Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p23540 Brassica napus HOM05D002637 ORTHO05D015500 5.9e-147 524.2 278 100.0
A01p01530 Brassica napus HOM05D002637 ORTHO05D016052 4.1e-63 245.7 281 50.9
C01p02830 Brassica napus HOM05D002637 ORTHO05D016052 2.2e-61 240.0 282 49.3
BcaNung00759 Brassica carinata HOM05D002637 ORTHO05D016052 1.1e-57 227.6 279 50.5
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 1.5e-57 227.3 226 55.8
BolC4t28760H Brassica oleracea HOM05D002637 ORTHO05D015500 3.3e-57 226.1 286 48.3
C01p02860 Brassica napus HOM05D002637 ORTHO05D016052 1.7e-56 223.8 216 56.0
BolC1t00270H Brassica oleracea HOM05D002637 ORTHO05D016052 2.2e-56 223.4 282 47.5
C01p02840 Brassica napus HOM05D002637 ORTHO05D016052 3.1e-55 219.5 282 46.5
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 4.1e-55 219.2 292 45.2
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 1.7e-53 213.8 314 42.4
C04p72790 Brassica napus HOM05D002637 ORTHO05D015500 2.1e-51 206.8 217 53.5
BcaB06g29411 Brassica carinata HOM05D002637 ORTHO05D015500 1.4e-42 177.6 274 50.0
C04p71980 Brassica napus HOM05D002637 ORTHO05D015500 7.5e-41 171.8 246 45.9
C04p72670 Brassica napus HOM05D002637 ORTHO05D015500 7.5e-41 171.8 212 46.7
BcaC02g06975 Brassica carinata HOM05D002637 ORTHO05D015500 3.1e-39 166.4 166 54.2
BraA03t15227Z Brassica rapa HOM05D002637 ORTHO05D015500 6.1e-35 152.1 140 54.3
BolC4t28696H Brassica oleracea HOM05D002637 ORTHO05D015500 8.3e-32 141.7 135 54.8
BolC1t00272H Brassica oleracea HOM05D002637 ORTHO05D016052 1.1e-31 141.4 134 55.2
A03p61900 Brassica napus HOM05D002637 ORTHO05D015500 2.0e-30 137.1 213 40.4
A08p02290 Brassica napus HOM05D021878 ORTHO05D024469 3.9e-21 106.3 203 37.4
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 1.2e-19 101.3 206 35.4
BcaC09g52254 Brassica carinata HOM05D002637 ORTHO05D016052 4.7e-19 99.4 185 41.1
A04p34940 Brassica napus HOM05D002637 ORTHO05D015500 1.3e-16 91.3 78 57.7
BraSC79t46681Z Brassica rapa HOM05D002637 ORTHO05D015500 1.3e-13 81.3 57 63.2
BcaC09g48422 Brassica carinata HOM05D021878 ORTHO05D024469 8.6e-13 78.6 73 56.2
Carub.0006s0379 Capsella rubella HOM05D001636 ORTHO05D009134 3.3e-12 76.6 224 27.7
BcaNung01309 Brassica carinata HOM05D001456 ORTHO05D031996 6.2e-11 72.4 207 27.1
BcaNung04685 Brassica carinata HOM05D033825 ORTHO05D011036 6.8e-10 68.9 213 30.5
BolC1t00009H Brassica oleracea HOM05D001456 ORTHO05D031996 8.9e-10 68.6 202 26.7
BcaNung06671 Brassica carinata HOM05D008913 ORTHO05D011317 1.5e-09 67.8 207 29.0
A07p35040 Brassica napus HOM05D001636 ORTHO05D009134 2.0e-09 67.4 206 28.6
Thhalv10024069m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 2.6e-09 67.0 214 27.1
BcaB02g09846 Brassica carinata HOM05D001165 ORTHO05D001347 3.4e-09 66.6 205 25.9
Carub.0007s3262 Capsella rubella HOM05D001636 ORTHO05D011036 3.4e-09 66.6 206 26.2
Thhalv10019735m.g Eutrema salsugineum HOM05D001456 ORTHO05D009134 3.4e-09 66.6 157 31.2
AL3G38360 Arabidopsis lyrata HOM05D001636 ORTHO05D018456 4.4e-09 66.2 104 39.4
BolC6t39302H Brassica oleracea HOM05D001636 ORTHO05D009134 4.4e-09 66.2 215 27.9
AL5G10320 Arabidopsis lyrata HOM05D001456 ORTHO05D001571 5.8e-09 65.9 212 25.9
BNapus_Darmor_BZH_scaffold_188p00110 Brassica napus HOM05D001636 ORTHO05D018456 5.8e-09 65.9 221 28.1
BraA01t04152Z Brassica rapa HOM05D008913 ORTHO05D011317 5.8e-09 65.9 208 31.2
Carub.0001s0454 Capsella rubella HOM05D001636 ORTHO05D013186 5.8e-09 65.9 194 29.9
BraA03t14586Z Brassica rapa HOM05D001636 ORTHO05D009134 7.5e-09 65.5 213 30.5
Carub.0007s3604 Capsella rubella HOM05D001456 ORTHO05D023701 7.5e-09 65.5 220 27.3
BcaC03g18185 Brassica carinata HOM05D001636 ORTHO05D009134 2.9e-08 63.5 204 27.0
A01p18890 Brassica napus HOM05D006174 ORTHO05D007987 2.9e-08 63.5 205 25.4
C01p00030 Brassica napus HOM05D001456 ORTHO05D031996 2.9e-08 63.5 206 26.7
BraA01t01830Z Brassica rapa HOM05D006174 ORTHO05D007987 2.9e-08 63.5 205 25.4
CARHR113000 Cardamine hirsuta HOM05D001456 ORTHO05D011036 2.9e-08 63.5 162 30.9
AL1G11090 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 3.7e-08 63.2 91 38.5
BcaC09g52273 Brassica carinata HOM05D001636 ORTHO05D009134 3.7e-08 63.2 197 27.9
Carub.0008s0517 Capsella rubella HOM05D001636 ORTHO05D013186 3.7e-08 63.2 211 24.2
SEGI_28425 Sequoiadendron giganteum HOM05D001456 ORTHO05D002799 3.7e-08 63.2 81 39.5
C04p00350 Brassica napus HOM05D001636 ORTHO05D018456 4.9e-08 62.8 69 47.8
BolC4t21677H Brassica oleracea HOM05D001636 ORTHO05D018456 4.9e-08 62.8 69 47.8
AL7G41400 Arabidopsis lyrata HOM05D008913 ORTHO05D011317 6.4e-08 62.4 233 24.9
BcaB07g31709 Brassica carinata HOM05D008913 ORTHO05D011317 8.3e-08 62.0 213 27.7
BcaC03g14332 Brassica carinata HOM05D001636 ORTHO05D009134 8.3e-08 62.0 205 26.8
BraA01t04560Z Brassica rapa HOM05D001636 ORTHO05D033589 8.3e-08 62.0 209 24.9
BcaC02g12800 Brassica carinata HOM05D001636 ORTHO05D018456 1.1e-07 61.6 69 46.4
C07p49300 Brassica napus HOM05D001636 ORTHO05D009134 1.4e-07 61.2 213 26.3
BraA05t18996Z Brassica rapa HOM05D001636 ORTHO05D018456 1.4e-07 61.2 69 46.4
Carub.0001s4175 Capsella rubella HOM05D001636 ORTHO05D013186 1.4e-07 61.2 200 28.5
A02p42600 Brassica napus HOM05D001636 ORTHO05D009134 1.9e-07 60.8 204 26.5
C01p23810 Brassica napus HOM05D001636 ORTHO05D040027 1.9e-07 60.8 212 24.5
BraA10t42594Z Brassica rapa HOM05D008913 ORTHO05D011317 1.9e-07 60.8 205 26.3
BcaC02g09873 Brassica carinata HOM05D001456 ORTHO05D032772 2.4e-07 60.5 67 46.3
C06p31460 Brassica napus HOM05D001456 ORTHO05D011036 2.4e-07 60.5 70 47.1
BolC4t25235H Brassica oleracea HOM05D001456 ORTHO05D011036 2.4e-07 60.5 67 46.3
BcaB06g29167 Brassica carinata HOM05D001636 ORTHO05D009134 3.2e-07 60.1 68 45.6
BolSC55t61225H Brassica oleracea HOM05D001636 ORTHO05D018456 3.2e-07 60.1 69 44.9
AL8G37840 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 5.4e-07 59.3 198 25.3
BcaC06g33505 Brassica carinata HOM05D001636 ORTHO05D009134 7.1e-07 58.9 206 28.6
Carub.0005s2203 Capsella rubella HOM05D001636 ORTHO05D013186 9.2e-07 58.5 203 28.1
BcaC01g04096 Brassica carinata HOM05D001636 ORTHO05D009134 1.2e-06 58.2 202 23.8
A03p55270 Brassica napus HOM05D001636 ORTHO05D009134 1.2e-06 58.2 114 36.0
BolC3t16817H Brassica oleracea HOM05D001636 ORTHO05D009134 1.2e-06 58.2 202 23.3
BcaC02g12798 Brassica carinata HOM05D001636 ORTHO05D018456 2.1e-06 57.4 65 46.2
BraA06t25197Z Brassica rapa HOM05D001636 ORTHO05D024225 3.5e-06 56.6 214 26.2
C05p29980 Brassica napus HOM05D001636 ORTHO05D027512 4.6e-06 56.2 72 43.1
C07p48170 Brassica napus HOM05D001636 ORTHO05D009134 4.6e-06 56.2 215 25.1
C07p49280 Brassica napus HOM05D001636 ORTHO05D009134 4.6e-06 56.2 216 24.5
BolC5t31733H Brassica oleracea HOM05D001636 ORTHO05D027512 4.6e-06 56.2 72 43.1
BolC7t45340H Brassica oleracea HOM05D001636 ORTHO05D009134 4.6e-06 56.2 215 25.1
SEGI_20611 Sequoiadendron giganteum HOM05D001456 ORTHO05D004886 4.6e-06 56.2 75 40.0
AL4G13470 Arabidopsis lyrata HOM05D001636 ORTHO05D011036 6.0e-06 55.8 85 35.3
BcaC02g09571 Brassica carinata HOM05D001636 ORTHO05D024225 6.0e-06 55.8 221 24.0
Carub.0002s0630 Capsella rubella HOM05D001456 ORTHO05D013186 6.0e-06 55.8 206 27.7
Carub.0008s0675 Capsella rubella HOM05D001636 ORTHO05D013186 6.0e-06 55.8 196 27.6
Sed0008463 Sechium edule HOM05D001456 ORTHO05D002799 6.0e-06 55.8 75 38.7
CARHR175440 Cardamine hirsuta HOM05D001636 ORTHO05D009134 7.8e-06 55.5 222 25.2


User provided reference genes

Program Settings