05D000919 ORTHO05D001187 4.2e-06 55.1 51 60.8
BolC9t55977H Brassica oleracea HOM05D000919 ORTHO05D001187 4.2e-06 55.1 51 60.8
BraA09t38035Z Brassica rapa HOM05D000919 ORTHO05D001187 4.2e-06 55.1 51 60.8
Ca_06467_v3 Cicer arietinum L. HOM05D002272 ORTHO05D005405 4.2e-06 55.1 57 56.1
Sabra06G0010400 Salix brachista HOM05D000919 ORTHO05D001187 5.5e-06 54.7 56 57.1
GSVIVG01037761001 Vitis vinifera HOM05D000919 ORTHO05D001187 5.5e-06 54.7 73 50.7
Hma1.2p1_0133F.1_g061200 Hydrangea macrophylla HOM05D000919 ORTHO05D001187 7.1e-06 54.3 50 54.0
Os07g0585100 Oryza sativa ssp. japonica HOM05D000919 ORTHO05D001187 7.1e-06 54.3 45 62.2
Sabra16G0005300 Salix brachista HOM05D000919 ORTHO05D001187 7.1e-06 54.3 42 66.7
Sc03g0008130 Simmondsia chinensis HOM05D000919 ORTHO05D001187 7.1e-06 54.3 44 68.2
SGA_v2.0_scaffold4G01865 Striga asiatica HOM05D000919 ORTHO05D001187 7.1e-06 54.3 51 56.9
Zm00001eb107980 Zea mays HOM05D000919 ORTHO05D001187 7.1e-06 54.3 86 38.4
Sed0019385 Sechium edule HOM05D000919 ORTHO05D001187 9.3e-06 53.9 51 54.9


User provided reference genes

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